LOC122346000 (cpo,LOC107556274,LOC108440461,LOC108258336)


Basic Information

Item Value
gene id LOC122346000
gene name cpo,LOC107556274,LOC108440461,LOC108258336
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4644934 ~ 4649367 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240618.1
TGGTTTCTCTGTATTTCAATCAGATCAGAGTTCTTTATAAGTCACTGTCAGGCTGTACTAGGTTCATACCGTCAGGTTCAACAAGCCTGGATAACATGAGGGGCTTAGTAATATCTGTCCTGGTGGTCTTGGCTCTGGTGGCTCAGGACAGCTCTGCTGGTGGACTGGAACACAGATCATATGACTACACGAAGTATCACACCATGGATGAGATCTCAGCCTGGATGAATCAGATGGAAAGGGAAAACCCAGACGTTGTGTCCAGCATGATCTATGGACAAACTTATGAGAACAGGAACATTACATTACTAAAGATCGGCCTCAACAGCAGCACACCCAAGAAAGCTGTTTGGATGGACTGCGGGATTCATGCCAGAGAATGGATTGCTCCAGCTTTCTGCCAGCATTTTGTTAAAGAGATCCTGGGATCCTTCAAAACAGACTCGAAAGTGAACATGTTGCTTAAAAACCTGGACTTCTACATCACCCCAGTGCTGAACATGGACGGATATATTTACTCCTGGAGGGATAACACAACTCGACTATGGAGGAAGTCCAGATCACCAGGGACTGGAAACTGCACATGTTATGGCACTGATCTTAACCGCAACTTTTACGCTAACTGGGGGATGGTGGGGATCTCCAGGGATTGCTGTTCAGACATCTACAACGGACCGACTGTTCTTTCTGAACCAGAGGCCAAAGCAGTCACTGACTTTTTGGGATCACATCAAAACCAACTGCTCTGTTACCTCACCATCCACTCGTACGGTCAGCTTATCCTCGTCCCGTACGGACACCCCAACATCTCAGCACCCAATTATGATGAACTGATGGAAGTAGGTCTCGCTGCAGCTAAAGCCATCAAAGCAGTGCATGGGAAGAGCTACAAAGTGGGAACTCCACCTGATATACTGTATGCAAACTCTGGCTCTTCGCGTGATTTTGCGAGGCTCATAGGGATTCCATACTCCTTTACGTTTGAGTTACGAGATGAAGGACACTACGGCTTCCTTCTACCTGAGGATCAAATCCAGCCCACATGTGAAGAAGCGTACCAGGGTGCAATGTCCATCATAAACTATGTCCATGATAAGAATTTCAAAAGTGCAGCGATTACAGTCACAGCCACACTGTGGACAACACTGACCGCCTTATGGATCTCAAGTGCTAATGTGTTTTAGaccatttttcttaaaaaagggtcatgtgattttatttttcaaaaatgcttgttgttttatttaatgctcaAACAAGAACTgtgt

Function

symbol description
cpo Enables metallocarboxypeptidase activity. Predicted to be involved in proteolysis. Is anchored component of plasma membrane. Is expressed in intestinal epithelium. Orthologous to human CPO (carboxypeptidase O).

NR:

description
PREDICTED: carboxypeptidase O

GO: NA

KEGG:

id description
K23009 CPO; carboxypeptidase O

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240618.1 True 1268 mRNA 0.45 9 4644934 4649367

Neighbor

gene id symbol gene type direction distance location
atic atic,LOC107556291,LOC107750210,LOC107674004,LOC107549437,LOC107750055,LOC107676052 coding upstream 47857 4590031 ~ 4597077 (+)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding upstream 83224 4555505 ~ 4561710 (+)
tuba8l2 tuba8l2,LOC107750365,LOC107556293,LOC103042625,LOC108411703,LOC107549435 coding upstream 90248 4548452 ~ 4554686 (+)
spry2 spry2,LOC107549433,LOC107750630,LOC107674014,LOC107676062,LOC107750049,LOC107556294 coding upstream 145695 4495194 ~ 4499239 (+)
LOC122342374 erbb4a,LOC107674013,LOC107725343,LOC107556266,LOC108440448,LOC107557316,LOC107707608 coding upstream 412431 4221283 ~ 4232503 (+)
LOC122346016 cpo,LOC107556274,LOC108440461 coding downstream 3265 4652632 ~ 4657892 (+)
LOC122346006 cpo,LOC107556274,LOC108440461 coding downstream 10503 4659870 ~ 4664510 (+)
abcb6a abcb6,abcb6a,LOC107676041,LOC106574324 coding downstream 273160 4922527 ~ 4931978 (+)
cnppd1 cnppd1,LOC107706838,LOC107676054,LOC107750058,LOC107549439,LOC107556284 coding downstream 283088 4932455 ~ 4937679 (+)
retreg2 fam134a,LOC107706836,LOC107676053,LOC107556270,LOC107750069,LOC107673992 coding downstream 296472 4945839 ~ 4955043 (+)
LOC122346166 NA non-coding upstream 17016 4624047 ~ 4627918 (+)
G853 NA non-coding upstream 25205 4619243 ~ 4619729 (+)
G872 NA non-coding upstream 27995 4616118 ~ 4616939 (+)
G870 NA non-coding upstream 29532 4614818 ~ 4615402 (+)
G869 NA non-coding upstream 30804 4613572 ~ 4614130 (+)
LOC122346140 NA non-coding downstream 247137 4896504 ~ 4918795 (+)
G948 NA non-coding downstream 328055 4977422 ~ 4977914 (+)
G1016 NA non-coding downstream 389353 5038720 ~ 5101322 (+)
LOC122346173 NA non-coding downstream 478123 5127490 ~ 5138854 (+)
G1036 NA non-coding downstream 507355 5156722 ~ 5156981 (+)
G826 NA other upstream 286638 4358007 ~ 4358296 (+)
G824 NA other upstream 287674 4356698 ~ 4357260 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other upstream 945841 3636707 ~ 3699093 (+)
G727 NA other upstream 1304058 3334658 ~ 3340876 (+)
G482 dusp27 other upstream 2048632 2594931 ~ 2596302 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 288814 4938181 ~ 4944841 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other downstream 317819 4967186 ~ 4977263 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other downstream 329758 4979125 ~ 5025914 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other downstream 1230093 5879460 ~ 5881134 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other downstream 1408037 6057404 ~ 6087655 (+)

Expression


Co-expression Network