G538


Basic Information

Item Value
gene id G538
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2703522 ~ 2720923 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU785
ttttttttttttttttttttttttttttTtagaaaaatagattttattaaagTCAGTCAAAAGACAATGGAAacgaaaaaaagcaaaagccaAAAGCAAAGTGAATAAAGACAAGTGAAGACAGCAGAAGCCGGTGATCAATGATTTGAGCAGCGAAGGTCAGGAGAGGATCAGCGCAGACGATCCCAGCGCCAGATCGAAGCGTCATCACACACCGCGATCAGAATACTGCTGTCTCGACTGAAGCTGGTCTGTCTGATCGCAGACGTGCATTTGGGCAGCGTGAGCGTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU785 True 293 lncRNA 0.42 2 2703522 2720923

Neighbor

gene id symbol gene type direction distance location
tmem39a tmem39a,LOC107662110,LOC107570077,LOC107551106,LOC107751086 coding upstream 3298 2691742 ~ 2700224 (+)
ildr1a LOC107751054,LOC107570078 coding upstream 12757 2678298 ~ 2690765 (+)
LOC122351317 ildr2,LOC107662109,LOC107751053 coding upstream 27493 2656133 ~ 2676029 (+)
gpa33a NA coding upstream 48674 2647427 ~ 2654848 (+)
cd247 cd247 coding upstream 129545 2564546 ~ 2573977 (+)
rpl24 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676,LOC107662117 coding downstream 18754 2739677 ~ 2742411 (+)
LOC122353699 NA coding downstream 21156 2742079 ~ 2742212 (+)
LOC122328837 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC103365236 coding downstream 37160 2758083 ~ 2782184 (+)
LOC122350229 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC108414264,LOC100710496 coding downstream 220847 2941770 ~ 3120820 (+)
slitrk6 slitrk6,LOC107674010,LOC107558904,LOC107730399,LOC107574216,LOC107737039,LOC107698122 coding downstream 1083676 3804599 ~ 3817996 (+)
G527 NA non-coding upstream 76118 2626045 ~ 2627404 (+)
G486 NA non-coding upstream 97445 2603191 ~ 2606077 (+)
G518 NA non-coding upstream 114514 2588687 ~ 2589008 (+)
G517 NA non-coding upstream 114849 2588445 ~ 2588673 (+)
G512 NA non-coding upstream 119875 2579316 ~ 2583647 (+)
G546 NA non-coding downstream 5377 2726300 ~ 2730720 (+)
G719 NA non-coding downstream 565026 3285949 ~ 3286202 (+)
G771 NA non-coding downstream 999341 3720264 ~ 3720539 (+)
LOC122341420 NA non-coding downstream 1299174 4020097 ~ 4024338 (+)
LOC122346127 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 non-coding downstream 1488486 4209409 ~ 4218600 (+)
G482 dusp27 other upstream 107220 2594931 ~ 2596302 (+)
setdb2 LOC107570068 other upstream 144995 2493572 ~ 2558527 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other upstream 176278 2524525 ~ 2527244 (+)
pcid2 pcid2 other upstream 185137 2511572 ~ 2518385 (+)
grtp1a grtp1,grtp1a,LOC107571994 other upstream 214419 2483640 ~ 2489103 (+)
G727 NA other downstream 613735 3334658 ~ 3340876 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other downstream 915784 3636707 ~ 3699093 (+)
G824 NA other downstream 1635775 4356698 ~ 4357260 (+)
G826 NA other downstream 1637084 4358007 ~ 4358296 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 2217258 4938181 ~ 4944841 (+)

Expression


Co-expression Network