LOC122346574


Basic Information

Item Value
gene id LOC122346574
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22735434 ~ 22741631 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7479
TAAAAGAGCGCGTGATGTGTTCGCAGTTATGCGGTGGAACCGTTTTACCCAACGTCCCTACTTTTCATAGGATTATTGCAGTAttgtaaaactatatatatgcgTATTTATTTTGACTGACATCACCACATTGTCTTTTGGGGTGACTAGTAAGCGGATGTCGAGcacaTTTCTATTCTACAAGTGATGGGTGGATTTTTTCTGGAGAAGTACAAAGTGCTCAAAATCTATTTGCATACTCTTAACTCTCTGGTCGGTTGTGGTGATTTGGTACTTGTTCTGAGAAACACATGATATTCACACTGCTCTTACATCACCTGCCTGCCTCTCCCTCACTCACTATTACGAGGCACTTCATGAGGATATagaagacagacaaaaaaaaaggttctaaTATACTCCTggtattttatgcatttcagaAAAGAATTCAGCTGAACCATGCTTCTTGTAATCAATATAGTTAAAATGATTCAACTAGTGGTGTACTTACAGTTACTGTGTCACAGCTCAGAGTCATGCCGTGTGCTCGACATTCCTTTcctggagaaaacaaaaataaaggaat
>XR_006251146.1
CACTTTGGTCGACCTTAATGGTAAACTTAAATGGAAAGTTCatccagaaattaaaattctgtcatagtCTACTCACCCACACGTTGTCCCAAACCTGTATTCGTTTATTACAGCTGCTTcgcacaaaatatatttttaataacgtGTGTAACCACAAAGTTGACGGTGGCCACTGGCTAGTATGAGAGGAGAAATACTCTTAAGTCAGTGGCTTAAAGAGCATTTAAGTCAACTTTTCTCCAAAATATCTCATGTGCTCTGCAGAAATAAACTCAAACAACTTTGGAGCGACAGAAGAGTAAACGATGAcggaattttaatttcagggtgaactatcactttaaattcGTAAGACTGGCGAGCGAATTATTACCACACTAAACATAATGTCTCTTGATGGGATAATTTAGGCCTTGATGTCTTTGTATTATAAGACCGCGCAGGTAACAGGAAGAAAGTTTGACACGACAGACAACTGGATAGACTGTACAAGTTTGGATATGTGTGCCCGATCGTGCGCGAGACAGGGCGTTAAATCTGAGAGATAAGGATCGATGTGACCTTAAAAGCTTTTAACCTGCTCCGTGCCACTCGGTTACAGTATGAGGTTTTGCATAGCAACAAAGTGAGGGGGGATCTCTACCCATGATTGGGCGCGTCTCAATCAGCTCCCTTGTTCAGTAGTAAGGGCACTGAGCAGGCAGTCGGCCATTTTAAGGGCTGTCTCAATCGCGAAATCCTTCCACTGCACTGGAACGTTCGCTCcctgaaaaaaaatcccacaatgcaccgcgAAAACTAGGGCGCATCGGTGCACACTACGCTCCCTTACCGGAAATAACGTCACATTTCTTAAGCGTGAAACATAAACCACACAAGCGAACGCGATGAATATAATAACACATGATAGAAGATTTGAAAAAACTTACCgttttttttacgtttcaacataaacacacaacgCTAAACCGGTAATGAACACAcataattatcatttataattagtACTCGGCTGTAATGTTGTACGGAAATGTAACAGAACGATGTGATTAAcgagatttaaaaaataatatggaAACCGGattaatatatttcagtgaTGACGTTCTACTATCTTGTCTGTTGAAGCCGCGCGTAATCACGTCACTGGAATTCGAGTGGTCCGTGTCCCAATGTGCGTTGAGTTAGGGAACTTATCAGTGAGCGAACTCACGAGACCCACTGATCCACGAGCGCGGGAGCCGATTGAGACGCACCCTGGCCGACTACTTTCACAAACGAAAACACCTCTCTACCTCGCTTCGCATGTTTTTTCGCCCTCGCGTCAcggaaaagttaaaatgaacattttgcaaGACGCCCGTTCGTTCCGTGCCACGCGTGACTTCGACGTTaacttttgtttgttgtttttgaagttCGCTAGTGTGGAAATCTGCACAGCAACAAGCGCCATGATTGCGTTCTCTGAGTGCCCTAGTAACTGGCGCGCGCGGTTTCTATCCAATAAAAGAGCGCGTGATGTGTTCGCAGTTATGCGGTGGAACCGTTTTACCCAACGTCCCTACTTTTCATAGGATTATTGCAGTAttgtaaaactatatatatgcgTATTTATTTTGACTGACATCACCACATTGTCTTTTGGGGTGACTAGTAAGCGGATGTCGAGGTAAATGGACCAAAAAGAAGcacaTTTCTATTCTACAAGTGATGGGTGGATTTTTTCTGGAGAAGTACAAAGTGCTCAAAATCTATTTGCATACTCTTAACTCTCTGGTCGGTTGTGGTGATTTGGTACTTGTTCTGAGAAACACATGATATTCACACTGCTCTTACATCACCTGCCTGCCTCTCCCTCACTCACTATTACGAGGTAAGTGTGCACCGTGATTAAGTTCACTGCATCCAGACCTTCATTTAGACACATCtgacaaaagcagaaaaacttTTGAccgttataaaaaaaaaaacaagtgtatTCTGAGTGCATTCACGTTTTCTAAAGGAATTGTATTCGTCCAAAATTATCTTCATATTCAACGAGATTTGCAAGTAGATTCATTTAGGTAATTTAAATCAGTCAAGACGTGAATGTTTAAAGAACCATATGAGTAAGCTGAAACTGAAGCTTTCATACGGGTGAGCCCCAAACTATCTTTGAAATCACAAGAAATAATTTACATGACACAAAGTGCAAAATAACTGggctaataataacaatttcacGCATGACTAATCTTCAgtatttatcatgttttatttctgatgtTGTTTTCGTAAACCCCCAGGTTTCTGTTCCATTCAGTAAACGCACATGTGCTATTGTACCAGGTGATCCAATACTGACAATAAACTTTTGGTGTAACACAAGCAAGAGGACAGTGAAGCATCTGCTGTCTATAAGTGTAAAATTACAGGTTATGAAAAGAGCCCCATGGACTTCTGGGAGAGAAAAAAGTGCTGCCTGACAAAAGCCTGTAACCTCccacattataatatttacttatgttGTTTGCTTTGTCTGTATGACTTTAACTTTCTCGTTTTCTCTTTGTTAGGCACTTCATGAGGATATagaagacagacaaaaaaaaaggttctaaTATACTCCTggtattttatgcatttcagaAAAGAATTCAGCTGAACCATGCTTCTTGTAATCAATATAGTTAAAATGATTCAACTAGTGGTGTACTTACAGTTACTGTGTCACAGCTCAGAGTCATGCCGTGTGCTCGACATTCCTTTcctggagaaaacaaaaataaaggaatatttATGAAGCACAAAA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko04742 Taste transduction
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU7479 False 568 lncRNA 0.48 3 22736941 22741614
XR_006251146.1 True 2797 lncRNA 0.40 2 22735434 22741631

Neighbor

gene id symbol gene type direction distance location
arl11 arl11,LOC107676843,LOC107746302,LOC107560992,LOC107603040,LOC107718406 coding upstream 23473 22710993 ~ 22711961 (+)
cab39l cab39l,LOC107676861,LOC107718429 coding upstream 39693 22685839 ~ 22695741 (+)
mcf2la mcf2l,mcf2la,LOC107676858,LOC107692131 coding upstream 50816 22623552 ~ 22684618 (+)
tubgcp3 tubgcp3,LOC107692132,LOC107746265,LOC107718870 coding upstream 114183 22603737 ~ 22621251 (+)
sox1b sox1b,sox1a,LOC107746263,LOC107567792,LOC107676867,LOC107692134,LOC107718482,LOC107603037 coding upstream 216824 22515466 ~ 22518610 (+)
cryzl1 cryzl1,LOC107560977,LOC107603049 coding downstream 161125 22902756 ~ 22909636 (+)
cbr1 cbr1,LOC107746284,LOC107560976,LOC107692178,LOC108428204 coding downstream 172009 22913640 ~ 22916406 (+)
morc3b LOC107603048,LOC107692193,LOC107746056 coding downstream 174914 22916545 ~ 22925622 (+)
bcl9 bcl9,LOC107746285,LOC107676875,LOC107566537,LOC107746055,LOC107692115,LOC107603052 coding downstream 194238 22935869 ~ 23020832 (+)
gja8b cx44.1,LOC107566539,LOC107746070,LOC107746288,LOC107603011,LOC107692191 coding downstream 296213 23037844 ~ 23039022 (+)
G5223 NA non-coding upstream 2317 22715536 ~ 22733117 (+)
G5206 NA non-coding upstream 195962 22539270 ~ 22539472 (+)
LOC122350977 NA non-coding upstream 204946 22526122 ~ 22530488 (+)
G5178 NA non-coding upstream 347906 22385266 ~ 22387528 (+)
G5159 NA non-coding upstream 499905 22232347 ~ 22235529 (+)
LOC122331092 NA non-coding downstream 10855 22752486 ~ 22757654 (+)
G5264 NA non-coding downstream 66019 22807650 ~ 22809030 (+)
G5289 NA non-coding downstream 123203 22864834 ~ 22865790 (+)
LOC122351271 NA non-coding downstream 300618 23042249 ~ 23044134 (+)
G5522 neurl1,LOC107746293,LOC107746052,LOC107692176,LOC107676877 non-coding downstream 407561 23149192 ~ 23153598 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 1100382 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 1114842 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 1373994 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 2492085 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 2589578 20142461 ~ 20145856 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 99057 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 801433 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 1541851 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 1815166 24556797 ~ 24558929 (+)
G5817 NA other downstream 1962217 24703848 ~ 24704319 (+)

Expression


Co-expression Network