prpf4bb (prpf4bb,LOC107738454,LOC107749644,LOC107598186,LOC107670278,LOC107554722,LOC108442973)


Basic Information

Item Value
gene id prpf4bb
gene name prpf4bb,LOC107738454,LOC107749644,LOC107598186,LOC107670278,LOC107554722,LOC108442973
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 193211 ~ 205559 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238439.1
CTGGCCCTCCTCATAATCTGACTGCAGAAGAAAAGCACAGCGGGCTGCTGGTGAAACAAAATGGCCGATGTGGAAATGGATTTACGAAGCAAGAGACTTAATAACGGGCCAGAGGATTTGGAGAGTCCTGAGAAGAGTGGGAATGAGGATGAAAACGGTGACATGTCTGgagatgatgaagaggagggTGAGGAAGAAGTGGAGGTAAATGGGGAGAAGCAGGACAGTGGTTCCAAACATCACAGCAGTGGCAGCaaacacaagaaaaagaaacacaagcACCGCAGCaagcacaaaaaacacaaacatgcatctGAGGAAGATAAGGACCGCAAACGCAAACATAGACACAAGCATAAGAAGCACAGGCGCAAAGAGGAACCATCCTCTTCACCATCTGTGGCCACCAACAGGAGGGCTGAGGATGGCTCTCCATCACTGGGCAGTGCAACCCTTGATGACAAGGCGCTTCTTGAAGACCTTGAGAAACAAAGAGCACTGATTAAAGCTGAGCTGGACAGCCAGCTGATGGAGGGGAAGGTTCAGTCCGGAATGGGCCTGATTCTACAAGGTTACAATTCTGGCTCAGAAGAGGATGGAGAGGAACAGCGGGCACGTAATGGGGAGCAAGGGCAAAGAACCAGTGGGGGTAAAACACGCTCACCAAGGGACCAGATAAGTAGGGGGTGTAGATCTAAACGGGACTCAACAGACACCAGCAAACCAAGTGTTAAACGGCGCAGTCGCTCTCGTGAGAGAAGTGGTAAGGATGCTAAGCTTGAACGAATGACCAAAATTGTGAAAGAGACTGTTAAGGAGCGTAGCAAGTCCAAAGAGAAAAAACGCTCTCGTAGCAGGGATAAATCCAAAGAGCGTTTAAGGAAATCCCAGTCTCCAGCTGCAAGAAGACGCTCTGCAGAGAGAAAGTCAGATCAGAAGGGACGTTATGATCGACGTTCCTCTCCTCATATAGTTGAGAAGCGGGAACAAGTCACACAAAGATCAAACTCACGAGGACGCAAGAGCCCGTCACGAGATCAGCGATCTCACTCTAAAGATGCCCGGCTGGGTTGCTCAGACACCGATAGAGAAAAGAGGCCTGGTAAGTCTCCGTCTAAAGACACCTCATCTGGGAAAGAGAATCGATCTCCTCATCAGCGTCGAGCTCTTAGCCCTCAACGTCGACGCAGTTCCTCCCCTCGCCATAGGGACCGCCAGCCCAACCAGCCCCCATCGGGTTCTGCAGACCGGAGTTCTAAACTGAACCACTCACCGCCTAGAAACAGGTCACCAGTCAGGAGAAGACAAAGTCGCTCAAATGAGCGCCGGAGAGATTCCCCGTCCAGTAAACGTCGTCGTTTGGATGGAGCTGGGAGATCAAGGGAAACGAGTCCAGCACGGCGCAGAGTGAGCCGCTCACCACTCAGACGTAGGTCTGTATCACCACGGCGACAGCCTCGCTCCTCACCCAGAAGACGAAGTCGATCGCCCCTGAGACGCAGGTCTGCTGAAAGGGACCGATTTGGCCGGTCCAGACAACGACGATCCACCTCCAGAGAGCGTGAGAGGAGGAGGCGGCGAAGTCGGGATGAAGACAAGTTCAAGGGCAGTTTGTCAGAGGGTATGAAAGCAGACCAAGACTCCTCCTCTGAAGAAGTGATGGAGGACTTTGATGctgaagaggaagatgaagaggcTCTGATTGAACAGAGACGACAACAAAGACTTGCTATTGTCCAGaaatataaagcagtaaatgaggacagCAATATGGGCTCCATGGCATCAGAGCCCAGCAGTCCACAGAGCAGCACCCGAAGTCGTTCACCTTCCCCTGATGATATCCTGGAACGGGTAGCAGCTGATGTAAAGGAATATGAGCGAGAGAATGTAAACACTTTTGAGGCCAACATCAAAGCCAAGCACAACCTCATCGCTCAAGAGAAAGAAGGAGCCAACCCAAAGAAGCCCTCAGCACCCGACATGTTCACAGAGTCAGATGACATGTTTGCTGCAGATTTTGACAGTGCCCGACTGAGGGCTGCAGGTATTGGTAAAGATTTTAAGGAAAACCCCAATCTTAGGGATAACTGGACTGATGCGGAAGGATATTACCGTGTGAACATCGGTGAGATACTGGACAAGCGGTATGATGTGTATGGGTACACTGGACAGGGTGTATTCAGTAATGTGGTTAGAGCTAGAGACACTGCCCGTGCTGGCCAGGAGGTGGCAGTCAAGATAATCCGAAACAATGAGCTCATGCAGAAGACTGGACTGAAGGAGCTTGAATTTCTAAAGAAGCTGAATGATGCAGATCCTGATGATAAATTTCACTGTTTGCGGCTCTTCAGACACTTCTACCACAAACAGCATCTCTGTTTGGTTTTTGAGCCTCTCAGTATGAATCTGCGGGAAGTGCTTAAGAAGTATGGTAAAGACGTGGGTTTGCACATCAAGGCAGTTCGTTCCTATAGTCAGCAGCTCTTTTTGGCCCTCAAACTACTGAAACGCTGCAACATCCTACATGCTGACATCAAACCAGACAATATATTGGTGAATGAATCAAAGACCATTCTTAAACTCTGTGATTTCGGCTCTGCGTCTCATGTCGCTGACAATGAAATCACTCCCTACTTAGTCAGCAGATTCTACAGGGCACCTGAAATTGTCATTGGTAAACCGTATGATTATGGCATTGATATGTGGTCAGTTGGCTGCACTCTGTATGAGCTATACACTGGGAAGATCCTTTTCCCTGGCTCTTCTAACAACCACATGCTGAAGCTGGCCATGGATTTGAAGGGCAAGATGCCCAACAAGatGATCCGGAAAGGCCTGTTTAAAGATCAACATTTTGACCAGAACTTGAACTTCCTGTATATAGAGGTGGACAAAGTGACTGAAAGGGAGAAAGTAACTGTCATGAGCACCATTAACCCCACTAAAGATCTGCTCGCGGACATGATCGGAGGTCAGAGATTACCTGAGGATCAGAGAAAGAAGGTCATGCAGCTTAAAGATCTGTTGGACAGTACTCTGATGCTGGACCCAGCTAAACGCATCAGCATCAACCAAGCCCTACAGCACCTTTTCATTCAGGAGAAGATATGATGCTTTCATGTCTAACCTGTGACTGTCCATTGTCCAGGACTGAGCCAATAGACTCAAGTTCAGAATGTTTGTAATCATCACAAGACTttcaattttctatttttattcatgtttttctaGTGACTTTTGTTTTGCCCAATAATTTTTGATTCAGATCTCAGAATggtcttgtttttattgtacataTGAACACATTGTCATTCACTTGAGAGAGAGGCATGTTTAGCAATTATCAGACTTTGTCTTATTTAACTTTGGAAGTGACCAAAATGCTCAAAATGCAGCATAtaataggttaggttagtgttcaGATGTTAAAGGCAAGAAATGGCTGGGCAAGCATATAAGAGAGACAAATTATTTTGTTAGTTATAATGCAAATGCATCCTTTTTGGTGACCCATTTAAACCAGTGGCTTTAATTTAGATTTCTTTTATCTAATCAAGGAGTACACCACTTTTGCTAGTTGAAACAATACATAGTACTTCATGTAGAGCTGTTTAAAATATTGGTTTTGTTCTAGTACATTTATCTCAAATGATGCTAGAGATCACACTAGAATCCTACTTGTCCCATTTTATTTGTCACTGCCCTACAAGCCTGTCCTATTAAGAGATCAATTTTAGAAACAATTTAATGTACGCAGGTAGTTATCGTGTTAGAATCTTAGTGAATGATGCCAAATTGTCACTTTTCGACTGCTAAATTATGAATTTGCCTGTATTTCCAAAAACTCTAAAGCTGTTTTAATTTgagaaatttaattttgaataattagTATCTGTATGTTAGCCACTTGTTGCTAGTTATCTCTGGAGTTTGACACCACATTACAATCCAATTTCAGTATACCAGGCCTGAGATGATTTTTATAGTTGAAAGTCCCCAATGTTAAGGTTATCTGATAGGAAGTGCCTCCCTCGATgcctgcattaaaaaataaagtctcTCAGATATGCCCTGATAGATGGGTAATCACTTATTTTACtgtgtaaataatttagttttcaaagtgtaaaacgttttttttttcctaactgggatttttttgtttttttgaaataaacttgAAAGATATGATCGTGAAGGAAAATTAAAA

Function

symbol description
prpf4bb Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within mRNA cis splicing, via spliceosome and phosphorylation. Predicted to be active in nucleus. Orthologous to human PRPF4B (pre-mRNA processing factor 4B).

NR:

description
PREDICTED: serine/threonine-protein kinase PRP4 homolog

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08827 PRPF4B; serine/threonine-protein kinase PRP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238439.1 True 4213 mRNA 0.45 15 193211 205559

Neighbor

gene id symbol gene type direction distance location
gli3 LOC107749627,LOC107747788,LOC107554716,LOC107598194,LOC107694915,LOC107694564 coding upstream 5164 210723 ~ 361603 (-)
ccr9b ccr9b,LOC107598203,LOC107749654,LOC107675310,LOC107726711,LOC107703604 coding upstream 199123 404682 ~ 408086 (-)
lztfl1 lztfl1,LOC107701792,LOC107675311 coding upstream 217341 422900 ~ 433678 (-)
trnag-gcc NA coding upstream 233495 439054 ~ 439128 (-)
LOC122353666 NA coding upstream 422141 627700 ~ 627818 (-)
G19 NA non-coding downstream 15010 177676 ~ 178201 (-)
G18 NA non-coding downstream 26884 166097 ~ 166327 (-)
G6 LOC107683095,LOC107600734,LOC107716905 non-coding downstream 140623 52167 ~ 52588 (-)
G5 NA non-coding downstream 144684 47787 ~ 48527 (-)
G50 NA non-coding upstream 13020 218579 ~ 221074 (-)
G51 NA non-coding upstream 13370 218929 ~ 221328 (-)
G56 NA non-coding upstream 187740 393299 ~ 393852 (-)
G66 NA non-coding upstream 216573 422132 ~ 422409 (-)
G70 NA non-coding upstream 236320 441879 ~ 442209 (-)
G20 NA other downstream 6126 186420 ~ 187085 (-)
G67 NA other upstream 230249 435808 ~ 436125 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other upstream 532578 738137 ~ 748364 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other upstream 870629 1076188 ~ 1231647 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 1386510 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 2483206 2688765 ~ 2689464 (-)

Expression


Co-expression Network