tuba8l2 (tuba8l2,LOC107750365,LOC107556293,LOC103042625,LOC108411703,LOC107549435)


Basic Information

Item Value
gene id tuba8l2
gene name tuba8l2,LOC107750365,LOC107556293,LOC103042625,LOC108411703,LOC107549435
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4548452 ~ 4554686 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240593.1
CTCTGTGCTGCTGTAGGTATAAAATCAAACTCCTGTCAGTGAGACGGTGAGACTGTCTCACTCATACCCCATTGCAGGTACGCAGTGAGAGGGCTGAAGGGATCTTCAGACTATTTTCCTGGCAAAAATCCCGATTCCAAAGCAAAATGCGTGAGTGCATCTCTGTCCACGTCGGCCAGGCCGGCGTCCAGATGGGGAACACCTGCTGGGAGCTGTACTGTCTAGAACACGGTATCCAGCCCGACGGCCAGATGCCCAGCCACAAACCAGTGGGCGGCCATGATGACTCCTTCACTACCTTCTTCAGTGAGACTGGAGCTGGCAAATACGTGCCACGTGCCATCTTTGTAGACCTTGAGCCAACTGTCATTGACGAGGTCCGCACAGGCACCTATCGTCAGCTGTTTCATCCCGAGCAGCTCATTTCAGGCAAAGAGGATGCAGCGAATAACTACGCCCGTGGGCACTACACCATCGGCAAGGAGATCATTGACTCCGTACTGGACCGCATACGCAAACTGGCTGACCAGTGCACAGGGCTGCAAGGTTTCCTGGTCTTCCACAGCTTCGGTGGAGGCACGGGCTCAGGCTTCACCTCCCTTCTGATGGAGCGCCTCTCTGTCGACTTCGGGAAGAAGTCCAAGCTGGAGTTTGCCATTTATCCGGCTCCACAGGTGTCTACGGCCGTGGTGGAGCCGTACAACTCCATCCTGACCACTCACACCACCCTGGAGCACTCCGACTGTGCCTTCATGGTGGACAACGAGGCCATCTACGACATCTGCAGGAGGAACCTGGACATCGAGCGCCCGTCCTACACCAACCTCAACCGGCTCATCAGCCAGATCGTTTCCTCCATCACCGCCTCTCTGCGCTTCGACGGCGCCTTGAACGTCGACTTGACGGAGTTCCAGACCAACCTGGTGCCCTACCCTCGTATCCACTTCCCCCTGGCCACGTACGCTCCGGTCATCTCCGCCGAGAAGGCCTACCACGAGCAGCTCTCGGTGGCTGAGATCACCAACTCGTGTTTCGAGCCCAGCAACCAGATGGTGAAGTGCGATCCTCGGCACGGGAAGTACATGGCCTGCTGTTTGCTGTACAGGGGGGACGTGGTGCCAAAAGACGTCAACGTCGCCATCGCAGCCATCAAGACCAAAAGAAGCATCCAGTTTGTGGACTGGTGTCCCACCGGCTTCAAGGTGGGCATCAACTATCAGCCCCCGACGGTGGTTCCCGGAGGAGACCTGGCCAAGGTGCAGCGAGCCGTGTGCATGCTGAGCAACACCACGGCCATCGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCCAAGAGAGCCTTCGTGCACTGGTACGTGGGAGAAGGCATGGAAGAGGGAGAGTTCTCTGAGGCCAGAGAAGACATGGCAGCTCTGGAGAAGGATTACGAAGAAGTGGGCATCGATTCATTtgaagaggatgaggaggggGAAGAGTTCTAAAGGGAaagtgttgttcttttttttttctaccaaataaaaagccaaataaaagaaagattttaa

Function

symbol description
tuba8l2 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in gill. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 22. Orthologous to human TUBA4A (tubulin alpha 4a).

NR:

description
tubulin alpha-4A chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240593.1 True 1559 mRNA 0.56 4 4548452 4554686

Neighbor

gene id symbol gene type direction distance location
spry2 spry2,LOC107549433,LOC107750630,LOC107674014,LOC107676062,LOC107750049,LOC107556294 coding upstream 49213 4495194 ~ 4499239 (+)
LOC122342374 erbb4a,LOC107674013,LOC107725343,LOC107556266,LOC108440448,LOC107557316,LOC107707608 coding upstream 315949 4221283 ~ 4232503 (+)
LOC122352357 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 coding upstream 537082 4007775 ~ 4011370 (+)
slitrk6 slitrk6,LOC107674010,LOC107558904,LOC107730399,LOC107574216,LOC107737039,LOC107698122 coding upstream 730456 3804599 ~ 3817996 (+)
LOC122350229 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC108414264,LOC100710496 coding upstream 1427632 2941770 ~ 3120820 (+)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding downstream 819 4555505 ~ 4561710 (+)
atic atic,LOC107556291,LOC107750210,LOC107674004,LOC107549437,LOC107750055,LOC107676052 coding downstream 35345 4590031 ~ 4597077 (+)
LOC122346000 cpo,LOC107556274,LOC108440461,LOC108258336 coding downstream 90248 4644934 ~ 4649367 (+)
LOC122346016 cpo,LOC107556274,LOC108440461 coding downstream 97946 4652632 ~ 4657892 (+)
LOC122346006 cpo,LOC107556274,LOC108440461 coding downstream 105184 4659870 ~ 4664510 (+)
G852 NA non-coding upstream 5504 4540990 ~ 4542948 (+)
G857 NA non-coding upstream 44631 4503532 ~ 4503821 (+)
G856 NA non-coding upstream 45975 4502241 ~ 4502477 (+)
G815 NA non-coding upstream 249254 4294053 ~ 4299198 (+)
LOC122346159 LOC107557315,LOC107705456,LOC107725343,LOC107707608,LOC107674013,LOC107667809,LOC107556266 non-coding upstream 327164 4219242 ~ 4221288 (+)
G843 NA non-coding downstream 21458 4576144 ~ 4599814 (+)
G847 LOC107749885,LOC107750053,LOC107676051 non-coding downstream 53845 4608531 ~ 4609874 (+)
G869 NA non-coding downstream 58886 4613572 ~ 4614130 (+)
G870 NA non-coding downstream 60132 4614818 ~ 4615402 (+)
G872 NA non-coding downstream 61432 4616118 ~ 4616939 (+)
G826 NA other upstream 190156 4358007 ~ 4358296 (+)
G824 NA other upstream 191192 4356698 ~ 4357260 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other upstream 849359 3636707 ~ 3699093 (+)
G727 NA other upstream 1207576 3334658 ~ 3340876 (+)
G482 dusp27 other upstream 1952150 2594931 ~ 2596302 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 383495 4938181 ~ 4944841 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other downstream 412500 4967186 ~ 4977263 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other downstream 424439 4979125 ~ 5025914 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other downstream 1324774 5879460 ~ 5881134 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other downstream 1502718 6057404 ~ 6087655 (+)

Expression


Co-expression Network