kpnb3 (kpnb3,ipo5,LOC107677849,LOC107653674)


Basic Information

Item Value
gene id kpnb3
gene name kpnb3,ipo5,LOC107677849,LOC107653674
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1117841 ~ 1137065 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239696.1
GTTCATACCGTCCGGTGTCAGAGGTCGCTTCCCCTGCCGGCTTTCATTCGCTCGTCTCTCTTTCTGAATCCAGCAGCGATGGCGGAGCAGCAGCAGTTCTACCTCTTACTGAGCAACCTGATGAGCCCTGACAACACCGTCAGGAAGCAATCCGAGGAAACGTACGACACCATCCCCGGTCAGACGAAGATCACGTTTTTACTGCAGGCTATCCGTGATGCGTCCGCTGCCGAGGAGGTTAAGCAGATGGCGGCCGTGCTGCTGCGGCGCCTGCTGTCCTCGTCTTTCGAGGAGGTCTATCCCAACCTGACCATCGACGTGCAGACGGCCATCAAGACAGAGCTGCTCGCTGGAATCCAGTCCGAAGGCTCCTCCAACATCCGCAAGAAGGTCTGCGACATCGCCGCCGAGCTCTCTCGCAATCTCATCGATGATGATGGCAACAATCAGTGGCCAGAAATCCTGAAGTTCCTGTTCGATTCGGTGAACTCTCAAGACGTCGGCCTCCGGGAAGCAGCGCTGCACATCTTCTGGAACTTCCCTGGGATTTTTGGCAATCAGCAGCAGCATTACCTGGAAGTGATCAAGCGCATGTTGGTCCAGTGCATGCAGGACCAGGAAAACCCGCAGATTCGAACCCTGGCTGCGCGTGCAGCAGCCTCCTTCGTCCTGTCCAACGAGAGCAACACAGCCTTGCTGAAACACTTTTCAGACCTTCTTCCCGGCATCCTACAGGCGGTGAATGAGTCCTGTTACCGTGGCGACGACTCTGTGCTGAAGTCATTGGTGGAAATTGCAGACACGGCCCCCAAATACCTGAGACCAAACCTAGAAGCCACACTCCAGCTGAGCCTGAAGTTGTGCGGAGACACCAACCTCACAAACATGCAGAGGCAGCTGGCGCTGGAAGTCATCGTCACGCTGTCTGAAACCGCTGCCGCCATGCTGAGGAAACACACCAACATCGTTGCTCAGAGCGTACCTCAGATGTTGAGTATGATGGTGGATctggaggaggacgaggagtgGGCCATGGCTGATGAACTAGAAGATGATGATTTTGACAGTAATGCCGTCGCGGGTGAAAGTGCTCTGGACAGGATCGCGTGTGGCCTCGGAGGAAAGATCGTCCTTCCCATGATCAAGCAGCACATCATGCAGATGCTGCAGAACCCCGACTGGAAGTACAGGCACGCCGGTCTGATGGCGCTCTCTGCGATCGGCGAGGGCTGCCACCAGCAGATGGAGGCCATTCTGAGCGAGATCGTCAGCTTCGTTTTGCTCTTCTGTCAGGATCCTCACCCCAGAGTTCGTTACGCTGCCTGTAACGCTATCGGACAGATGGCCACAGACTTCGCCCCCACCTTCCAGAAGAAGTTCCACGACAAGGTGATCTCGGCGCTCCTGCAGACCATGGAGGATCAGTCGAACCCTCGCGTCCAGGCCCACGCTGCCGCCGCGCTCATCAACTTCACCGAGGACTGTCCCAAAACCCTGCTCGTCCCCTATCTAGACAGCCTCGTCCAGCACCTGCACGTCATCATGGTGGCCAAGCTCCAGGAGCTGATCCAGAAAGGGACCAAACTGGTTCTGGAGCAGGTCGTGACCTCCATCGCCTCTGTGGCTGATACAGCGGAGGAGAAGTTTGTGCCCTACTACGATCTGTTCATGCCCTCGCTCAAACATATCGTGGAGAACGCCGTTCAGAAGGAGCTTCGCCTGCTCCGAGGAAAGACCATCGAGTGCATCAGCCTCATCGGCCTGGCTGTGGGCAAAGAAAAGTTTATGCCGGACGCTTCAGCTGTGATGCAGCTCCTTCTGAAGACACAGACCGATTTCAATGATCTGGAGGATGACGACCCACAGATCTCCTACATGATCTCGGCCTGGGCTCGGATGTGTAAGATCCTGGGGAAGGAGTTCCAGCAGTACCTTCCTGTGGTGATGGGCCCGCTGATGAAGACGGCCTCCATCAAACCTGAAGTGGCTCTGCTTGATACTCAGGACATGGAGAACATGTCTGAAGATGACGGTTGGGAGTTTGTGAATCTCGGAGACCAGCAGAGTTTTGGCATAAAGACGGCAggcctggaggagaaagcaactGCGTGCCAGATGCTGGTGTGCTACGCCAAAGAGCTGAAGGAGGGTTTCGTCGAGTACACGGAGCAAGTCGTCAAGCTGATGGTTCCTCTGCTCAAGTTCTACTTCCATGATGGTGTGCGTGTGGCTGCGGCCGAGTCCATGCCTCTCCTGCTGGAGTGCGCTCGCGTCCGAGGCCCAGAGTACCTCACGCAGATGTGGCACTTCATGTGTGACGCTCTCATCAAGTCCATCGGCACCGAGCCCGACTCGGACGTGCTGTCAGAGATCATGCACTCGTTCGCCAAGTGCATCGAGCTGATGGGAGACGGGTGCCTGAACAACGAGCACTTCGAGGAGCTGGGCGGCATTTTGAAAGGCAAACTAGAGGAGCACTTTAAAAACCAGGAGGTCAGACAAGCCAAGCGTCAAGATGAGGACTACGACGAGCAGGTCGAGGAGACGTTACAAGACGAGGACGACAACGACGTCTACATCCTGACCAAGGTGTCGGACATCCTGCACTCCATCTTCAGCAGCTACAGAGAGAAGGTCCTGCCCTGGTTTGAGCAGTTGCTGCAGCTCATCGTCAATCTGATCTGTCCTCACAGACCCTGGGCGGACAGACAGTGGGGTCTGTGCATATTTGATGACGTCATCGAACACTGCAGCCCTTCTTCCTTCAAATACGCCGAGTACTTCCTGCGGCCCATGATGCAGGCGCTGTGTGACACGAGTCCGGAGGTTCGGCAGGCGGCTGCGTACGGCGTCGGGGTCATGGCTCAGTTTGGAGGAGACAGCTACAGGCCTGCCTTCACAGAGGCCGTGCCGCTGCTTGTGGGCGTGATCCAGTCTCCAGAATCCAGAGCTAAAGAAAACGTCAACGCCACGGAGAACTGCATCTCTGCCGTGGCCAAAGTCATGAAGTACCGGCCCGAGTGCGTCAACGTCAGCGAGATCCTCCCTCACTGGctctcctggctgccgctcaaCGAGGATAAAGAGGAAGCCGTGCACACGTTCAACTATCTCTGTGACCTCATAGAAAGTAACAATCCCATCGTCCTCGGACCTGATAATACCAACCTTCCCAAGATTTTCATCATAATCGCTGACGGTGTTGCGAACGAATCGATTAAAGGAGAAGACGGCTGCAGCAAACGATTGGCCAACGTTATCCGTCAAGTACAAGTTTCCGGAGGCCTCTGGACGCAGTGCGTATCGGCGCTCAACGAGACGCAGCAGAAGGCCATCCAGGACCTCCTGAACACGGCCTGAGCGAGCGACCGAAGCCTTAACCCTGTAAAACAGCCCATCGATTGAGGATTAAAAACTTTGCACCTGGAATTCCGCATCTAGTTTTTTGGCCCTTTCCCTATTTCGACTAAAGAACCGTCACGTGACTTGAGTTTGTGTTGGGCCTCCGAGCCGCCTGGACCCGATCTCTCTCGACGTCTTCACCATCGGGGCCCGGGGATCGTGAGCGTTTCACCTCAACGAGGGCCAACGGCTTCGGAAACCCTCATCTTGAGCAGACGTTGGGGGGGGGGTTTAGGggtttgaaatgaaactaaCAGTCATCCATCGTAGATCTTTAAGAATTTCTGGTGTAGAAATTGTGCTTTTCTCCCTTCAGAGATCAGTTCTAGTTGTTTTGTCAACTCGTGTGTCTGTCGAAGCTGATTTAGGGCCCGGTCCGACTCTTCTTTTGACGGATCGGACCGAATGGACTCGTGTTGGTTGAGCTCGAATGCAGTAGAGCGATGATGCAGCGGTCAAGTCgtcgactttttttttctttggtttttcttttaggttttttgttttctcttcgACGCTGATGTTTGGGGCCAGCGGTTTGCTCCATCTTCGCTGACGATGTCCGTTACGGCTAACATTGTCTGTCATTGGCTCACTTAATCCATGCAATGAAATAAACCACATTGGGAAAACCGGGACTCTGGGTTCAGGCTTCTGATATTATGAAGGAAATGCACAGATCTGAGGCCGGTTGGCTAAGGAGTTGTCACGTGTCTGTGGAACATTTGTATGATATGCAATCTCTCCTGGTTAATCATTTTACAACACTTTCAGTATTAAAGCTGCAAGACATGA

Function

symbol description
kpnb3 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and ventral mesoderm. Orthologous to several human genes including IPO5 (importin 5).
ipo5 Enables RNA binding activity. Involved in ribosomal protein import into nucleus. Located in membrane.

NR:

description
PREDICTED: importin-5

GO: NA

KEGG:

id description
K20222 IPO5, KPNB3, RANBP5; importin-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239696.1 True 4197 mRNA 0.54 26 1117841 1137065

Neighbor

gene id symbol gene type direction distance location
farp1 farp1,LOC107730395,LOC107677850,LOC107653673,LOC107560794,LOC107744955,LOC107559785 coding downstream 1406 1050746 ~ 1116435 (-)
LOC122342059 ncam2,LOC107748174,LOC107756756,LOC107673712,LOC108426076,LOC107721821 coding downstream 291615 766226 ~ 826226 (-)
LOC122353666 NA coding downstream 490023 627700 ~ 627818 (-)
trnag-gcc NA coding downstream 678713 439054 ~ 439128 (-)
lztfl1 lztfl1,LOC107701792,LOC107675311 coding downstream 684163 422900 ~ 433678 (-)
rap2ab rap2ab,rap2a,LOC105911819,LOC106582448,LOC106512668,LOC101166017,LOC105933629,LOC103391592,LOC105907999 coding upstream 11607 1148672 ~ 1164935 (-)
slc5a3a slc5a3a,LOC107730390,LOC107677845,LOC107555245,LOC107559792,LOC107746980,LOC107653669 coding upstream 127706 1264771 ~ 1269925 (-)
ptgfrnb LOC107730397,LOC107555256,LOC107653676,LOC107559799,LOC107677843,LOC107746979,LOC107717917 coding upstream 140435 1277500 ~ 1315538 (-)
si:ch211-132g1.1 NA coding upstream 181725 1318790 ~ 1324793 (-)
si:ch211-132g1.6 NA coding upstream 194618 1331683 ~ 1333824 (-)
G231 NA non-coding downstream 143872 973746 ~ 973969 (-)
G125 NA non-coding downstream 227254 890244 ~ 890587 (-)
G99 NA non-coding downstream 393805 723745 ~ 724036 (-)
G73 NA non-coding downstream 669201 448328 ~ 448640 (-)
G72 NA non-coding downstream 669959 447508 ~ 447882 (-)
LOC122347488 NA non-coding upstream 119124 1256189 ~ 1263203 (-)
G244 NA non-coding upstream 145773 1282838 ~ 1284809 (-)
G247 NA non-coding upstream 207233 1344298 ~ 1346789 (-)
G260 NA non-coding upstream 304023 1441088 ~ 1441512 (-)
G297 NA non-coding upstream 429973 1567038 ~ 1567532 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 369477 738137 ~ 748364 (-)
G67 NA other downstream 681716 435808 ~ 436125 (-)
G20 NA other downstream 930756 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 455004 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1551700 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1999443 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2870775 4007840 ~ 4014287 (-)
G820 NA other upstream 3161245 4298310 ~ 4299193 (-)

Expression


Co-expression Network