G5078 (LOC107719778,LOC107689468,LOC107567043,LOC107692165)


Basic Information

Item Value
gene id G5078
gene name LOC107719778,LOC107689468,LOC107567043,LOC107692165
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21707854 ~ 21709359 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7227
AGGTGCATGaatttattaacataattaataaataactgatTTCACAAAAcagcagtctttttttttttttttttttttttttttacattttaaaatggagatTATTCACCAGGCTGTCACTTCTAGTAGGATGCTTGTGGACTAGAAAAGTGGTTTTCAAACTTGTTCCAGGGGACCCACAGAAACATTTTGCATGTATCTatgtaaattaatgttaaaatgaatgatagGTACCAAAGTAAGTATTTCAGGGGTAGGCAATGTTGGTCCCGGAGTGCCGATTTCCAGCAGAGTTTAGCTgcaaccctgaaaaaaaaaactcacctgCCTGTAGCCTTAGTAATcctaaagaccttgattagcttgttcaggtgtgtggaTTTTAGACAGCAATTTGCCATTTTGAAGTGTGTTCCACTTTGCGAAGTGGACGAGGCAAGGTTATATGGAAATACCCTTAATCCCTTGCAGGAGGATGAATATCCAGCACTCTCTCCACCTTCAATATCACGACTAAGGTTAGACCCTTGAGCCTtaatgggttaaatgcagagcacaaattccaaGTATGGGTCATCATAACTGGCCACAGGTCACTTTCACGTTCACACCCAAGTGAACAAGACGAAGGGaagttttataaaaagaaaacaaactggAATGCAGCCTAGGACTGGCATTTCCTACTCTATACATTAAGAAGTCTAGCTCAAGTAGATTAACAAAATTTTTGTTGGTGTCTCACCAAAACGTACTTGTGCGCAAACATCCGTCCACATCGATCGCAACCAAAAGGCTTCTCACGtgtgtggatcctcatgtgcGTTTTGAGGTTTGAAGACTGGTTGAACATTTTCCCACAAAGGTTACAGCCATAAGGTTTTTCGCCGGTGTGAACAGTCACATGCTTTTTGAGGTTACTTTGATCTGCGAACTGCTTGTCACAGTGCACGCATTTGAATGGTTTTTCACCTCTGTGGATGCTGTGGTGTCTTTTCAGACTAGACGCCTGACTGAATCGCTTACCGCAAAGTGTACAGTGGTGAAGCCTCTCCCTGTTATGAAGTTTTTGATGCAAGAGGAGAGTGCTGGATTGAGAGAACCCTTTTCCACAATGTTTACACACAAACTTGTCTTTCTTTTGCATCTGAGGCGAGTCTGACTGTGAAATGGCGTTATCTTCATCGTTGTGTGTTAAATGACCTTCCATATCCGGCACAGACAAGCCATTAGAGTCCATTGGAGTTGCATAGGAACAAGTGGGATCAGTGCTCCCTCTGTACATCAAAAACTGATTCACAGAAGGTCCGTTGCACTCAGATTCAGCATAGGAGGCATGATTTGTGGTTCTGTCAAATCTCCTGGAAACCCATGAGGGATATGAAGGGTCAGGCTGCAGGTTAGTCACTGAATCTTCATCACAATGTCTCTCCATTTTGGTTTCACC

Function

NR:

description
PREDICTED: zinc finger protein 23-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7227 True 1447 lncRNA 0.43 2 21707854 21709359

Neighbor

gene id symbol gene type direction distance location
LOC122341576 LOC107747335 coding upstream 344 21696521 ~ 21707510 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521,LOC107692201,LOC107567044,LOC107552750 coding upstream 170877 21528263 ~ 21536977 (+)
LOC122349977 ctnna2 coding upstream 297359 21387883 ~ 21410495 (+)
lrrtm1 LOC107706126,LOC107551676,LOC107711523,LOC107689474,LOC107558618,LOC107692175 coding upstream 670526 21032623 ~ 21037328 (+)
suclg1 suclg1,LOC107674246,LOC107730526,LOC107664570 coding upstream 996536 20696533 ~ 20711318 (+)
trnak-uuu NA coding downstream 175077 21884436 ~ 21884508 (+)
dnaja1 dnaja1,LOC107746728,LOC107603013,LOC107676129,LOC107720316,LOC107551804,LOC108431796,LOC108260608,LOC106591825 coding downstream 175407 21884766 ~ 21890170 (+)
btr01 LOC107676126,LOC107551815,LOC107746733,LOC107720311,LOC107692198,LOC107603009 coding downstream 198787 21908146 ~ 21913580 (+)
si:ch211-151p13.8 si:ch211-151p13.8,LOC107692197,LOC107746734,LOC107676123,LOC107551838,LOC107720312,LOC107602984 coding downstream 204639 21913998 ~ 21920806 (+)
LOC122352554 NA coding downstream 356434 22065793 ~ 22067928 (+)
G5028 smox,LOC107719767,LOC107689473,LOC107551688,LOC107692173,LOC107551695,LOC107567053 non-coding upstream 136705 21568102 ~ 21571149 (+)
G4996 NA non-coding upstream 629958 21077039 ~ 21077896 (+)
G4991 NA non-coding upstream 687128 21017220 ~ 21020726 (+)
G4984 ctnna2 non-coding upstream 777212 20928297 ~ 20930642 (+)
G4976 NA non-coding upstream 986818 20720279 ~ 20721036 (+)
G5098 NA non-coding downstream 34506 21743865 ~ 21744213 (+)
G5118 dtx4,LOC107746726,LOC107676128,LOC107692161,LOC107603012 non-coding downstream 160541 21869900 ~ 21871709 (+)
G5111 rps6,LOC107603014,LOC107551827,LOC107676127,LOC107720314 non-coding downstream 189691 21899050 ~ 21905109 (+)
G5112 NA non-coding downstream 236452 21945811 ~ 21951335 (+)
G5132 NA non-coding downstream 332507 22041866 ~ 22042112 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 72802 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 87262 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 346414 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 1464505 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 1561998 20142461 ~ 20145856 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 1131329 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 1833705 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 2574123 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 2847438 24556797 ~ 24558929 (+)
G5817 NA other downstream 2994489 24703848 ~ 24704319 (+)

Expression


Co-expression Network