tmem39a (tmem39a,LOC107662110,LOC107570077,LOC107551106,LOC107751086)


Basic Information

Item Value
gene id tmem39a
gene name tmem39a,LOC107662110,LOC107570077,LOC107551106,LOC107751086
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2691742 ~ 2700224 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240364.1
CTGATGGCGTCATTTGACGCAGCGTCGGTTTGCCACGTCGGTCTCTAACTGCAGCGCGAGGAACTTTAGcaactttgtgtttttcaggttAACGCTGTAAACGACGAGCAGCGAGCGGCTGTCTGCTGAGTCTCTTCAGAAACACTGTAACAGAGACACAAATGCGCTTCTTACAGAGTTTACGTGACTGATGTCTGCGCTCATGATTGATGTGTGTGTCCGAGACGTGAGGAGCTCGCAGGGATCCACAGACGGAGATGCCCGGGGGCCGCAGGGGTCCCAGTAGACAGCAGCTGAGCCGCTCCGCTCTGCCTTCGCTGCAGACGCTGGTGGGCGGCGGTCTCAGTAATGGGGCGGGGCTCCGGTGCAGCGTGGCCGTCTTCGTAAGCGTGTGTCTCTCTCACAGGAACAGTGGGGTGGTGGGTCTCTCTCTTCCGCTCACGGCCCTCATCAGTCCCGAACCTGTCCGTCATTCCCGTATTCCCGATCTTCCTCTGGACAGTAACCTGCTGTTCGAGGCTCTGCTCTTCCTCTACCTGCTGGTGGCGCTCTTCGTTCAGTACATCAACATCTACAGGACGGTGTGGTGGTCTTCATACAGCCAGCCCTCAGCCTCCACCTCACTGAACTTTCATCTGATGGACTATCACCTAGCGGTCTTCATCACCGTGATGCTGGCCAGAAGACTGGTGTGGACCATCATCTCAGAGgcctCTCTGGCGGTCCCGTCGTCTCTGCTGCGGTACGTGGCTCTGATCACGGCGCGGTTGATCTTGCTGACTCTGTGTGGATGGGTTCTCTGCTGGACCCTCGTCAACCTCTTTAAGAATCACTCCGTGCTCAACCTGCTCTTCTTGGGATATCCGTTCGGTGTTTACGTGCCGCTCTGCTGCTTTCATCAGGAGGGTCGAGCTCCAGCCGCTCCCTCAGATTGTGGATTCTCAGAGCAGGATGGCTCCGACGGGCCTCTGCCTCGACCCAAAGACTTCCTGACGCTACTGCGAGAGAACCTGCGTGATCAGTTCTCCAGCCCGAAGCACATCCCCACACACAGCTGTCCTCCGTCGCCCGAGCTCATCCGCAGCGAGGTGGAGGAGCTCAGGACCGACTTCAACCGCCGCATCAAAGAAGTGCTGTTTAACTCGCTCTTCAGCGCTTATTATGTGGCCTTCCTGCCGCTGTGCTTCGTCAAGAGCACACAGTACTATGACATGCGCTGGTCCTGCGAGCATCTGATCATGGTGTGGATCAATGCGTTCGTGATGCTGATGAGTCAGCTGCTGCCGCCCAGTTACTGTGACCTGCTGCATCGCTCGGCCGCACATCTGGGCCGCTGGCAGCGTCTGGAGCACGGCTCCTACAGCAACACGCCGCAGCACATCTGGTCAGACAGCACCATCTGGCCGCAGGGAGTCCTGGTCCGGCACAGCCGCTGTCTCTATAAAGCCATCGGGCCTTATAACGTGGCCTTGCCCTCCGACGTCTCGCATGCCAGGTTTTATTTCCTCTTCCACAAGCCCCTGCGGATCCTGAACCTGCTGATCGGGATCGAGTCGAGTGTGGTGCTGTATCAGCTGTACTCTCTACTACGCTCCGAGCGCTGGAACCACACGCTCTCGCTGGGCCTCATACTCTTCTGCAACTATTACGTTCTGTTCAAGCTGCTGCGGGACCGGATCGTTCTGGGCAAGGCGTACTCGCACCCGCTCGCCGGCGGCCTGGGCATCAAGACTCACCTGTGTCTCGCGTGACATCCAAATTCTGCCAAAGATTGAAAGGAAAAAGAACTGGAAGAGCTAAAGCCGACCAATCACGACGGGGGACTGGACGGTCCGGTGCTGTTTGATCATTTCCATTGTTACTGTTTTAAGAGTGTTATCTGTTCGTAGAATCTTACATGTCCACTTTGTTTCAATCaaactgtgttaaaaaaaacagcatcaacaggatcttttttttttttttttttttttttttttttttttaaag
>XM_043240370.1
TGGCGTCATTTGACGCAGCGTCGGTTTGCCACGTCGGTCTCTAACTGCAGCGCGAGGAACTTTAGcaactttgtgtttttcaggttAACGCTGTAAACGACGAGCAGCGAGCGGCTGTCTGCTGAGTCTCTTCAGAAACACTGTAACAGAGACACAAATGCGCTTCTTACAGAGTTTACGTGACTGATGTCTGCGCTCATGATTGATGTGTGTGTCCGAGACGTGAGGAGCTCGCAGGGATCCACAGACGGAGATGCCCGGGGGCCGCAGGGGTCCCAGTAGACAGCAGCTGAGCCGCTCCGCTCTGCCTTCGCTGCAGACGCTGGTGGGCGGCGGTCTCAGTAATGGGGCGGGGCTCCGGTGCAGGAACAGTGGGGTGGTGGGTCTCTCTCTTCCGCTCACGGCCCTCATCAGTCCCGAACCTGTCCGTCATTCCCGTATTCCCGATCTTCCTCTGGACAGTAACCTGCTGTTCGAGGCTCTGCTCTTCCTCTACCTGCTGGTGGCGCTCTTCGTTCAGTACATCAACATCTACAGGACGGTGTGGTGGTCTTCATACAGCCAGCCCTCAGCCTCCACCTCACTGAACTTTCATCTGATGGACTATCACCTAGCGGTCTTCATCACCGTGATGCTGGCCAGAAGACTGGTGTGGACCATCATCTCAGAGgcctCTCTGGCGGTCCCGTCGTCTCTGCTGCGGTACGTGGCTCTGATCACGGCGCGGTTGATCTTGCTGACTCTGTGTGGATGGGTTCTCTGCTGGACCCTCGTCAACCTCTTTAAGAATCACTCCGTGCTCAACCTGCTCTTCTTGGGATATCCGTTCGGTGTTTACGTGCCGCTCTGCTGCTTTCATCAGGAGGGTCGAGCTCCAGCCGCTCCCTCAGATTGTGGATTCTCAGAGCAGGATGGCTCCGACGGGCCTCTGCCTCGACCCAAAGACTTCCTGACGCTACTGCGAGAGAACCTGCGTGATCAGTTCTCCAGCCCGAAGCACATCCCCACACACAGCTGTCCTCCGTCGCCCGAGCTCATCCGCAGCGAGGTGGAGGAGCTCAGGACCGACTTCAACCGCCGCATCAAAGAAGTGCTGTTTAACTCGCTCTTCAGCGCTTATTATGTGGCCTTCCTGCCGCTGTGCTTCGTCAAGAGCACACAGTACTATGACATGCGCTGGTCCTGCGAGCATCTGATCATGGTGTGGATCAATGCGTTCGTGATGCTGATGAGTCAGCTGCTGCCGCCCAGTTACTGTGACCTGCTGCATCGCTCGGCCGCACATCTGGGCCGCTGGCAGCGTCTGGAGCACGGCTCCTACAGCAACACGCCGCAGCACATCTGGTCAGACAGCACCATCTGGCCGCAGGGAGTCCTGGTCCGGCACAGCCGCTGTCTCTATAAAGCCATCGGGCCTTATAACGTGGCCTTGCCCTCCGACGTCTCGCATGCCAGGTTTTATTTCCTCTTCCACAAGCCCCTGCGGATCCTGAACCTGCTGATCGGGATCGAGTCGAGTGTGGTGCTGTATCAGCTGTACTCTCTACTACGCTCCGAGCGCTGGAACCACACGCTCTCGCTGGGCCTCATACTCTTCTGCAACTATTACGTTCTGTTCAAGCTGCTGCGGGACCGGATCGTTCTGGGCAAGGCGTACTCGCACCCGCTCGCCGGCGGCCTGGGCATCAAGACTCACCTGTGTCTCGCGTGACATCCAAATTCTGCCAAAGATTGAAAGGAAAAAGAACTGGAAGAGCTAAAGCCGACCAATCACGACGGGGGACTGGACGGTCCGGTGCTGTTTGATCATTTCCATTGTTACTGTTTTAAGAGTGTTATCTGTTCGTAGAATCTTACATGTCCACTTTGTTTCAATCaaactgtgttaaaaaaaacagcatcaacaggatcttttttttttttttttttttttttttttttttttaaag

Function

symbol description
tmem39a Predicted to be involved in negative regulation of autophagosome assembly and negative regulation of autophagosome maturation. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TMEM39A (transmembrane protein 39A).

NR:

description
PREDICTED: transmembrane protein 39A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240364.1 True 1989 mRNA 0.55 10 2691742 2700224
XM_043240370.1 False 1949 mRNA 0.55 10 2691746 2700224

Neighbor

gene id symbol gene type direction distance location
ildr1a LOC107751054,LOC107570078 coding upstream 977 2678298 ~ 2690765 (+)
LOC122351317 ildr2,LOC107662109,LOC107751053 coding upstream 15713 2656133 ~ 2676029 (+)
gpa33a NA coding upstream 36894 2647427 ~ 2654848 (+)
cd247 cd247 coding upstream 117765 2564546 ~ 2573977 (+)
creg1 creg1,LOC107751059,LOC107694464,LOC107551109,LOC107739160,LOC107654633 coding upstream 127323 2561357 ~ 2564419 (+)
rpl24 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676,LOC107662117 coding downstream 39453 2739677 ~ 2742411 (+)
LOC122353699 NA coding downstream 41855 2742079 ~ 2742212 (+)
LOC122328837 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC103365236 coding downstream 57859 2758083 ~ 2782184 (+)
LOC122350229 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC108414264,LOC100710496 coding downstream 241546 2941770 ~ 3120820 (+)
slitrk6 slitrk6,LOC107674010,LOC107558904,LOC107730399,LOC107574216,LOC107737039,LOC107698122 coding downstream 1104375 3804599 ~ 3817996 (+)
G527 NA non-coding upstream 64338 2626045 ~ 2627404 (+)
G486 NA non-coding upstream 85665 2603191 ~ 2606077 (+)
G518 NA non-coding upstream 102734 2588687 ~ 2589008 (+)
G517 NA non-coding upstream 103069 2588445 ~ 2588673 (+)
G512 NA non-coding upstream 108095 2579316 ~ 2583647 (+)
G538 NA non-coding downstream 3298 2703522 ~ 2720923 (+)
G546 NA non-coding downstream 26076 2726300 ~ 2730720 (+)
G719 NA non-coding downstream 585725 3285949 ~ 3286202 (+)
G771 NA non-coding downstream 1020040 3720264 ~ 3720539 (+)
LOC122341420 NA non-coding downstream 1319873 4020097 ~ 4024338 (+)
G482 dusp27 other upstream 95440 2594931 ~ 2596302 (+)
setdb2 LOC107570068 other upstream 133215 2493572 ~ 2558527 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other upstream 164498 2524525 ~ 2527244 (+)
pcid2 pcid2 other upstream 173357 2511572 ~ 2518385 (+)
grtp1a grtp1,grtp1a,LOC107571994 other upstream 202639 2483640 ~ 2489103 (+)
G727 NA other downstream 634434 3334658 ~ 3340876 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other downstream 936483 3636707 ~ 3699093 (+)
G824 NA other downstream 1656474 4356698 ~ 4357260 (+)
G826 NA other downstream 1657783 4358007 ~ 4358296 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 2237957 4938181 ~ 4944841 (+)

Expression


Co-expression Network