G5159


Basic Information

Item Value
gene id G5159
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22232347 ~ 22235529 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7341
CTTGAACATTGCCAGCCCAACTCCCATTCTCTCTCCTCAACTCTTGCATGTTGATGTGAGCTGGGTCTTGTCTCTTCCTCTCATAGCCCTGGATGGAGGAGTGGCTGACCGTTGAAGTAGTTTGAGAGATTGGTAATAAAAATTAGGACTGGTGTAGAGACCGTGGATGAAAGTGTTGGACCCTACTGTTAATCCAGGCTGGATGACTGAGCACAAGTATTGTCTATAGAATCAAAACTATTAAGAAAAGTCACTCAAGAAAAGTAAGAAAGACGCCTGGCTCACAAATCAAGACCAAATAAAAGACAAGTAAGACTTTGAATGTCTGAGCTATGAAAACGGTGTTCAGTCACTGAAGAAAACTTTTATATCAAATCTAAGAAATGTACTTAAAATTGAAAAGGAACCAGGACAAAGTCTAGGATAAAGCCTACATTGGCTAGAAAATGTGATATAAATtggaaaaaaaggtgaaaagaaGATTTTTCTTGATTAGTCTAAAAGTCCGTTTTCATCGTGAGCAAGTCCACAAGTTCTGGAGCTGCTGGATGCCCAGGAGTGAAAGAGCTGAAGCAGCGGCGTCTGGCCTTAAATCGTCATTGGTTCAGGTATCCATGTACGTACTTTGCTGGGTCCTTCTCTTGACACTATTGGAATTAAAGCATCCagggaaaaaaagagtgatACGTGAGGGTAGATGGTGGAGGACTAAaagaactgtttaaaaaaaaaagagagaaagaaaaagaattaaaaaaccGATAAGGAGATGTGGAGATGGTTTTTGAGTCTCTTTCACAATTCTAACCCAACTTTCATTCAGGGAGCGTCACACTTTTGGGAtgaagggagggagggagggatggaAAGAAGAGGGGATGATCAGAGGAGGGTGATGGCGAGGAGGGACAGGTGAAGGAATGAAGGGGGtcataaatagtaaaaaatgaGTGGcagagtaaaaaacaaaaacaaacaaacttgccccttctttctcttctctcctgTCTCGTCATAAATAGACAAAATTATACACCATATAGATGGAGAAATAGATCAGGAGGCAAATGATGGAGAGAGCGAACAACTGAAAAGATGATGTGCCTCCCAGCACCACgatgagaaagaagaaaaaaacaaaacgaaagaaaaaaacaaatactccAGTGCCTTccgtttttcttcttttcttttgaacagAGAAAGGCAGTCAGTTTGTTCCTGTCATCCAGTTGTTGCTTTAgctctttccttctttccttctcCCTCactcttttttcctctctttctttctcttggCTTCTGTAGGAGTCCTCCGTTTGCAGTAAGTAATAGCCCTTTTCCACAGACAGTGACTGAGGCAGAACAGTAGGAAGAGGTGTAATGGTTGCAATGTCTGCCCAAGAATTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7341 True 1412 lncRNA 0.41 2 22232347 22235529

Neighbor

gene id symbol gene type direction distance location
si:ch211-243a20.3 si:ch211-243a20.3,LOC107676841,LOC107712233,LOC105901553 coding upstream 88268 22138455 ~ 22144079 (+)
emp1 LOC107676894,LOC107712235,LOC107551885,LOC107718756,LOC107692152,LOC107603024 coding upstream 103999 22124510 ~ 22128348 (+)
evi5l evi5l,LOC107676895,LOC107718810,LOC107692153,LOC108428244 coding upstream 120996 22073396 ~ 22111351 (+)
LOC122352554 NA coding upstream 164419 22065793 ~ 22067928 (+)
si:ch211-151p13.8 si:ch211-151p13.8,LOC107692197,LOC107746734,LOC107676123,LOC107551838,LOC107720312,LOC107602984 coding upstream 311541 21913998 ~ 21920806 (+)
trappc5 trappc5,LOC107692146,LOC107712234,LOC107676838 coding downstream 57919 22293448 ~ 22295199 (+)
mcoln1a mcoln1a,mcoln1,LOC107561871,LOC107676888,LOC107603030,LOC107718592 coding downstream 60503 22296032 ~ 22309386 (+)
si:ch211-214c7.4 LOC107676873,LOC107561873,LOC107712236,LOC107692142,LOC107718585,LOC107603029 coding downstream 74368 22309897 ~ 22333823 (+)
pkn1a LOC107712223,LOC107676851,LOC107603033,LOC107561874 coding downstream 103250 22338779 ~ 22370612 (+)
map2k7 map2k7,LOC107712243,LOC107692141,LOC107676852,LOC107718577 coding downstream 135700 22371229 ~ 22383969 (+)
G5134 ddx39aa,LOC107712218,LOC107676896,LOC107603018,LOC107692155,LOC107551870 non-coding upstream 162213 22068067 ~ 22070134 (+)
G5132 NA non-coding upstream 190235 22041866 ~ 22042112 (+)
G5112 NA non-coding upstream 281012 21945811 ~ 21951335 (+)
G5111 rps6,LOC107603014,LOC107551827,LOC107676127,LOC107720314 non-coding upstream 327238 21899050 ~ 21905109 (+)
G5118 dtx4,LOC107746726,LOC107676128,LOC107692161,LOC107603012 non-coding upstream 360638 21869900 ~ 21871709 (+)
G5178 NA non-coding downstream 149737 22385266 ~ 22387528 (+)
LOC122350977 NA non-coding downstream 290593 22526122 ~ 22530488 (+)
G5206 NA non-coding downstream 303741 22539270 ~ 22539472 (+)
G5223 NA non-coding downstream 480007 22715536 ~ 22733117 (+)
LOC122346574 NA non-coding downstream 499905 22735434 ~ 22741631 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 597295 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 611755 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 870907 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 1988998 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 2086491 20142461 ~ 20145856 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 605159 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 1307535 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 2047953 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 2321268 24556797 ~ 24558929 (+)
G5817 NA other downstream 2468319 24703848 ~ 24704319 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G338024 NA non-coding CI01000119 null 2468890 ~ 2470577 (-)