LOC122342059 (ncam2,LOC107748174,LOC107756756,LOC107673712,LOC108426076,LOC107721821)


Basic Information

Item Value
gene id LOC122342059
gene name ncam2,LOC107748174,LOC107756756,LOC107673712,LOC108426076,LOC107721821
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 766226 ~ 826226 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235840.1
ATGTCTGTTGGAAGTCTGGCGCTCATCCCCTCCTCCGGCTCTGGGGGCTGTCAAGGCGTGAGCGTAGACAGAGATGGATTGCAGGTGGCTCTCAGGGCCCAGGTGGCACCTGAGAAGCGTTGCCTGCCCATGCAGATTCAGAGGACTCGCATGAAGTCACGCAAATTCCTGCACCCGCTCCCATGCTTGGCCTCTCACTGGTCGCTAGAAGCCATCGGTGAGCCGGTGAGTATAAACTGGTTCAGTCCTCAAGGAGAGCGTATCATCTCCAATCAGAGAGTGATCGTGCACACGGAGGGCGTCCGCTCCAGGCTCACCATCTACAACGCCATCATCGAGGACGCTGGGATATACCGATGCCAGGCTGTGGACGCCAAGGGACAGAGCCAGGAGGCCACAGTGGTGCTGGAGATTTACCAGAAGCTGACCTTCCGCGAGGTGAAGACACCGCAGGAGTTTCGTCAGAGCGAGGACGCCGAGGTCGTCTGTGACGTCATCAGTTCCCCGGTGCCGGCCGTGTCCTGGTTCTACAAGAACCGAGAAATCACGTCTGAGCCCAACAGCAGACTCCAGGTGCTTCCCAGCAACAACCTGCAGATCCTGCGAGTGAGTAAAGCCGACGAGGGAGTGTACCGCTGTGAGGCGCGAGTGGAGGCCCGAGGAGAAATCGATTTCAGGGACATCGTGGTGCTGGTCAACGTTCCTCCGGTTCTGTCCGTGCCGCAGCAGTCGTTCAACGCCACCGCAGACTACCAGGAGTCAGTGACGTTCACCTGCATCACGTCCGGCTCCCCCGACCCTCAGGTGACCTGGTACTGGAAGGGAGTGCACCTCCAGGAATCGGAGCGGTATGTAATGAGAGCTCGAGGTACGACGCTCACCGTTCGAAACATTCAACAGGACGACGGGGGCTCCTACACCTGCAAAGCCTCTAACAAGGCGGGAGAAGTTGAGCACGAACTGTTTCTCAAGGTTTTTGTTCAGCCACACATTACTAAGCTAAGGAATGTGACAGCTGTGGAAGGCAGCGCTGCTATGATCTCCTGCAAGGCTGAAGGTGAACCTTTGCCGGAAATCTCCTGGAGGCGAGCAAGTGATGGACACAGCTTTTCAGATGGAGATAAGaGTTCAGATGGCCGTGTGGAGGTGCGAGGCCGTTATGGTGAATCCATGCTGACTATTGTTGGAGTCAAGCTATCCGACTGGGGGCGCTTTGACTGTGAGGCTCTCAGCAGGATCGGTGGACATCAGAAGAGCATGTTCTTGGATATTGAGTATGCACCAAAGTTTCAGGCCAACCACACTATATTTTTCTCGTGGGAAGGGAACCCGGTGAACATTAGCTGTGATGTTATGTCTAACCCTCCGGCCACAATGCTGTGGAGACGGGAAAAGTTGACCATCCCTAGCGAGGGTGCTGGAAACATGCGTGTATACAGTGCCCCTGGCAGATCACTCCTCGAGGTTACCCCGATGTCAGACAGAGATTTTGGCCGTTACAACTGTACAGCCAGAAACAACATTGGAATGCGTTTTCAGGAGTTCATCCTAGCACAGGCAGATGTTCCCTCAAACCCTTACTCTGTTCGGCTGAGCTCTGTGGCACAGCGCGTGGCCACAGTTACCTTCACGAAACCAGACTCTCATGGCGGCGTACCCATCAGTTACTACCTGGTCAAATACAAAGACATCAGCTCACAGGACTGGAAGGATGTGAAATCACAGGGGACGCAGACAGTCGTGTTGCTCACTAACCTTGAGCCCAACACAACCTATGAGGTGAGAGTAGCCGCGGTGAACGGAAAAGGTCAAGGAGAGTTCAGCCGCATAGAAAGCTTTCAAACTCTGCCCATACGAGAGCCAAGTCCCCCTTCAGTTCAGGGTCAACGAGGGGTGGGTAAGGCGTACAGACTTGGTCTAGTCAAGCAGGATGATGGAGGAATGCCCATCCTGGAGTATATCgtcaaatacaaaacaGATAAAGAAGAGCAGTGGATGACAAAACTGGTTCCAGGTGTGAATGATTTCGTGTTGCTGCAACCGCTCCAGTGGAATACACAGTATGAGGTGGAAATCACTGCACGTAACGTCAAAGGCCTGTCTGAACCCACCTTCGTGAAGTTCTCCATGCCTCAGAAACCTGATATCACAGCAGATTCGCTGTTCAGCGGCCTAGGCCTGGGCGCAGTGGTTGGGCTGGGGTTAGCTGGCCTACTGCTGCTGCTCGTGCTAGTGGACGTCAGCTGCTTCTTCCTGCGCCAGTGCGGCCTGCTCATGTGCATCACCCGCAAGCTCTGCAGCAAAAAGACAGCTACTAGCGGCAAGAGCAAAGAGCTAGAGGAGGGCAAAGCTGCCTACCTGAAATTGCCACTAAAAGAGGAAAACGGTAAGGAGACGCTGAAACCAGACACGATCGAAATCAAAGTTCACGGTGACAACAGCCTACACATGACACAGGAGGACAGTAAAGCATAATGGAGGCCCTGCTATCCTCTAAAAGAACATGCAAAGTGAGCCACCCGGAGACCAACAGCAAGCAAACTAATGAGAATACAAGCAAGAACACGCCAACCAATTGTAAGATCTTTTGTTAGAGACTCGTCGTCGGGGTATCAGAAGAGGCCACGCGATAACTgctttgtgaaacatttttcGGAGGTTGCCGCTCAACAAACAGGCTCCTGTTTATTTGTGCTTGTTCTTGCTTGTTTTGGGCCTTTTTTGGGAGggggttgtttttttgtttttgttttttcaaggcTTTGCTGTTGCTTTGAGTCTGATTCTTTGTTACTTGAAAAGGTGGGTTTACCCCGTAAGCTTCATgttttctcttgctctctcatCCTCTCTTTCTTTGGGATCCGGCTGTTGCACCTTTCCAGTGTGGTTGCTCAAACATTGCTTTTTAATGCGGTACGCGTGGAAATCCCCCACCTCTCTTTGCGGTCCGTGTTGTAGTTTTGGGTCACTGTTTGGGTAACGTGTTTATTTTCTAGCCTTTTTCCCACTATATGTCTCGCCCAAATGCAAAGAAATTACAGAATGCTCAGTATTAAAGCGAGGATCAACCACACTTGACCTCAAACTGAGTAAATGGTACATGGTTGGTCCCGGTATTGAGCGCTGATACATGCCCAACTCTTCGGCTTGAACGATGAATTTCTCATAGATTACAAGTGTTTTTGTGGATGAAAATATGTCCTCGTTTTAAACGCTATTGTTTCAGAGTCAAAGGAGCATAGTATGAGTCATACTTTCATGTCAAGATATTtcggaaacaaaaaaaaagagtgcattTCCTTTAGAAGCGTGTGAAAGTTTGTAAGTGGGTGCATCTGAGCATGGACGTGTTGTCTTTGGGGTGTTTGGATGCGTGTACTAGCGAGCATGGAGTGTAGAAAGAGAGGGACATGTAAAGAAAGTAGAGGTTGCCGAGTTTTACGTGAATATAAggaaaacattataaatacctATTCAAGTACATCAATGTAAATATACTTGTATTTCTTTGGAATGtttcaaaagcagaaaaaaatatgattcattCCAGGTTCTGTCTTAGTGTCGCACATGACTGATTATGAATTATGTTTATCGAAATTGGCTGTCTCTCAAAAATGATACCGTGTCCAACAGACTGAAAGATCTCAAGAGGCAAAGAAGGACAGATGCCCTGGAAACTGGGTACAGATGCATCACAGAGGTATCGCTATAAAATGAGCTTTTTGGAAATCAAATCCATGCCATTTATGGATCTTTTAAAAGACGACGCTTTGGTTGTATGAGAGAGGAGGGGTTTGCCGGTGAACAAGATCTTAGTGTTGCAATAACATGGATGGGAATGGCATACTGCTTAGACGCATGCTCATTTTACCAGTCAAGAGTTTCAGGATTAAGATCCATGAGGTCTTGAGATCCATGTTCATGTTCACTTTAGTTTGGGCCAACAAATTTAtcccaaaaaaagttttttgcattatttcagcATTGTGTTTCATATACACCTGGCTCTCCACATTCAGCGCAATAGAACATTGTGGAATGTTGCCCATTTCTTTTCAGCAATCTAAAGGGAGCACTCCATAAGCCCAACTGTACTTGTGGAATTCTTGTAATCCAGTGTAATTTTTCTTCTGTAAATAAAAGTGTCccaatataaaagtta

Function

symbol description
ncam2 Acts upstream of or within response to hypoxia. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Is expressed in brain; sensory system; and swim bladder. Orthologous to human NCAM2 (neural cell adhesion molecule 2).

NR:

description
PREDICTED: neural cell adhesion molecule 2-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235840.1 True 4168 mRNA 0.49 18 766226 826226

Neighbor

gene id symbol gene type direction distance location
LOC122353666 NA coding downstream 138408 627700 ~ 627818 (-)
trnag-gcc NA coding downstream 327098 439054 ~ 439128 (-)
lztfl1 lztfl1,LOC107701792,LOC107675311 coding downstream 332548 422900 ~ 433678 (-)
ccr9b ccr9b,LOC107598203,LOC107749654,LOC107675310,LOC107726711,LOC107703604 coding downstream 358140 404682 ~ 408086 (-)
gli3 LOC107749627,LOC107747788,LOC107554716,LOC107598194,LOC107694915,LOC107694564 coding downstream 404623 210723 ~ 361603 (-)
farp1 farp1,LOC107730395,LOC107677850,LOC107653673,LOC107560794,LOC107744955,LOC107559785 coding upstream 224520 1050746 ~ 1116435 (-)
kpnb3 kpnb3,ipo5,LOC107677849,LOC107653674 coding upstream 291615 1117841 ~ 1137065 (-)
LOC122353706 NA coding upstream 303273 1129499 ~ 1129637 (-)
rap2ab rap2ab,rap2a,LOC105911819,LOC106582448,LOC106512668,LOC101166017,LOC105933629,LOC103391592,LOC105907999 coding upstream 322446 1148672 ~ 1164935 (-)
slc5a3a slc5a3a,LOC107730390,LOC107677845,LOC107555245,LOC107559792,LOC107746980,LOC107653669 coding upstream 438545 1264771 ~ 1269925 (-)
G99 NA non-coding downstream 42190 723745 ~ 724036 (-)
G73 NA non-coding downstream 317586 448328 ~ 448640 (-)
G72 NA non-coding downstream 318344 447508 ~ 447882 (-)
G70 NA non-coding downstream 324017 441879 ~ 442209 (-)
G66 NA non-coding downstream 343817 422132 ~ 422409 (-)
G125 NA non-coding upstream 64018 890244 ~ 890587 (-)
G231 NA non-coding upstream 147520 973746 ~ 973969 (-)
LOC122347488 NA non-coding upstream 429963 1256189 ~ 1263203 (-)
G244 NA non-coding upstream 456612 1282838 ~ 1284809 (-)
G247 NA non-coding upstream 518072 1344298 ~ 1346789 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 17862 738137 ~ 748364 (-)
G67 NA other downstream 330101 435808 ~ 436125 (-)
G20 NA other downstream 579141 186420 ~ 187085 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other upstream 249962 1076188 ~ 1231647 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 765843 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1862539 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 2310282 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 3181614 4007840 ~ 4014287 (-)

Expression


Co-expression Network