G546


Basic Information

Item Value
gene id G546
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2726300 ~ 2730720 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU796
AGAACaaggaatttttatttaaaactgaattacaGCTAAACTCACAGAATATCATGTGACCTGTAAAAAATCCAAACAATGACCCACTCcctatgtataataaaaaataatgctgaataaaaagagaaagaataacaatatacaCGAATCCCACCACCACAAAACATCAGCAATATCATGTAATATGAGCTTTATAATGTACATCTTTTTCTGAAAGCAGCAGTTACAACAAACAGAGTAATCAGTTATCCAGAATAATAGAGGACTTCTTGGGAATGGCATGGCCtcataaaaagttaattatcaATGGAAGAAAGTCCCAAAAtaacacactgaaacacaccTGAAGTCAACAATCAGGGCGTTCTGGTTCAACAGGCTTGAAGTTACTGATCATCATCTCATGTTTAACCTTCTGACAAAACACACATcagagtaataataataataataataataataataataacaaaggtATACAGATATAGTTACATTGAGATTATAGTTTACAACCCTTTACACACCATAGCCAAATGCAATGCTTCAGATCTGCCTATGAACAAGAGAAGAACATTCACTTTCTTCCTCTTTAACGAAGTGTCCACATTTATTATGACTTTCTGAATAATCCTTCCTATCTTCCTCATATCACTGGATTATTCCTCTTCTGACGTCCAGAAGTTTCTCTGAAGTGTTGCTCTCACTTTCCCTTGCCGTCTACTACTCAGTAGTGAACAATGATAAGACTGTTTCATGGAAACAACCGACATCTGCCTGTGAGAGCAAATGAATCTGTACAGACCGGCTGCCTGACTGACAGCGATTCTGGAGAAGAGCTCGCTCACGAGCGGCTCTGAGCTCCTTTACCTTTCAGGATACGACGCACCTGTGaagagcagagaaaaaaaaaagagattcgGTCTGAGCTTTTAATTGGATTGTAAGGGAATCTGAACTGTGCTGGTCGTCACCTAATCAGTTCCTGAAGTAGAAGAATATTACGTGTACTTTTCAAAACAGCGGGGAAAGTCTATATTCACTTAGCGTGCTTATTTATCGTTCTCTGACCTGGTCCCCCAGGGGCCCGTCGGGCACCAGCTGGGCTGGCTGCTCGTTCTCCAGGTTCTTGGCTCCGGGGTCAGCTCCTCGTCTCAGCAGCAGTCTGACTGCATCCATCTGAGCCGGACGACCCTGTAGAGCACTGGCCATGTGCAGCGCCGTGTTCCCGCTGAACGCCTGGGGCACAGAGCAGAGGtcaggggtcaggggtcagagCAGCGCTGACCGGCGCAGCAGAGCACTGCACACTCACCTTGACGTTTATGACCGAGAAGTAGTTGGACTGGTCCAGAAAGAGGCGCAGCAGCTCGACATTAGCCTCTTCAGCAGCCATATGCAGAGCGGTGCGTCCACTTTTACAGTCCTGTCAGAAACACGAGTCACAACAGCACCAGCAGCGTTTTGCTGATTTTCACTGAAATTTTATGGCCACACAATATTTCACTGTATAAATATCTGAACAtgcaatacataaaaataaagatcaGAGCCTCTACTttcaaacaaaaactatttattccAGCTTCAAGCATTGTTTTATTATCAACACCTTAATGTGGTTAGGTTTCATAAAGaacatgaaaacattaaaatgaatgggtGTGTCAATCAAAAATTTCACAAAGCATAGTGTTAAAGGGAACCCTGGATATTAAGACCTGTATGgcttaatataatgtaattgatGTCCTTTAGTGAAATATGTAGAAGAAAACCCATACATATTTTGGACTGTGTGGGTAAAATGGTGATCTAGACAactcaaaaaacacaacaagaaaTACTGATTTGATGACCACAGCTAATGAACGAGCTTACAGGAGGCGATGGATATAAGCATAACCTTAAActattcactttattttaagctatAAATGTCTTAACATCCAGGGATCCCCTGAAAtgccaaaacttttttaaatctgtgaGACTTTAGGAGCAGTGAAGAAGACTCTTCTATTCTACAAATACCATTAAAACCATTATTTGGGAcatgttccattaagatttagtgtttttaacaaGCCACCAGGGTCCATTAAAGTTTACATTAAATCCAACACAAGTCCCATTATAACCAGAAAAGCACCACTAACCTTGGCTTCCATCGAGGCTCCCATCAGCAGAAGAGTGCTCACACATTCAGCGAGCATCTTTCTCTTCTGTAGCAGAGCTGGACTGTGAGTGGATGGAGGGCCGAGGCTCAGCTCCTGCAGCACGGCATTGTGGGATAACACGGCCACGTGAAGAGGCGTAAGTCCTGCCAACACAAAACACTCTGCATCCTTTACGGCCCTCCAGCATCAGCTATGTAGCAGTTCATCACATCTAATAACCAGTAGGGCTGTCCAGTAAACATATGAATTTAGAATATTTGtccaatttataataaaaatacacattaaagtGCAAAAACGTTGCATCAGAATTTTAGGTGTGCATCAGGTGGCCTTATCAGACGTCTACAATTTTATGATGATAGTGATTTTTTGATTTAgtgcattttaatgcttttgataCAGCGCGGAGAAGATTTTATGGCAAACAGAAGCTGTTCTCACGTAACGCTTATTTATCTATCACCGTTACACTCACGCCTCACACAAGAGATCCACATATTCAGAAAGCATGTAAAATTAAGttctttttacataaaaacatacttatttttaagtgttattgtATTGCTTTGAGGAATTGTGTATTTATAGTCAAACCTAGACCCCAAACAGAAATTATGCtatttaaatttgcatatatttaacatattcataacatttaagtaaaaaagaCACTGACCGTCGTAGTTGACCACCTCCACATTGACCGGCCGTCCGCTCGTCTGGACAGATCTCTGGATGGCCTGAGGAGAAACCGTGAGTTTGCTATTTACACAATTCCCAAAAAGTGAAAACAGATCTCAACATGCACTGCCCTAATGGCATTCTGGGAGAAGCCGATGATTGCGTGCCACGACCTGTCGGTCGTTAATGCCTGAGAGAAACACAGGTATGTTGTTTTGCAGTCTTATCAATAGAGCTGTGTagtgaggccaggccagggaattttctctctgtgttGCGTGCCTCTATTTTGAGGAAATGCATATTAGTTAGGCATGTTATGAGGAAGTCAGTTAGAGTCTGGTTAAATAAACACCGATGAGGACTGTTGATAGaatatgagtaaataataaGAGGAAAAACAGCGGCTAACAGATGGCGACACAGGTTAATATGGAAATACTGCATTGTTGATGACTGTAGGGACAGGTCAGGCTGGTCAACTAGTCACTCAGCAACTGGTCAGGTACTGGTTGTGTACTTAAATTAAAGTGCAAttatcaattaaaatgtttgtgagCTTAATGTGTGCGCTTTGTACCGGTTATCATATTGAACAGAggtttattcttttatttgtattagcTGAGATCTTATGTTCTGATTCTTTAAGGTGTTTGTCTTGACTGGACAGAAGActgcttaaaaatacaaaaacaaacgcATCAAGCTGTTGATTTTTATGAATGGAATATTTAGCACACACAGTATGTCTAATCAAGCTGCTGTGAACGTTTGAGGAgagttaaatataataatctagtGTTATGTGAAAGAGCAGAGCGGAGCTGGCCTTCAGCGTTGAGCAGATACCTGCAGCGTGGAGAAGTGGCCCTTCTCTGCGCAGATGTGGAGCGGGGCCCGGCCCCAGCAGTCCCGGGTGTTAAGCTCGGCTCCCAGCAGAAGCAGGTCTTGAGCGATCAGGTGCTGATCAGCAGCGACGCTCACCTGGAAGGCGCTCTGAAGAGAACATGCCGATGGCAGACATTTTTCTGGCGAGGACATACGCCAGAGCTCTTCTGCCCTGAGCCACAGCAATGTGCAAGAACCTGTAATCAGTCGGCAATCAGCTAACGACTCGAGCCCAGGTTCCTTTGAAGACATGTGAACCAACAGAACAGAGGAGCACTCACGTGTCTCCGTCTCCGTCTCGAGCGGTCAGGTCCACAGGGCTCAGAGCGGACAGCTTCTCCTCCTCCTGTTGGATCTGCCACTGGAAGAAGGACACCGGAGGCGCAGCGGTCAGGCCGAGGCTGGACGAGGATGGGTATGTGTTCAGAAGGCCGCTGTGAAAGGGGCTTTGGGCATCAGCACACAGATCCTGAGGAAAGCCTCTCACCGTCACAGACTCGAAGGACAGAACGTCCCTGATGTCCTCCAGCATCTCAGCGTCACTGAACACATTCTCGCTGCACAGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU796 True 4323 lncRNA 0.64 2 2726300 2730720

Neighbor

gene id symbol gene type direction distance location
tmem39a tmem39a,LOC107662110,LOC107570077,LOC107551106,LOC107751086 coding upstream 26076 2691742 ~ 2700224 (+)
ildr1a LOC107751054,LOC107570078 coding upstream 35535 2678298 ~ 2690765 (+)
LOC122351317 ildr2,LOC107662109,LOC107751053 coding upstream 50271 2656133 ~ 2676029 (+)
gpa33a NA coding upstream 71452 2647427 ~ 2654848 (+)
cd247 cd247 coding upstream 152323 2564546 ~ 2573977 (+)
rpl24 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676,LOC107662117 coding downstream 8957 2739677 ~ 2742411 (+)
LOC122353699 NA coding downstream 11359 2742079 ~ 2742212 (+)
LOC122328837 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC103365236 coding downstream 27363 2758083 ~ 2782184 (+)
LOC122350229 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC108414264,LOC100710496 coding downstream 211050 2941770 ~ 3120820 (+)
slitrk6 slitrk6,LOC107674010,LOC107558904,LOC107730399,LOC107574216,LOC107737039,LOC107698122 coding downstream 1073879 3804599 ~ 3817996 (+)
G538 NA non-coding upstream 5377 2703522 ~ 2720923 (+)
G527 NA non-coding upstream 98896 2626045 ~ 2627404 (+)
G486 NA non-coding upstream 120223 2603191 ~ 2606077 (+)
G518 NA non-coding upstream 137292 2588687 ~ 2589008 (+)
G517 NA non-coding upstream 137627 2588445 ~ 2588673 (+)
G719 NA non-coding downstream 555229 3285949 ~ 3286202 (+)
G771 NA non-coding downstream 989544 3720264 ~ 3720539 (+)
LOC122341420 NA non-coding downstream 1289377 4020097 ~ 4024338 (+)
LOC122346127 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 non-coding downstream 1478689 4209409 ~ 4218600 (+)
LOC122346159 LOC107557315,LOC107705456,LOC107725343,LOC107707608,LOC107674013,LOC107667809,LOC107556266 non-coding downstream 1488522 4219242 ~ 4221288 (+)
G482 dusp27 other upstream 129998 2594931 ~ 2596302 (+)
setdb2 LOC107570068 other upstream 167773 2493572 ~ 2558527 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other upstream 199056 2524525 ~ 2527244 (+)
pcid2 pcid2 other upstream 207915 2511572 ~ 2518385 (+)
grtp1a grtp1,grtp1a,LOC107571994 other upstream 237197 2483640 ~ 2489103 (+)
G727 NA other downstream 603938 3334658 ~ 3340876 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other downstream 905987 3636707 ~ 3699093 (+)
G824 NA other downstream 1625978 4356698 ~ 4357260 (+)
G826 NA other downstream 1627287 4358007 ~ 4358296 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 2207461 4938181 ~ 4944841 (+)

Expression


Co-expression Network