G5223


Basic Information

Item Value
gene id G5223
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22715536 ~ 22733117 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7477
CTAACAGCAAGTTTATTTTGGTTAGGTTCATTGATACATAAAGCACGTCCTGAGGGAGTGATGAGCGAAAGATGTGTTGCCATAGAAAGGTAGTGGTGGGAAGGGGGAGTGGATAGGTCGAGAATTGTGGGTAGTTGTGAACCATATGAAAAGAATGAGAAGGGAGCAAAATGGAAGTTAAGGGGATCAATTACAAGTCAGCCAGCAGACTAGAGGAGAATTTAATGAGAATTATACTCTACTCCAGAGAACGTCTCATCGCAAAGTCCAGAGATAGGCAGACATAACACCCAAAAGACCCCATAGTATAAGCAGCTCCAATGCAACGTGGTAGGCATTATGAACCTCTTTTGTAGttgctttgaaatgaaaaacaaaaggcacaATGAATTTCAACTCATTCTTTATCTTTAATATGCACAAgagttgaaaaaaaatactgatgagCCACCTTAAAGAGAAATTCAGTTctaaaatttataaaaacatacaaacaatcAGAGGCCAAAATGCGATCTGTCgctttttagattaatttttttttctttagcaagTAAAAATCTTGCAACAAGCAATAAGCTTGTATCCATTTCTGATACAAGACAAAAAACTTCTTTAAAGTGGCTCGTTTTCTAGTTGTCTAGATAAGTTCATGAAtttcaaacctgtttttttctttttgttcaacAAATAATGGCTAATTCAAAAATTATCAGGGCTGCCTTCAGCTTCCTTACTGTCTTTGTCAGCAGTTTGCGGCCCAAACATAACTACTTTAgttcaaatgcaattttttccCATACATCCCTTTACAAGTTAATGCacagggaaaaaagaaaaaaaaaaaaaaaaaaacatccagtcACAACAGTAAGAAAGCCCATTTTCCAAATAATGGCAGTCATTTGCCATTATAAAATCAAAgttaaatcaaaaatgaaaaaaaaaaaaaatacccctATTGGCTGTAAATCAATAGTCACAACGTTATTATTGTTCTGTAGCGTCCCAACAATGTCTAGTGGACCTAAGTGGTAGCTTCGCATTATATACCTAAACaagaaatatacttttattttagttggtACAATTAGGTTTTGTAGCAAgtgaaataagattaaaaaccaactaaacaaaaaaaaagaaccacaATGTTATGGATCTCTTTTCCCCATTGCTTGTATAGTCAAAATTAAAGCGAACATCGCTCTCCACTTACATTAAGCAATAAAACGGGAAAACCAAAAGTGTGCGCGTAAGACTGGAAAAACTGCAAAAGCGGAAGCTCCactgatcaaaacaaaaaaaagaactcaCAATCCAATCACTGTTGCAAAGTTTCTTGTGGTTTTGACTACCAAGTGACAAAATGCACTGATTTAGTGAAAATATCCTCCGAACGGTTACAACTGGGCTTATCCCGATGAACTTATTACTATGCTTACAGACAGGAAGTAGAGAAGATGAATCCAGAAAATAAAAAGCGCTGCCAGAGCACCCTTGTTAAGCAGAAAGACCTGTTAAGGTTATCTCAAAGAACTTTCAAAGGCTGGGGCATCCCCTTTAAAAGTCCTGGCCAAATTGACAAATCACAGAGGTTCCTCCTTTGACATGTCCGACAGTCCCACTGCAAACCAAATAAAGATCGACACGATGAATGTCCACTACACTATCGCTGCAGAACTTGAAAATGAGGGCGTTTGACTGCCTTAAATGAAATTTTCTCCATTCAAGTTTGTGTGATCTTCtgacgtgatttttttttttttTTTAtgaacaaaagcaaaatatttattactaaatacacaaaacacaaataagacCTGTCAGAGTagaacatacaaaaataacatcatatatACTCAATTAGTTAAAACCAGCTTTGTGATCGGTTGCAACAGTTTATAATTAGAGAACACAGAtaatcagggttttttttttccttttgggtaaaatattaaatatttaaggttAATTACCCTTACACTTCTTACTCTATTGTACCTCTCACATTTAGCATATTAGTTACATTAAACTTCAATAAgacgtaatatatatatatatataacaacagaaaatacaaCCAAATATAATACAAACGCAACGAAATTgacatatgtatttttgtaaagctTGTATAAATCcaagtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtctgtaggTTATACATCacacagacaacaaaaaaatccaaacgATCTTTGACAGTATTCTTGAATCAAAATCAGCATTACAGGTCAGCATCACTCTGTTTTCTTGAAATGCATAAAGTATAAAGTCATGATAGTCAGCTCTAATACGTGACTCAGTTATTACCCGTTTTTGTCTTTCAACAAAAATCCATACATTCGCAACAGCACACTGTTAATACCGCACATGAGTAAGCGTACAGCGTTTGATGGAGTCTAACtgaaagatgtatttttttgaataaaccTTTTGAAATCAGTACACGGATCATTAAAGCGCCGAAGGTATAATGGAGTACGACTTTGGATGACGTTAGAGTAGTAGAAATGGGCAGATGTGCGTCAGTTTTACACAAATCAAAATGGCAGATAGCGTCGTTTCAGCTCCCTCCAGTGGGACGAGACACACAATCATCAAGAGTTCAGTCATAACCGCAGCACTTCCATTCCCGGCTGCggagtacattttgttttgtgtatagCATGCCGGGAACTTTAGAAGATCTGTTGCTCAAACAAAATCTTTTGGTAGCCTTGCGGTGGAGGATGGTAGAAGTCAGTGAACTGGCAATCCAATATCGCACTATCGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7477 True 2821 lncRNA 0.36 3 22715536 22733117

Neighbor

gene id symbol gene type direction distance location
arl11 arl11,LOC107676843,LOC107746302,LOC107560992,LOC107603040,LOC107718406 coding upstream 3575 22710993 ~ 22711961 (+)
cab39l cab39l,LOC107676861,LOC107718429 coding upstream 19795 22685839 ~ 22695741 (+)
mcf2la mcf2l,mcf2la,LOC107676858,LOC107692131 coding upstream 30918 22623552 ~ 22684618 (+)
tubgcp3 tubgcp3,LOC107692132,LOC107746265,LOC107718870 coding upstream 94285 22603737 ~ 22621251 (+)
sox1b sox1b,sox1a,LOC107746263,LOC107567792,LOC107676867,LOC107692134,LOC107718482,LOC107603037 coding upstream 196926 22515466 ~ 22518610 (+)
cryzl1 cryzl1,LOC107560977,LOC107603049 coding downstream 169639 22902756 ~ 22909636 (+)
cbr1 cbr1,LOC107746284,LOC107560976,LOC107692178,LOC108428204 coding downstream 180523 22913640 ~ 22916406 (+)
morc3b LOC107603048,LOC107692193,LOC107746056 coding downstream 183428 22916545 ~ 22925622 (+)
bcl9 bcl9,LOC107746285,LOC107676875,LOC107566537,LOC107746055,LOC107692115,LOC107603052 coding downstream 202752 22935869 ~ 23020832 (+)
gja8b cx44.1,LOC107566539,LOC107746070,LOC107746288,LOC107603011,LOC107692191 coding downstream 304727 23037844 ~ 23039022 (+)
G5206 NA non-coding upstream 176064 22539270 ~ 22539472 (+)
LOC122350977 NA non-coding upstream 185048 22526122 ~ 22530488 (+)
G5178 NA non-coding upstream 328008 22385266 ~ 22387528 (+)
G5159 NA non-coding upstream 480007 22232347 ~ 22235529 (+)
G5134 ddx39aa,LOC107712218,LOC107676896,LOC107603018,LOC107692155,LOC107551870 non-coding upstream 645402 22068067 ~ 22070134 (+)
LOC122346574 NA non-coding downstream 2317 22735434 ~ 22741631 (+)
LOC122331092 NA non-coding downstream 19369 22752486 ~ 22757654 (+)
G5264 NA non-coding downstream 74533 22807650 ~ 22809030 (+)
G5289 NA non-coding downstream 131717 22864834 ~ 22865790 (+)
LOC122351271 NA non-coding downstream 309132 23042249 ~ 23044134 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 1080484 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 1094944 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 1354096 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 2472187 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 2569680 20142461 ~ 20145856 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 107571 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 809947 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 1550365 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 1823680 24556797 ~ 24558929 (+)
G5817 NA other downstream 1970731 24703848 ~ 24704319 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G103268 NA unknown NC_053121.1 CM020918.1 3902991 ~ 3925309 (-)
bowfin (Amia calva) G110940 NA non-coding CM030134.1 CM030134.1 11790052 ~ 11793501 (-)
bowfin (Amia calva) G69722 NA non-coding CM030128.1 CM030128.1 11719318 ~ 11722767 (+)
tiger barb (Puntius tetrazona) LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 misc NC_056711.1 CM032080.1 14079532 ~ 14082790 (-)
mexican tetra (Astyanax mexicanus) G102816 NA non-coding NC_035908.1 CM008311.1 12063536 ~ 12067895 (+)