cnppd1 (cnppd1,LOC107706838,LOC107676054,LOC107750058,LOC107549439,LOC107556284)


Basic Information

Item Value
gene id cnppd1
gene name cnppd1,LOC107706838,LOC107676054,LOC107750058,LOC107549439,LOC107556284
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4932455 ~ 4937679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240606.1
TGAATACGTCGCTACGCAGCTGTCACGGCGGAGAGAGAGGGCGCCTCCACGACGCCTTCCTTCGGCCTTTCTGTGTTTTCGGTCCTTTAAAATTAACGCCGGAGACCCAAAATGGATTTTGGAGATCTGTTTGACGAGCGAACGTTCACGTTTTCCGACTTCCAGGAGTTTACGTTTCTGCCTGGACACGAGCAGTGGTCAGAGAGAGTGAGGAAACGACTGTATTACGGTCTGGACTCTGACAGCCCTTTGGATGCTTTATCATGTCCCATGACAGATATTGCTGTGGAACTGCTCCAGAAATCTGCCCCGAGTCCCATAAGGAAGCTCCATAAGAAATACGCTGCACACGTAGCCAGGGAAGCATGTATATCTCCCTGCGCTATGATGTTGGCCTTGATATACATTGAAAGACTTCGACACAGAAATCCCGAATACCTGCAACAGATCTCATCCTCAGACCTCTTTTTGATATCCATGATGGTGGCCAGTAAGTATTTGTACGATgaaggagaagaggaagaggtttTCAACGATGAATGGGGCACTGCGGCCAAGCTGGATGTTCAGACTGTCAACACTCTGGAGATGAACTTCCTCAATGCGATCGACTGGAACCTCTTCACGGAGCCCGGTGACTTCTTTAAAGTCCTCAATCAGGTGGAAAGCAGCATTGCGGAACGACAAGGAATGAAGCGAGGCTGGTTCACCTACACGGATCTCTGTGTTTTGTTGGAGCAAACCAATTGGAGGGAAGCTCTATCAGCTATCTACCAGCACTTTACCAAGGTTACCTGTATACTGGGTCTCCTGTACTTGACTAGCGTAGCCGGTCTCATCGCTTCCTCCACCGTCATCCACCAGCTCGGCCGTCTTCCCAATACCAGCCGCACTCACTCGGACCCGATGAAGCACGCCTCCATCGAGTCACCAGCACTTCTTCTCCCGCCGCGGCCGACCTCAAGCCTCCACTGCTGCGTCCTGACCAACGACAGCTCGAGGCCAGATCAGCGGGGTTCTACCTCTTCATCCTACCAGGATATGGTGCTTTGCCTCTGGGGCTCCGTCGTCTCCGCTCTCTCCTACTCGCAGGCCTCGTCCGACATCCAGCCACAAGACTGTTTGGCGTCCGAAGTGATCTGTCGCGGTCACATGGACGGTGTCCCTCAGTGCGCAATAGCTCGCAATGACTCGGCGCCTCTTTCCTCTCCGTGGCGCGCTCGTCTCGCGGCACTTTGGCTTGAGTTCGCTCCGTTTGGTGAAAGCCTGATATACTCAGACCCCCATTTTAGCTCCATGCCGCCGTTGCGAAGATGTTGCCCGGAGACGACGTTGCCGCTAGGAAAATCACCGTCTCTTCTCATGCCCGGCTAGACGAgtcagtaaaatgtaaatgcattcaacTAAAACGCAACCAGCAAAGTTTACGTACGCAGTCCGTTCTCTCGGTTTTCTTTAGTGTTGTTTACGAACCAGCCAAATGTCTGGGTTATAACCGGGTTGTGGTGGGATATCAGCATGTTGGGGAGAAGTTTGTAAGGAGGCTTATTACAGAATGCTGATTAacagtttgacttttttttttttttttttttttttgatgtgtgATGCAGTGCGCTAACGCAGTACGAACGATCcaggctttctttttttctttcgctTTCCGGATGGGTTACTTTGGCTGATTTTTAGATGTTACGTGAAACCTCTAAAGCATCCAAGCAAAAACAATGGCAGGCGGTTAACAAAAGGCTCTGCTGTTACTCACGGAAGCGCGTGTTCTCGTTTTGAATAGTTCGCATGGTTTTGCGCAACACGCCAATGTCCCGAGGaggactgttttgttttgaagttcCTTCCTGTGAAAGCCTTTTATTTTCAGGTTGGGAAGCAGTTTGAGTTTAAGCCTGGTTTGGTTCTCGTTGCTTCAGGAAGGAAGGGTAGGATAAAAACAGAAAGGGATCGTTTTTACAGTGTCGGTTAGATTGTAATGGTCAGATAGTTTATGCCATACCTTGTCCACAAAGCGTTCATCGCGGATTGCTTTAGTTTGTAAAAAATAACCCTCAATATTTTCATATCCTCAAGTAGTAAATTATTGcagatttgttttcattgctTGACTTTGAGATTAGTTTTGGCTTTGTTGTATGTTCTTTAAACATAATGTAATTCAGCAAATGTTATTAAGACATTTGGCAAAAAAAGCACCCTTTAATACCTGATTTAGTGAGCTCTTACATATCCACCATTATTTGTTAATGGCTtccaaagtctttttttttttctccaaattttgtacattttgtatagaaataataaaaacatacagctgcagcaatgaaaagaataaaaacatattaatctCA

Function

symbol description
cnppd1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in nucleus. Orthologous to human CNPPD1 (cyclin Pas1/PHO80 domain containing 1).

NR:

description
protein CNPPD1-like isoform X1

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240606.1 True 2369 mRNA 0.47 8 4932455 4937679

Neighbor

gene id symbol gene type direction distance location
abcb6a abcb6,abcb6a,LOC107676041,LOC106574324 coding upstream 477 4922527 ~ 4931978 (+)
LOC122346006 cpo,LOC107556274,LOC108440461 coding upstream 267945 4659870 ~ 4664510 (+)
LOC122346016 cpo,LOC107556274,LOC108440461 coding upstream 274563 4652632 ~ 4657892 (+)
LOC122346000 cpo,LOC107556274,LOC108440461,LOC108258336 coding upstream 283088 4644934 ~ 4649367 (+)
atic atic,LOC107556291,LOC107750210,LOC107674004,LOC107549437,LOC107750055,LOC107676052 coding upstream 335378 4590031 ~ 4597077 (+)
retreg2 fam134a,LOC107706836,LOC107676053,LOC107556270,LOC107750069,LOC107673992 coding downstream 8160 4945839 ~ 4955043 (+)
fastkd2 LOC107673994 coding downstream 22645 4960324 ~ 4966920 (+)
si:ch211-93g23.2 si:ch211-93g23.2,LOC107725372,LOC107674017,LOC107556277 coding downstream 208229 5145908 ~ 5148890 (+)
ube2f ube2f,LOC107725407,LOC107556276,LOC107674019,LOC107707607,LOC107566887 coding downstream 211349 5149028 ~ 5156356 (+)
erbb4a erbb4a,erbb4,LOC107674013,LOC107707608,LOC107725343,LOC107667809,LOC107557316,LOC108440448,LOC101079286 coding downstream 220300 5157979 ~ 5294440 (+)
LOC122346140 NA non-coding upstream 13660 4896504 ~ 4918795 (+)
LOC122346166 NA non-coding upstream 304537 4624047 ~ 4627918 (+)
G853 NA non-coding upstream 312726 4619243 ~ 4619729 (+)
G872 NA non-coding upstream 315516 4616118 ~ 4616939 (+)
G870 NA non-coding upstream 317053 4614818 ~ 4615402 (+)
G948 NA non-coding downstream 39743 4977422 ~ 4977914 (+)
G1016 NA non-coding downstream 101041 5038720 ~ 5101322 (+)
LOC122346173 NA non-coding downstream 189811 5127490 ~ 5138854 (+)
G1036 NA non-coding downstream 219043 5156722 ~ 5156981 (+)
LOC122344626 NA non-coding downstream 466933 5404612 ~ 5408298 (+)
G826 NA other upstream 574159 4358007 ~ 4358296 (+)
G824 NA other upstream 575195 4356698 ~ 4357260 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other upstream 1233362 3636707 ~ 3699093 (+)
G727 NA other upstream 1591579 3334658 ~ 3340876 (+)
G482 dusp27 other upstream 2336153 2594931 ~ 2596302 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 502 4938181 ~ 4944841 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other downstream 29507 4967186 ~ 4977263 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other downstream 41446 4979125 ~ 5025914 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other downstream 941781 5879460 ~ 5881134 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other downstream 1119725 6057404 ~ 6087655 (+)

Expression


Co-expression Network