Item | Value |
---|---|
gene id | dmd |
gene name | dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 |
gene type | misc |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056699.1 |
NCBI id | CM032068.1 |
chromosome length | 31761587 |
location | 7204004 ~ 7295829 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
dmd | Predicted to enable actin filament binding activity and zinc ion binding activity. Acts upstream of or within several processes, including sarcomere organization; skeletal muscle organ development; and somatic muscle development. Located in sarcolemma. Is expressed in several structures, including axial mesoderm; axis; chordo neural hinge; musculature system; and somite. Used to study Duchenne muscular dystrophy and muscular dystrophy. Human ortholog(s) of this gene implicated in cognitive disorder; dilated cardiomyopathy (multiple); intellectual disability; and muscular dystrophy (multiple). Orthologous to human DMD (dystrophin). |
description |
---|
putative dystrophin |
id | name | namespace |
---|---|---|
GO:0048741 | skeletal muscle fiber development | biological_process |
GO:0007525 | somatic muscle development | biological_process |
GO:0016203 | muscle attachment | biological_process |
GO:0045214 | sarcomere organization | biological_process |
GO:0061053 | somite development | biological_process |
GO:0042383 | sarcolemma | cellular_component |
GO:0016010 | dystrophin-associated glycoprotein complex | cellular_component |
GO:0005509 | calcium ion binding | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
GO:0003779 | actin binding | molecular_function |
id | description |
---|---|
K10366 | DMD; dystrophin |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043236006.1 | False | 12607 | mRNA | 0.48 | 79 | 7204004 | 7295829 |
XM_043236010.1 | False | 12770 | mRNA | 0.48 | 78 | 7204004 | 7295631 |
XM_043236011.1 | False | 12717 | mRNA | 0.48 | 77 | 7204004 | 7295638 |
XM_043236015.1 | True | 12804 | mRNA | 0.48 | 79 | 7204004 | 7295633 |
XM_043236023.1 | False | 12795 | mRNA | 0.48 | 79 | 7204004 | 7295630 |
XM_043236031.1 | False | 12732 | mRNA | 0.48 | 78 | 7204004 | 7295633 |
XM_043236041.1 | False | 12658 | mRNA | 0.48 | 77 | 7204004 | 7295634 |
XM_043236048.1 | False | 10247 | mRNA | 0.48 | 66 | 7222031 | 7295686 |
XM_043236052.1 | False | 4715 | mRNA | 0.45 | 24 | 7204004 | 7238513 |
XM_043236054.1 | False | 3755 | mRNA | 0.44 | 17 | 7204004 | 7229015 |
XM_043236057.1 | False | 1196 | mRNA | 0.52 | 9 | 7218982 | 7229015 |
XR_006250549.1 | False | 11103 | transcript | 0.50 | 78 | 7205584 | 7295633 |
XR_006250550.1 | False | 10094 | transcript | 0.50 | 69 | 7218986 | 7295679 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
crfb15 | LOC107692625,LOC107723179,LOC107758857 | coding | downstream | 917 | 7197533 ~ 7203087 (-) |
cfap221 | cfap221,LOC107758838 | coding | downstream | 7343 | 7187566 ~ 7196661 (-) |
LOC122344694 | LOC107723159,LOC107565429,LOC107723172,LOC107665982,LOC107758876,LOC107590752,LOC107692684 | coding | downstream | 60151 | 7141333 ~ 7143853 (-) |
LOC122344706 | LOC107565429,LOC107590752,LOC107692683 | coding | downstream | 65524 | 7135760 ~ 7138480 (-) |
zgc:174945 | NA | coding | downstream | 68396 | 7134391 ~ 7135608 (-) |
knl1 | casc5 | coding | upstream | 4119 | 7299948 ~ 7311221 (-) |
sdk1b | sdk1b,LOC107692681,LOC107723157,LOC107665954,LOC107586817,LOC107758841,LOC107565061 | coding | upstream | 22509 | 7318338 ~ 7485657 (-) |
LOC122348313 | LOC107557944,LOC107758859,LOC107577730,LOC107665949,LOC107576538 | coding | upstream | 231256 | 7527085 ~ 7529413 (-) |
brat1 | LOC107723191,LOC107564194,LOC107692679,LOC107758883 | coding | upstream | 237420 | 7533249 ~ 7540360 (-) |
zmp:0000001069 | LOC107723174,LOC107565406,LOC107692713,LOC107758860,LOC107557941,LOC107758862,LOC107665948 | coding | upstream | 277899 | 7573728 ~ 7577469 (-) |
G1632 | NA | non-coding | downstream | 51524 | 7150285 ~ 7152480 (-) |
G1553 | NA | non-coding | downstream | 200303 | 6982959 ~ 7003701 (-) |
G1544 | NA | non-coding | downstream | 201016 | 6958686 ~ 7002988 (-) |
G1532 | NA | non-coding | downstream | 343738 | 6859889 ~ 6860266 (-) |
G1531 | NA | non-coding | downstream | 345943 | 6857795 ~ 6858061 (-) |
LOC122341717 | NA | non-coding | upstream | 1665 | 7297494 ~ 7298145 (-) |
G1660 | knstrn,LOC107723170,LOC107564216,LOC107758858,LOC107586895 | non-coding | upstream | 16423 | 7312252 ~ 7312898 (-) |
G1663 | NA | non-coding | upstream | 20081 | 7315910 ~ 7316318 (-) |
G1781 | NA | non-coding | upstream | 360249 | 7656078 ~ 7660532 (-) |
G1809 | LOC107723197,LOC107692608,LOC107564078 | non-coding | upstream | 447666 | 7743495 ~ 7797446 (-) |
G1642 | NA | other | downstream | 33982 | 7125642 ~ 7170022 (-) |
trpc5a | trpc5a,LOC107564287,LOC107692628,LOC107758875,LOC107590730,LOC108439362 | other | downstream | 69722 | 7071589 ~ 7134282 (-) |
LOC122342514 | NA | other | downstream | 659446 | 6533501 ~ 6544558 (-) |
gaa2 | si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 | other | downstream | 735750 | 6456044 ~ 6468254 (-) |
gng13a | NA | other | downstream | 875663 | 6327023 ~ 6328341 (-) |
mgarpb | LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 | other | upstream | 1196315 | 8492144 ~ 8500212 (-) |
G1926 | NA | other | upstream | 1260211 | 8556040 ~ 8607795 (-) |
LOC122351550 | LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 | other | upstream | 1483383 | 8779212 ~ 8798355 (-) |
G2302 | slc25a4,LOC107656452,LOC107562743 | other | upstream | 3061352 | 10357181 ~ 10401686 (-) |
LOC122347930 | dnah6,LOC106610484 | other | upstream | 3439141 | 10734970 ~ 10799609 (-) |