LOC122348949 (LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984)


Basic Information

Item Value
gene id LOC122348949
gene name LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22840688 ~ 22851393 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7556
AGGAACAGTGTTCTTTATTACAAAACCAAGAGTCTGAAAGGcaagtctgtgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtaagagagaagCGATTATAGAAGCAAAGAGAAAAACGCTCAAAAAGCCCAAAGTGCAGCGTTTAGACCTCCCCATGCTAAGCTAACGGAGTTTTGTCCTTTCGGGTTCGTCATCTGACCGATGGCATCACAAGACTACTGCTGCAAATGAAAAGCCGCTCAGTACAGACAGCCTACAGCACATACTGAACACATTTAATAACCAGAAAACAGGGTATATGAGCTCAATCAAGTGACGGCTGTAAATGAAAGAATTTC
>XM_043244851.1
ATGAGAGAAGGAGAGCAGAGTCATGGCTTCTTCCCAGACAGCAGGAGAGACGGAGCGGCCCGTTTCACAGGGAGGAAGCCGACAGGAGAGGCGTCTCTtatttgtctgtgttttcaggATGCGGTGGAGGACGGCACTGAATCTGGCGCTCTGGAGTTGGTCTCAATCACAGAAGAGGACCTTCCTGTCGTCGAGACGCCCACCACCTTCAACGTGAGCTCCTTCAGCAGTCAAAACAGCCACTCCAGTCACTTCTACGACCCGGACGCGCAGGACCCCCACGTCCCCGTCGAGCTGCCCGCCGCGGCCTCCGCTCCACTGCCCGTGTATAAAACCCATAACATTCAGATCCCGCCCAGCCCAGGGGTGCCCGTCATCAAGGTCCAGCCCTTCTTGAACGgaGAAAGACTGTCAGACCTGAAGTCTTTGTGTTGGCCGTATGTCTCTCGCAGATTGCTGGCTCTGCTCATCATCTTGGGATTGCTAATCGTCTTGATTCTGATTCTAGGAATAGGTTTGGGAGTGGGTCTGAAGAGTTGCTCAGGGAAGTTCCGCTGTCTGTCGTCGGTTCGGTGTATCAGCAGACACGCTGTGTGTGACGGAGTCGAGGACTGTGGAGGTGGAGAAGACGAGCTCAACTGTGTGCGTGTGAGTGGCAGGAGCTCTGTGCTGCAGGTCTTCAGTAGAGGCTCATGGAGGACGGTCTGCTCCGAAGGCTGGGGCTCTCACCTGGGGTCTGCAGCCTGCAGGCAACTGGGATACAACAGCTACGTGAGCTCTACTAACGTGCCCATCTCCTCCATCGAAGCCGTCTTTCAGAATAATCTAGTGGCACTTAATATCAACCAGACTGGACTTCAAGACAACTTCAAACTACAAAACTCTTCATACCTCAGAAAAACCCAATGCACTTCTGCTGCAGTGACTTCTGTCAAGTGTATAGAGTGTGGCTCCAGGCCAGCGGTCCACACTCGTATCGTGGGAGGGAACGTGTCAGAGCCTGGGCTGGTCCCGTGGCAGGTCAGCCTGCATTACCAGAACCAGCATCTGTGTGGAGGATCGGTCATCAGTGAGCGCTGGGTTGTCACTGCTGCACACTGTGTGTACGGCTTTGCTCAGCCAGTGCTGTGGGCTGTGCATGCTGGGATAATAGACCAGCCATTGGGTGGAACTGGAGCTCTCTCTGTGGAGAAAATCATCTACCATGCCAACTACAGGCCAGGAGGATTCAGCTACAACATAGCTCTATTAAAGCTTAAACTACCTCTATCTTTCAATGACAAAGTGGTACCCATCTGTTTGCCCAGTTATGGCGAAAGCTTTAAGGATGGACAGATGTGTTTGATCTCAGGCTGGGGAGCCACAGTGGATGGCGgAGAGGCCAGTGGGTCCCTACACACCGCTCAGGTCCCGTTACAGTCCAGCAGAGACTGCCGCAGACAGGGCCTGACCTCCTGGAACATCTGTACAGGATTCTCGGCGGGTGGTGCTGGAACATGTCAGGGGGACAGCGGAGGGCCACTGGCCTGTCAGGGGTCCGCTTGGACATTGGTGGGGGCAGCCAGCTGGGCTGAGAGCTGTGGAGAAGCAAATAAACCAGGGATTTACACCAGCATAAGTGAAGCTCTCACATGGATTCAGCAACAAATGGAGAAAGAAGAGGATCAGCGGCGCTGAGCATCTCGCAGCGAATGGGCTTCTATTTCAATACATAACATCCAACGTGACTTGTGAAGGAgaatctatatataatatgtgatGCATTctataattttcatatataatttactacaatgtgttgaaaatgtttatttttcttaggTATTTGGATTatagaatagttttttttataaatatttaatatagattgccttttaacattttttattaattattttgaactTAAGATTCAAAAAGTGAACACTGCAAAAATTATGCAGAAATGCAAAATTAAGCTTTATGTGGTAAGTATACATTTACAACACTGTATAcagaatatattatattgcattaggGCATTTATTACGAAAACcgtttatatttgaattatcaTCAGTAGGAATTTAATGTACGACAAATTACAAAATGAcccatatatttaaataattcttgtTAATTCTATTGaccagaatgaaaaaaaaaaaaaaagtttattttaactgtatctatttattgtacattatttatttgtgctcaATTATTTATCATTCACCTATCCAAGCATGTCAagacatattttatatgtaaggCCAAATGTATACACGCTTAATTATTATcttcattaaattaatgttaataaaagatTTAGCACATTAAAATGACCTTCTCAAGTCTGTTTAGCTCCTCCGAGTCTCTGTATTCTTGTCTTcacttatttagtttttgctaGTGTTTCGGAAATTACTAAACGCTAATACGAACTAAAAGCCAACCATTTCCACTTTCCAAGAACCACGCTGCAACTTCATCCAGAGTCACTTGATTAATTTCTTTACCAGACTTTTTGAATGTTACACTAAAAATACTCTGACATGAATGCAGCTCATGACCTCTGAAGGATTTTACTACTGgatgcaaatacaaatacagacaACAAAGTGTCCTTCAGGAACAGTGTTCTTTATTACAAAACCAAGAGTCTGAAAGGcaagtctgtgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtaagagagaagCGATTATAGAAGCAAAGAGAAAAACGCTCAAAAAGCCCAAAGTGCAGCGTTTAGACCTCCCCATGCTAAGCTAACGGAGTTTTGTCCTTTCGGGTTCGTCATCTGACCGATGGCATCACAAGACTACTGCTGCAAATGAAAAGCCGCTCAGTACAGACAGCCTACAGCACATACTGAACACATTTAATAACCAGAAAACAGGGTATATGAGCTCAATCAAGTGACGGCTGTAAATGAAAGAATTTCATcttgtaaaatagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: transmembrane protease serine 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7556 False 338 lncRNA 0.52 1 22851012 22851349
XM_043244851.1 True 2988 mRNA 0.45 13 22840688 22851393

Neighbor

gene id symbol gene type direction distance location
arl11 arl11,LOC107676843,LOC107746302,LOC107560992,LOC107603040,LOC107718406 coding upstream 128727 22710993 ~ 22711961 (+)
cab39l cab39l,LOC107676861,LOC107718429 coding upstream 144947 22685839 ~ 22695741 (+)
mcf2la mcf2l,mcf2la,LOC107676858,LOC107692131 coding upstream 156070 22623552 ~ 22684618 (+)
tubgcp3 tubgcp3,LOC107692132,LOC107746265,LOC107718870 coding upstream 219437 22603737 ~ 22621251 (+)
sox1b sox1b,sox1a,LOC107746263,LOC107567792,LOC107676867,LOC107692134,LOC107718482,LOC107603037 coding upstream 322078 22515466 ~ 22518610 (+)
cryzl1 cryzl1,LOC107560977,LOC107603049 coding downstream 51363 22902756 ~ 22909636 (+)
cbr1 cbr1,LOC107746284,LOC107560976,LOC107692178,LOC108428204 coding downstream 62247 22913640 ~ 22916406 (+)
morc3b LOC107603048,LOC107692193,LOC107746056 coding downstream 65152 22916545 ~ 22925622 (+)
bcl9 bcl9,LOC107746285,LOC107676875,LOC107566537,LOC107746055,LOC107692115,LOC107603052 coding downstream 84476 22935869 ~ 23020832 (+)
gja8b cx44.1,LOC107566539,LOC107746070,LOC107746288,LOC107603011,LOC107692191 coding downstream 186451 23037844 ~ 23039022 (+)
G5264 NA non-coding upstream 31658 22807650 ~ 22809030 (+)
LOC122331092 NA non-coding upstream 83034 22752486 ~ 22757654 (+)
LOC122346574 NA non-coding upstream 99057 22735434 ~ 22741631 (+)
G5223 NA non-coding upstream 107571 22715536 ~ 22733117 (+)
G5206 NA non-coding upstream 301216 22539270 ~ 22539472 (+)
G5289 NA non-coding downstream 13441 22864834 ~ 22865790 (+)
LOC122351271 NA non-coding downstream 190856 23042249 ~ 23044134 (+)
G5522 neurl1,LOC107746293,LOC107746052,LOC107692176,LOC107676877 non-coding downstream 297799 23149192 ~ 23153598 (+)
LOC122350314 NA non-coding downstream 302341 23153734 ~ 23154301 (+)
LOC122350307 NA non-coding downstream 329610 23181003 ~ 23182431 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 1205636 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 1220096 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 1479248 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 2597339 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 2694832 20142461 ~ 20145856 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 691671 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 1432089 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 1705404 24556797 ~ 24558929 (+)
G5817 NA other downstream 1852455 24703848 ~ 24704319 (+)
LOC122329747 ndufaf5,LOC107594415,LOC107583196,LOC107684300,LOC107675590,LOC107756989 other downstream 2132653 24984046 ~ 25398340 (+)

Expression


Co-expression Network