mnx2b (mnx2b,LOC107750883,LOC107674001,LOC107556279,LOC107676047)


Basic Information

Item Value
gene id mnx2b
gene name mnx2b,LOC107750883,LOC107674001,LOC107556279,LOC107676047
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4569834 ~ 4574420 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240702.1
TACACTTCTAAACAAAACAgcgcctatatatatatatttatagtttgatAAAGCGCTCGTATTCTTTCCGGGagcgttttatttttctgcgTAAAAGGTTTTGATATAGGCTGCTTGAATTACTCTGTACGTCTCACCGTTCCTAATGGGTAAATATCAGTCAGACTCACtctaaatatctattttattagaAGGGGAAATATAAGTAATCGCGATTAATACGCATGCATCTGTGCGTAAAACGCGGCTATCCGAGTGTCTCCCCGCGCAGTTCGTAACACCCCAAAAGCGTCGCAATGGAAAAATCAAAGAACTTCAGGATCGACGCGCTTCTGGCTGAAGAACCACACCGAGGGAGCCGAGAAGTGTCGCCTGGACTGAGCAGCGACAGCCCGACGGGGAGCCCGGTGTCCTGCAGGCGCGCAGACACTCCGTCCCCGCGCGGGACCCCTGGTGCCATACACCTCCAAACCGGAATCATACCCAAACCAGGGCTGCTCAATCTCCCACACCCAGGACTCACTTCGCTTCCAGGCATGTACACGACGCCCATGTACCCCATTTCAGCTTTGGGAGGTCAGCACCCTGCCCTGGCGTACTCGGGTTTTACGCAGCTGACGCAGCCGTACCCGGAGCAGCTGAAGGCGGCGGCGATGGCCGGGTCTTTACCGCTGGAGCACTGGATACGAGCCGGCATCATGGTACCACGACTGCCCGATTACACCTGTGAGTGGGGTAGCATTCAGATGACAGCCCCCCAGTCCGGTCTGATGGGTAAATGTCGTAGGCCGAGGACGGCGTTTACCAGTCAACAGCTACTGGAGCTGGAAAACCAGTTTAAACTTAACAAGTACCTTTCCAGACCAAAGCGCTTCGAAGTGGCCACATCGCTCATGCTGACTGAGACACAGGTCAAGATCTGGTTCCAGAACCGGCGAATGAAGTGGAAACGCAGCCGTAAGGCTAAAGAACAGGCCGCGCAGGTCGAGGTCGAGCGTCAACGCGGCGGAACCAAATCGACCAATGAGAGGCCGGGGAGAGACGGCCGCAGGGCCATCGCTCAGAGTGTGGAGGAGCACGAGGAGGACGACGATcttgaggaggaggaggaggaagaggaggaggaagaggaagggcAACACAAATTCGTAAACGACAACCTCAACGTAACACGTTCCACAGACTTTCTGCACCATGCGTCTGCGTTAAGATACCACCCCGACAGCCCGTTCTCTGACGACGACATGGAGGAGGTGGGAGGAGCCGACAGGAAGATCGGGGCGGGGTTATGAAAAGATATTTATATGGAACAGTGCAACAATATGCAACGATAAAGTTAAAGAACAGAGACTGCAAATGCCAAACTATTTAGCCACGCAAAAAGCCAGAATAAATTTCACAGATATGTGATGGTGTTGGTAAGTACAGGTGCCGATGAAACTCATACAGAGTAAACATTAAATGTAGTAATAAACGTTCAAGCTGTGTTCAAAAACTTGAAGACAGCAAAGGCCATCACAgatcctctctttctctctctacacatgcatacactactgttcaaaagtttggggttattaagattttttatttagcaaggatgtattaaattcaaattaaattggattgtttaactgtt
>XM_043240711.1
TACACTTCTAAACAAAACAgcgcctatatatatatatttatagtttgatAAAGCGCTCGTATTCTTTCCGGGagcgttttatttttctgcgTAAAAGGTTTTGATATAGGCTGCTTGAATTACTCTGTACGTCTCACCGTTCCTAATGGGTAAATATCAGTCAGACTCACtctaaatatctattttattagaAGGGGAAATATAAGTAATCGCGATTAATACGCATGCATCTGTGCGTAAAACGCGGCTATCCGAGTGTCTCCCCGCGCAGTTCGTAACACCCCAAAAGCGTCGCAATGGAAAAATCAAAGAACTTCAGGATCGACGCGCTTCTGGCTGAAGAACCACACCGAGGGAGCCGAGAAGTGTCGCCTGGACTGAGCAGCGACAGCCCGACGGGGAGCCCGGTGTCCTGCAGGCGCGCAGACACTCCGTCCCCGCGCGGGACCCCTGGTGCCATACACCTCCAAACCGGAATCATACCCAAACCAGGGCTGCTCAATCTCCCACACCCAGGACTCACTTCGCTTCCAGGCATGTACACGACGCCCATGTACCCCATTTCAGCTTTGGGAGGTCAGCACCCTGCCCTGGCGTACTCGGGTTTTACGCAGCTGACGCAGCCGTACCCGGAGCAGCTGAAGGCGGCGGCGATGGCCGGGTCTTTACCGCTGGAGCACTGGATACGAGCCGGCATCATGGTACCACGACTGCCCGATTACACCTCAGCCCCCCAGTCCGGTCTGATGGGTAAATGTCGTAGGCCGAGGACGGCGTTTACCAGTCAACAGCTACTGGAGCTGGAAAACCAGTTTAAACTTAACAAGTACCTTTCCAGACCAAAGCGCTTCGAAGTGGCCACATCGCTCATGCTGACTGAGACACAGGTCAAGATCTGGTTCCAGAACCGGCGAATGAAGTGGAAACGCAGCCGTAAGGCTAAAGAACAGGCCGCGCAGGTCGAGGTCGAGCGTCAACGCGGCGGAACCAAATCGACCAATGAGAGGCCGGGGAGAGACGGCCGCAGGGCCATCGCTCAGAGTGTGGAGGAGCACGAGGAGGACGACGATcttgaggaggaggaggaggaagaggaggaggaagaggaagggcAACACAAATTCGTAAACGACAACCTCAACGTAACACGTTCCACAGACTTTCTGCACCATGCGTCTGCGTTAAGATACCACCCCGACAGCCCGTTCTCTGACGACGACATGGAGGAGGTGGGAGGAGCCGACAGGAAGATCGGGGCGGGGTTATGAAAAGATATTTATATGGAACAGTGCAACAATATGCAACGATAAAGTTAAAGAACAGAGACTGCAAATGCCAAACTATTTAGCCACGCAAAAAGCCAGAATAAATTTCACAGATATGTGATGGTGTTGGTAAGTACAGGTGCCGATGAAACTCATACAGAGTAAACATTAAATGTAGTAATAAACGTTCAAGCTGTGTTCAAAAACTTGAAGACAGCAAAGGCCATCACAgatcctctctttctctctctacacatgcatacactactgttcaaaagtttggggttattaagattttttatttagcaaggatgtattaaattcaaattaaattggattgtttaactgtt

Function

symbol description
mnx2b Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within spinal cord motor neuron cell fate specification. Predicted to be located in nucleus. Is expressed in several structures, including endodermal cell; lateral mesoderm; motor neurons; spinal cord; and spinal cord neural tube.

NR:

description
PREDICTED: motor neuron and pancreas homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240702.1 True 1639 mRNA 0.50 3 4569834 4574420
XM_043240711.1 False 1615 mRNA 0.50 3 4569834 4574420

Neighbor

gene id symbol gene type direction distance location
ndfip2 ndfip2,LOC107676059,LOC107549434,LOC107750462,LOC107674006,LOC108411896 coding downstream 23368 4531789 ~ 4546466 (-)
LOC122353624 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 coding downstream 868589 3695165 ~ 3701245 (-)
cep97 NA coding downstream 1830245 2732846 ~ 2739589 (-)
nfkbiz LOC107751657,LOC107575617 coding downstream 1837476 2726297 ~ 2732358 (-)
eed eed,LOC107751659,LOC107662672 coding downstream 1845914 2720655 ~ 2723920 (-)
fn1b fn1b,LOC107749885,LOC107556289,LOC107674002,LOC107750053,LOC107676051,LOC107549419 coding upstream 22660 4597080 ~ 4618627 (-)
nrp2a nrp2a,nrp2,LOC107556288,LOC107749808,LOC107750056,LOC107673990,LOC107676043 coding upstream 99269 4673689 ~ 4739460 (-)
pard3ba pard3ba,LOC107673991,LOC107750057,LOC107676058,LOC107749732,LOC107549438,LOC107556285 coding upstream 190879 4765299 ~ 4896900 (-)
klf7a klf7a,LOC107725403,LOC107752450,LOC107676060,LOC107674020,LOC107556267 coding upstream 464304 5038724 ~ 5075611 (-)
mxa mxa,LOC107725377,LOC107565622,LOC107702551 coding upstream 1037488 5611908 ~ 5616115 (-)
G889 LOC107750071,LOC107750290,LOC107674016,LOC107676064 non-coding downstream 12336 4556369 ~ 4557498 (-)
G888 tuba8l2,LOC107750365,LOC107556293 non-coding downstream 16562 4551569 ~ 4553272 (-)
G885 NA non-coding downstream 58449 4510794 ~ 4511385 (-)
G883 NA non-coding downstream 63275 4506278 ~ 4506559 (-)
G880 NA non-coding downstream 69046 4500557 ~ 4500788 (-)
LOC122346147 NA non-coding upstream 44826 4619246 ~ 4623921 (-)
G899 NA non-coding upstream 45920 4620340 ~ 4620866 (-)
G959 NA non-coding upstream 173070 4747490 ~ 4748885 (-)
LOC122346181 NA non-coding upstream 286581 4861001 ~ 4862965 (-)
G973 abcb6a,abcb6,LOC107750068,LOC107556273 non-coding upstream 354944 4929364 ~ 4930701 (-)
G820 NA other downstream 270641 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 555547 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 1285048 3136508 ~ 3284786 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 1880370 2688765 ~ 2689464 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 2964850 1592069 ~ 1604984 (-)
mdh1b mdh1b other upstream 381699 4956119 ~ 4960210 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 1269724 5844144 ~ 5853249 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 1537043 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 1646184 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 1693243 6267663 ~ 6274751 (-)

Expression


Co-expression Network