rpl24 (rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676,LOC107662117)


Basic Information

Item Value
gene id rpl24
gene name rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676,LOC107662117
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2739677 ~ 2742411 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235163.1
TCTACATcaattttaggttttatttgaaaaaataatttatatttccGAAATAAGCTCCTTTATAAACCGCATACCCACAATTCCTTTTCCTCTTCCCCTTCTGATACGCCGCCATGAAGGTCGACCTGTGCAGTTTCAGCGGGTATAAAATCTATCCCGGCCATGGCCGGCGATATGCAAGGATCGATGGAAAGGTTTTCCAGTTCCTGAATGCTAAGTGTGAGTCTGCTTTCCTGTCCAAGAGGAACCCCAGACAGATCAACTGGACCGTTCTGTACCGCCGCAAGCACAAGAAGGGCCAGTCTGAAGAGGTCAGTAAGAAGCGCTCCCGTCGTGCTGTGAAGTTCCAGCGTGCCATCACCGGTGCTTCTCTGGCTGAGATCCTGGCCAAGAGGAACCAGAAGCCAGAAGTGCGTAAAGCTCAGAGAGAGCAGGCCATCAGGGCTGCTAAGGAGGCCAAGAAAGCAAAGCAGGCAACTAAGAAACAACCTGTTCAGAGCACCAAGgcCCCTGTCAAAGCCGCAGCCAAACAGAAAATCGCCAAGCCCATGAAGGTCAGCGCTCCTCGTGTTGGTGGCAAGCGCTAAGTTCATGTTTTGgcattttgtgtattaataaaggTTTCACTATCAA

Function

symbol description
rpl24 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL24 (ribosomal protein L24).

NR:

description
PREDICTED: 60S ribosomal protein L24

GO:

id name namespace
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component

KEGG:

id description
K02896 RP-L24e, RPL24; large subunit ribosomal protein L24e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235163.1 True 633 mRNA 0.49 6 2739677 2742411

Neighbor

gene id symbol gene type direction distance location
tmem39a tmem39a,LOC107662110,LOC107570077,LOC107551106,LOC107751086 coding upstream 39453 2691742 ~ 2700224 (+)
ildr1a LOC107751054,LOC107570078 coding upstream 48912 2678298 ~ 2690765 (+)
LOC122351317 ildr2,LOC107662109,LOC107751053 coding upstream 63648 2656133 ~ 2676029 (+)
gpa33a NA coding upstream 84829 2647427 ~ 2654848 (+)
cd247 cd247 coding upstream 165700 2564546 ~ 2573977 (+)
LOC122328837 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC103365236 coding downstream 15672 2758083 ~ 2782184 (+)
LOC122350229 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC108414264,LOC100710496 coding downstream 199359 2941770 ~ 3120820 (+)
slitrk6 slitrk6,LOC107674010,LOC107558904,LOC107730399,LOC107574216,LOC107737039,LOC107698122 coding downstream 1062188 3804599 ~ 3817996 (+)
LOC122352357 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 coding downstream 1265364 4007775 ~ 4011370 (+)
LOC122342374 erbb4a,LOC107674013,LOC107725343,LOC107556266,LOC108440448,LOC107557316,LOC107707608 coding downstream 1478872 4221283 ~ 4232503 (+)
G546 NA non-coding upstream 8957 2726300 ~ 2730720 (+)
G538 NA non-coding upstream 18754 2703522 ~ 2720923 (+)
G527 NA non-coding upstream 112273 2626045 ~ 2627404 (+)
G486 NA non-coding upstream 133600 2603191 ~ 2606077 (+)
G518 NA non-coding upstream 150669 2588687 ~ 2589008 (+)
G719 NA non-coding downstream 543538 3285949 ~ 3286202 (+)
G771 NA non-coding downstream 977853 3720264 ~ 3720539 (+)
LOC122341420 NA non-coding downstream 1277686 4020097 ~ 4024338 (+)
LOC122346127 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 non-coding downstream 1466998 4209409 ~ 4218600 (+)
LOC122346159 LOC107557315,LOC107705456,LOC107725343,LOC107707608,LOC107674013,LOC107667809,LOC107556266 non-coding downstream 1476831 4219242 ~ 4221288 (+)
G482 dusp27 other upstream 143375 2594931 ~ 2596302 (+)
setdb2 LOC107570068 other upstream 181150 2493572 ~ 2558527 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other upstream 212433 2524525 ~ 2527244 (+)
pcid2 pcid2 other upstream 221292 2511572 ~ 2518385 (+)
grtp1a grtp1,grtp1a,LOC107571994 other upstream 250574 2483640 ~ 2489103 (+)
G727 NA other downstream 592247 3334658 ~ 3340876 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other downstream 894296 3636707 ~ 3699093 (+)
G824 NA other downstream 1614287 4356698 ~ 4357260 (+)
G826 NA other downstream 1615596 4358007 ~ 4358296 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 2195770 4938181 ~ 4944841 (+)

Expression


Co-expression Network