LOC122342384


Basic Information

Item Value
gene id LOC122342384
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5625710 ~ 5629067 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236157.1
ATGAAGGAGAACATGGTCTCCGTGGGCTACATCAAGCAGGAGAGCGTGGGTGAGACAGTTTCATGCTTCTTGGACTATGTCATGCCTCCCATTTTCAGCCTGCCAGCATCTATGATCCCAGGCAACCGAGGGACCTTCACTCAGTGTGTGGTGGGCGACAACACTaCTAAGATTGAAGCCATCAAGCAGGATAAAGAATCCCAAGCAGAATCTATGCTGAGAACCCAATTCAAGATGGAGCTCATTGTTTACAGTCAAGATGGCACATACAGCCAGAGTCTGCAACATGCAAAGGACAagcaggaagaggaggaagatcAATTTGTGGGTATAGTAATTTCCACAGGTCATGATGCCACTTTGCGTGAGATGAGGTTGCACCTTGAGTCCTATTACATGATTGCAAGCAAGCGTCTAGCTGACCAGATCCCGATGGTGATCCGCTATCTGCTGCTCCAGGAAGCAGCTTCGGAGCTGCAGAGGAACATGTTGCAGTTACTGCATGATAGAGAAGATATAGACCACCTGCTTAAAGAAGACTTTGACATGGGCCAAAAGCGGGAGAGCTTACTGAGGCGCCAGAAACGTCTGATGAAGGCACGCAACCTCTTGCTTACCTTTTAGAATTTACTTTTGTTT

Function

GO:

id name namespace
GO:0009615 response to virus biological_process
GO:0046685 response to arsenic-containing substance biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236157.1 True 639 mRNA 0.48 3 5625710 5629067

Neighbor

gene id symbol gene type direction distance location
mxa mxa,LOC107725377,LOC107565622,LOC107702551 coding downstream 9595 5611908 ~ 5616115 (-)
klf7a klf7a,LOC107725403,LOC107752450,LOC107676060,LOC107674020,LOC107556267 coding downstream 550099 5038724 ~ 5075611 (-)
pard3ba pard3ba,LOC107673991,LOC107750057,LOC107676058,LOC107749732,LOC107549438,LOC107556285 coding downstream 728810 4765299 ~ 4896900 (-)
nrp2a nrp2a,nrp2,LOC107556288,LOC107749808,LOC107750056,LOC107673990,LOC107676043 coding downstream 886250 4673689 ~ 4739460 (-)
fn1b fn1b,LOC107749885,LOC107556289,LOC107674002,LOC107750053,LOC107676051,LOC107549419 coding downstream 1007083 4597080 ~ 4618627 (-)
efnb2b efnb2b,LOC107725384,LOC107701778,LOC107590693,LOC107702517,LOC107705455,LOC107565280 coding upstream 17079 5646146 ~ 5655085 (-)
arglu1b NA coding upstream 27570 5656637 ~ 5661762 (-)
radil radil,LOC107722964,LOC107725399,LOC107564693,LOC107590699 coding upstream 117403 5746470 ~ 5766103 (-)
LOC122347131 LOC107725363,LOC107722975,LOC107590701,LOC103909971 coding upstream 141636 5770703 ~ 5776946 (-)
LOC122353693 NA coding upstream 148504 5777571 ~ 5777657 (-)
G1117 NA non-coding downstream 17792 5579526 ~ 5607918 (-)
G1124 LOC107701616,LOC107565289,LOC107705456,LOC107702505 non-coding downstream 58732 5561377 ~ 5566978 (-)
G1116 LOC107565289,LOC107701616,LOC107705456,LOC107590690,LOC107702505 non-coding downstream 64855 5560618 ~ 5560855 (-)
G1115 NA non-coding downstream 68368 5556880 ~ 5557342 (-)
G1114 NA non-coding downstream 69960 5555490 ~ 5555750 (-)
G1146 NA non-coding upstream 148031 5777098 ~ 5778154 (-)
G1151 NA non-coding upstream 160600 5789667 ~ 5789919 (-)
G1240 NA non-coding upstream 341323 5970390 ~ 5974062 (-)
G1246 NA non-coding upstream 391489 6020556 ~ 6020931 (-)
G1248 LOC107725398,LOC107692671,LOC107722970,LOC107722977,LOC107590704,LOC107564637,LOC107702540 non-coding upstream 402829 6031896 ~ 6033999 (-)
mdh1b mdh1b other downstream 665500 4956119 ~ 4960210 (-)
G820 NA other downstream 1326517 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 1611423 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 2340924 3136508 ~ 3284786 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 2936246 2688765 ~ 2689464 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 215077 5844144 ~ 5853249 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 482396 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 591537 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 638596 6267663 ~ 6274751 (-)
gng13a NA other upstream 697956 6327023 ~ 6328341 (-)

Expression


Co-expression Network