LOC122341576 (LOC107747335)


Basic Information

Item Value
gene id LOC122341576
gene name LOC107747335
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21696521 ~ 21707510 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235068.1
AGCTTGGACAGACAGACACCAGATTTATTAGCCATTTCATAATactatattttttgcatttaaaatttagattatatatatgttgtatgttattgctcttattttttctgttatttttctttacagatTAAGCCATAATGACTCGAAGTTCACTCTTTCAAGTTATCATGCTATTTTTCATTCTACACTTTGAAGAAGAGGCTCTGGCTTTCAAGTATATGCTAACTAGTTCCTTTACCCACCAGGAAATAACAGAAAAGGCAATTTTACAAACAACAGCAGAAGTCTGTAGGGTTCAGGCACTTCAACAAGGAAGGAATTTTGTGCAGCCAGATGTATTGACAGTTGAGTCTCTGACAGAAGCTTGCTCATCTCCTACATCTGTCAAAGGTTTCGAACAAGCTATTAATACAGTTTGTGATAGTAATGCAAGGATTGACAAAGACAAACCAACGGACGGAAAATACCACTTTGATGATGAGAAGTTTTTGGAGGGCTGGTATCTCATCAAAGAAGGTGTTGCAGCTGTTAAATATGCTGCAGATAAGATGAACTACGAAACGGCAAGAGAGAGATTGGGTGAGATTCTGCATACTATACAGgatttttacAGTCACAGCAACTGGATAGAACTAGGAAACCTGTTTCCATACTCAAACTTGATCAGACCTGATAAGACTATAGAAAATATTgcagGAATTGAAACTGCCACTTGTAGGAACTGTGATGATAACTGTAAAGACAACATTCTGAACaacatcataaaagaaaaaaaactgacatcAGGATACTTTGGATTTTCCAAACCACCAGGAAAGTGTAGCCATGGAGACTTCTTAGACGTTTCAAGTTTGTTTGAACCTAAAGGTGGAATCAATAAAGACACACGATCATCCAAGCATGGTCACCTTCATGACAGTGCTTCAACAGTAGCCATTGCTGCCACCAGAGAACTACTGGAAGACATAAGAAGTTACTTGGGAGACTCAAATTTTTTGAGATTCATGGGATTCTCTCAGAATTCAGTTCTTTGCTTTACTATTGACACTACAGGCAGCAGGGATGACATTGAAGAAGTAAAACGAGTCACTTCTGAGACCACAGACAGGATGAGAGACACTGTATCAGAGTACATTCTGGTGCCATTTAATGACCCTGACTTTGGACCACTGATAAGAACAACAGATCCTGATGAtttcaaattacaaattaatgcTCTTCGGCCCCATGATGGAGGAGACACACCAGAGCTCTGCCTTTCAGGACTCCAGCTGGCTCTGACTGGTTCACCTCCCCAgactaaaatatttgttttcacgGATGCCGATGCAAAGgacttacaattaaaaaatactgtgtTGGCACTGATTGAAAGCACAAAGTCTGTGATAAACTTCATGTTGACAAATGGTCTTGCTGCTCGTCGAAGAAGACGTGAGGACCTGAATCTAGGGCAGAACCAGCAGTACTCCACCAGGATCTCCAATCCCTTAAATGAGGTCTATGTAGATTTGGCTCTGGCTTCTGGAGGGCAGGCGATTGAAGTTACAAAAGCAACACTTCCCCAAGCCACCAGCATTATAGCGGACGCTTCCACATCTGCTCtaGTAACTGTTTTTCAAACTGTAATTAACCAAGGAAAAGGAGAAAACTTCTCTTTCACCGTGGACTCCTCGCTGAAAAATTTGACAGTCTATATTACAGGAAGTTATCTAGTGTTCAACATCACAAGCCCATCAGGGGTTTCTCAGACCAATGAAGAATTAAGTGGAAAACTGGGCTTGGTTGAGCATGTGGGTAACTTTTACAGGGTGCGTCTGACTATACCTGATCCAGCAGGCCTTTGGAACATTAATATTAACTCATCACAGTCCTACACCATCAAAATCGTTgGTCAAAGTGACATCGACTTCCTCTTCAATTTTGTGGAGCTAAGTGATGGTGCTCATTCAGGCTACAGTGTATTAAGGGGCAGACCCACAGCAAACAATAACGTCACACTACTGCTTACTGTTCTGGGTGGGGACTCTGTTATCCCTACAGAGGTGGCTTTTGTGGAAGCTACAGGATCCAAGACTATTACTGGAACCTTAGAAAAGGTTGCAGGACGGAATTTCTTAGTCACAATGAACAGTGTGCCAGCAGGAGAATTTGTTGTACGTTTAACAGGGGAAAGGAGTTCCTCACGTTCATCAAATGATCGCTTTCAGAGACAGTCTGTCACTCAACACAGAGCTTCCAGTCTGGTTATTACTGCTCAGACAGATGAGGTGTGGGAACCTGGGAAGACATTGAACATCCCTTTCAAAGTGTTGAACAGTGGCTCTTCTGAGCTCTTTAACATTAATGCCAGGAACAACCGTGGGTTTGTCACAGTATTTCCCAGCAACATGTCTGTTGGAAGTGGGAATAGTGGAAATGGCACCGTAAATATCACAGCGCCCTTAAACACTCCTTCAGGCACTGAAGTAACTCTCACCATTGAGGCAGAAACAACTGAGAAAAGCGATTTCAACTATGCTGTGCTTAAGCTTGTGATTGCTTCTCCGAGTACAGATGTGACATCTCCAGTCTGTGAGATTGTTAGCATAAAAGCTAACTGCTCAGGCAACTGTAGCCTGTCGTCATGGAATCTCTCAGCCAAACTTACAGATGGAAATGGGACTGGTATCGTATCTGTGACTCTGCGTCAGGGTCTTGGAACCCTCAACACTAGCACCACAATCGGAGATGGAGATGTGAACGTCACTTCTGTGTTCTACAGTGCCTCTTGTTGTTCTGAAGTAATGGAACTGGTTGCTGTAGACGGGGCTGGAAATGTTGGCATTTGCTCAAGGTCAGTAACATCCGCTGTCACCACCACAACCTACACAACCATGTCTACATCTACTACAACAAACAGCATGACTacagcaacagcagcaacaacaacagctaCAACAACAGTAATGATGACTTCCTCTACTTCCATTAATTCCACGACCAACAGTGCTAGATGCCCTTTTATTCACCCATGATTTTTTGGGTTAGTGTTGGAGCTATTCTGTTTTTCCATGTGTTATGCTTCTAAACATTTTATGCTAGTTGCCTTTACACTAACATTCTATCCGTcctgtcaattttttttttaaattgtcaaCATGTGGTATAAAATTTTCTATTAATTCCTGTAATAATTGATAAATGTACATGTACACGTAATTGATGTACAACTAAGATAATCAATTTCAGATCCAATTTTACCAGGCTGgtggattgatttttttttttttttggtgatggTATTATAATTTATACTGATGATTTTTAATCACACAAATCAAATGTCTGTTCACATTTTTCCATATTAAACTA

Function

NR:

description
PREDICTED: von Willebrand factor A domain-containing protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235068.1 True 3354 mRNA 0.41 16 21696521 21707510

Neighbor

gene id symbol gene type direction distance location
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521,LOC107692201,LOC107567044,LOC107552750 coding upstream 159544 21528263 ~ 21536977 (+)
LOC122349977 ctnna2 coding upstream 286026 21387883 ~ 21410495 (+)
lrrtm1 LOC107706126,LOC107551676,LOC107711523,LOC107689474,LOC107558618,LOC107692175 coding upstream 659193 21032623 ~ 21037328 (+)
suclg1 suclg1,LOC107674246,LOC107730526,LOC107664570 coding upstream 985203 20696533 ~ 20711318 (+)
si:dkey-162b23.4 si:dkey-162b23.4,LOC107664549,LOC107746792,LOC107674263 coding upstream 1004226 20683776 ~ 20692295 (+)
trnak-uuu NA coding downstream 176926 21884436 ~ 21884508 (+)
dnaja1 dnaja1,LOC107746728,LOC107603013,LOC107676129,LOC107720316,LOC107551804,LOC108431796,LOC108260608,LOC106591825 coding downstream 177256 21884766 ~ 21890170 (+)
btr01 LOC107676126,LOC107551815,LOC107746733,LOC107720311,LOC107692198,LOC107603009 coding downstream 200636 21908146 ~ 21913580 (+)
si:ch211-151p13.8 si:ch211-151p13.8,LOC107692197,LOC107746734,LOC107676123,LOC107551838,LOC107720312,LOC107602984 coding downstream 206488 21913998 ~ 21920806 (+)
LOC122352554 NA coding downstream 358283 22065793 ~ 22067928 (+)
G5028 smox,LOC107719767,LOC107689473,LOC107551688,LOC107692173,LOC107551695,LOC107567053 non-coding upstream 125372 21568102 ~ 21571149 (+)
G4996 NA non-coding upstream 618625 21077039 ~ 21077896 (+)
G4991 NA non-coding upstream 675795 21017220 ~ 21020726 (+)
G4984 ctnna2 non-coding upstream 765879 20928297 ~ 20930642 (+)
G4976 NA non-coding upstream 975485 20720279 ~ 20721036 (+)
G5078 LOC107719778,LOC107689468,LOC107567043,LOC107692165 non-coding downstream 344 21707854 ~ 21709359 (+)
G5098 NA non-coding downstream 36355 21743865 ~ 21744213 (+)
G5118 dtx4,LOC107746726,LOC107676128,LOC107692161,LOC107603012 non-coding downstream 162390 21869900 ~ 21871709 (+)
G5111 rps6,LOC107603014,LOC107551827,LOC107676127,LOC107720314 non-coding downstream 191540 21899050 ~ 21905109 (+)
G5112 NA non-coding downstream 238301 21945811 ~ 21951335 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 61469 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 75929 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 335081 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 1453172 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 1550665 20142461 ~ 20145856 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 1133178 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 1835554 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 2575972 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 2849287 24556797 ~ 24558929 (+)
G5817 NA other downstream 2996338 24703848 ~ 24704319 (+)

Expression


Co-expression Network