LOC122328837 (gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC103365236)


Basic Information

Item Value
gene id LOC122328837
gene name gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC103365236
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2758083 ~ 2782184 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224891.1
gagagagggagagagggattGCTACTTTCTCTCCGCTgatagaaacacacagcagaagTTGAGAGCGCGCCGCTCCGGATCTATTCTGGAGGCTTCTCTGCTCTGCTCGCACACGCGTTCGTTCCGAGCGGATCCGTCGGAGAATTCTGCTATGAGCCGGATGCGACAGAAGGCGTGATTGATCATTGATGAGCGATTGCATGATTGAAACATTAGTCCACCTGCAGCTGGAGACGCCGGTGCGCTGAGCGCGTCTTGCGGGTTTTGCGCTTTTACGCATCGGCTGGATTTGCGCGCAGGAGGGATGTTGAAGACACCTGTCGTGGTTTTCACTTCTTTATCGCTGCTGTTGTCGCTGTCATGTGCTGGAGATGTAAAATCGCGCAGCTGCAGCGATGTGCGCCAGGCGTTCACGACCAAAGGCTTCAGTCTCCATAATGTGCCACATCAGGAGATATCAGGTGAACATCTGCGGGTCTGCTCCCAGGGCTACACCTGCTGCACTTCAGACATGGAGGACCGGCTCGGCCAGCAGAGCAAACTGGATTTCGAGAAATTAGTGGAAGAGAACAGCCACACCATTAGGACCATATTTACCTCCAGGCATAAAATGTTTGACGAATTCTTTCTGGAGTTGCTGGACAACTCGGAAAAGTCTCTGAACGACATGTTCGTGCGCACATACGGCAAACTGTACACGCACAACTCGGAGATGTTCGAGGACCTGTTCTCGGAGCTCAAGCGCTACTACACCGGCGGAAACGTCAACCTGGAGGAAGTGCTGAACGACTTCTGGTCCAGACTCCTGGAGCGCATGTTCCAGCTGCTCAACTCTCAGTACACCTTCACAGACGACTATCTGGAGTGCATCAGCAAGTACACCGACCAGTTAAAGCCCTTCGGAGACGTGCCACGCAAGCTCAAGGCTCAGGTCACCAAGGCCTTTATCGCGGCGCGCTCCTTCGTTCAAGGACTCATGGTGGGTCGGGAAGTGGCCAACAGAGTGGCAAAGGTCAATATATCTCCAGGTTGCAGTAAAGCACTGACTAAAATGCTGTACTGTCCGTACTGTGGAGGAATGCCAGGCCTCAAACCCTGCTCCAACTACTGCCAGAACGTCATGCGGGGCTGCCTGGCCAACCAAGCCGACCTGGACCCCGAGTGGAACCTCTTCATCGATGCCATGCTGCTGGTGGCTGACAGACTGGAAGGGCCCTTCAACATCGAGGCCGTCATGGAGCCCATAGATGTGAAGATCTCTGAGGCCATCATGGCCATGCAGGACAACAGCATGCAGGTTTCATCCAAGGTGTTTCAGGGATGCGGTCATCCCAAAGCAGCTGGAGTGGGCCGATCTGCCCGCGGGATCTCGGATGTGTTCAACAGTCGCTTCAGACCCTACAGTCCAGAAGAGAGGCCGACCACGGCAGCCGGCACCAGCCTGGACAGACTGGTGATCGACATTAAGGAGAAGCTGAAGGAGTCGAACAAATTCTGGTCGTCGCTGCCAGACGGCATCTGTGCAGAGGACGAAGTGACTGACCCAGATGAGGAGCAGTGCTGGAACAGTCACACAAAGGGAAGATACTTCCCTGAAGTTGTAAAAGACGGCCTGACGAACCAGCTCAACAACCCAGAGGTGGAAGTGGACATCACGAGACCGGACACCTTCATCAGACAGCAGATCATGACCCTGAGAGTGATGACCAACAAGCTGCGAAACGCTTACAACGGCAAAGACGTCTACTTCCAGGACTCCAGTGAGTcgcttcctttaaaaaaaaaataaaaaagtgtcaGAAAC

Function

symbol description
gpc6a Predicted to be involved in several processes, including regulation of neurotransmitter receptor localization to postsynaptic specialization membrane; regulation of presynapse assembly; and synaptic membrane adhesion. Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in collagen-containing extracellular matrix and membrane. Predicted to be anchored component of plasma membrane. Predicted to be active in cell surface and synapse. Is expressed in blastomere and nervous system. Human ortholog(s) of this gene implicated in omodysplasia 1. Orthologous to human GPC6 (glypican 6).

NR:

description
PREDICTED: glypican-6-like isoform X2

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG:

id description
K08112 GPC6; glypican 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224891.1 True 1804 mRNA 0.54 8 2758083 2782184

Neighbor

gene id symbol gene type direction distance location
rpl24 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676,LOC107662117 coding upstream 15672 2739677 ~ 2742411 (+)
LOC122353699 NA coding upstream 15871 2742079 ~ 2742212 (+)
tmem39a tmem39a,LOC107662110,LOC107570077,LOC107551106,LOC107751086 coding upstream 57859 2691742 ~ 2700224 (+)
ildr1a LOC107751054,LOC107570078 coding upstream 67318 2678298 ~ 2690765 (+)
LOC122351317 ildr2,LOC107662109,LOC107751053 coding upstream 82054 2656133 ~ 2676029 (+)
LOC122350229 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC108414264,LOC100710496 coding downstream 159586 2941770 ~ 3120820 (+)
slitrk6 slitrk6,LOC107674010,LOC107558904,LOC107730399,LOC107574216,LOC107737039,LOC107698122 coding downstream 1022415 3804599 ~ 3817996 (+)
LOC122352357 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 coding downstream 1225591 4007775 ~ 4011370 (+)
LOC122342374 erbb4a,LOC107674013,LOC107725343,LOC107556266,LOC108440448,LOC107557316,LOC107707608 coding downstream 1439099 4221283 ~ 4232503 (+)
spry2 spry2,LOC107549433,LOC107750630,LOC107674014,LOC107676062,LOC107750049,LOC107556294 coding downstream 1713010 4495194 ~ 4499239 (+)
G546 NA non-coding upstream 27363 2726300 ~ 2730720 (+)
G538 NA non-coding upstream 37160 2703522 ~ 2720923 (+)
G527 NA non-coding upstream 130679 2626045 ~ 2627404 (+)
G486 NA non-coding upstream 152006 2603191 ~ 2606077 (+)
G518 NA non-coding upstream 169075 2588687 ~ 2589008 (+)
G719 NA non-coding downstream 503765 3285949 ~ 3286202 (+)
G771 NA non-coding downstream 938080 3720264 ~ 3720539 (+)
LOC122341420 NA non-coding downstream 1237913 4020097 ~ 4024338 (+)
LOC122346127 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 non-coding downstream 1427225 4209409 ~ 4218600 (+)
LOC122346159 LOC107557315,LOC107705456,LOC107725343,LOC107707608,LOC107674013,LOC107667809,LOC107556266 non-coding downstream 1437058 4219242 ~ 4221288 (+)
G482 dusp27 other upstream 161781 2594931 ~ 2596302 (+)
setdb2 LOC107570068 other upstream 199556 2493572 ~ 2558527 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other upstream 230839 2524525 ~ 2527244 (+)
pcid2 pcid2 other upstream 239698 2511572 ~ 2518385 (+)
grtp1a grtp1,grtp1a,LOC107571994 other upstream 268980 2483640 ~ 2489103 (+)
G727 NA other downstream 552474 3334658 ~ 3340876 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other downstream 854523 3636707 ~ 3699093 (+)
G824 NA other downstream 1574514 4356698 ~ 4357260 (+)
G826 NA other downstream 1575823 4358007 ~ 4358296 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 2155997 4938181 ~ 4944841 (+)

Expression


Co-expression Network