ndfip2 (ndfip2,LOC107676059,LOC107549434,LOC107750462,LOC107674006,LOC108411896)


Basic Information

Item Value
gene id ndfip2
gene name ndfip2,LOC107676059,LOC107549434,LOC107750462,LOC107674006,LOC108411896
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4531789 ~ 4546466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240772.1
TCCGCCCACTCGCTTTGTTTCTCGCTGTAGGACGTGACTGTATCTGCGCGAGCGTTCGCTTTAAATCATGGCTATTGTGTAAATGGGGAAAAACTAGCGTCTCCGCGTATGACTGATCCGTGCCGTACGATCTCGGGTAAGGTCGAGGGCTGCCTCTAATTTGAATTAACCCAGGATTTTAAGGTTTTATTCGCCGCTGGCTGGGCTGGCCGTATATGAAAATGGACCAGGCGGCGAGCCGCTACCAAGTGTTGCACAATGAGGACGAATCCTCCGAAGGGGCCGCCGGCCCGGAGCCGTCCACATCCTCCCAGGCCTGTGCCGCCGTTGCAGGCATCAGCAACCCTGCGGTGGAAACGGaagctccgcctcctccttacaccAGCGTGGCGCTCGGAGCAACAGCTGCACCAGAGAGCACATTTCCGGGGGACTTTCCCGTTCCTCCACCATACAGCGTCGCCACATCTCTGCCCACTTACGATGAGGCAGAGAAGGCCAAAGCGGCAGCCATGGCCGCCTCGGCGGTGGAGGTCATTCCACGAGATGATGATTTTCCGGTTCGGGATGACTTCAGCGATGCTGATCAGCTGAGGGTGGGGAACGATGGAATCTTCATGCTGGCCTTTTTCATGGCGTTTCTGTTCAACTGGATCGGGTTTTGCTTGTCTTTCTGTTTGACCAACACCATTGCTGGCCGATACGGTGCCATCTGTGGCTTTGGCCTCTCTCTCATCAAATGGATCCTCATCGTTAGGttttcagATTACTTCACTGGATACTTCAACGGGCAGTACTGGCTCTGGTGGATTTTCCTTGTTCTCgGGctcctgctgttcttcagaggGTTCGTGAACTACCTGAAAGTGCGTAACATGTCAGAAAACATGGTGTCTTCGCTCCGAACCCGCTTCTTCCTCCTGTACTAGAGGTCGCCTCACCAAAACATTCCTTCCTAATGTGAAATTCCTTGATGATTTGCAACCCGTCAAATGAACTGGACTGGATCCCACCGAGGGGAAggggaagaagagagagagaagaaaaaaaaatcaaacgagaatctctgccaaacgttctcAGCTCAACCGGGTAGAAGCGGAAGGTTTTTCCGCGCTCTGGACGAGTGCAAATCGGCTCTTAATATCCCCGTTTTCACATCGTCCCGGTTGGCCCGAGCCCATAAACTGATTGCtagatttgaaaaaaacaacaggaaaaagtCCCTTTGCTGTTAATCTTTTCACACGCTGCATGCGGAGCGATGGACCTGTGTACTTgggtcaggaaaaaaaaaccgcAGAAGGTCTCTAGAAATATGCAGCCAAGACATCCTATGCAATGTCTTTCACCAAACCGGGTTAGCGGTCTTAGACGGATGAAACTAGACTAGTTCAATTCTCTTTGCTTCGTTGCATCCAAGGCCTTGGCAAATTTGATTGCATTGCAGTATTAATACACCAAGTTTAGATAGAATTTGATGCTAACTTTAGCTAACGGCGACGTAAAAGTACAGCCGCACAGTTTCTCTTCTTCTTAAGTTGTGTCTCGCTTAACTTTATAGTAAATGATTAAGAAACTTCATCGATGTGTTTCAAACTGGAAACGGAATTTGTACTTAtcctgaaatatatatttgccttttgcaccttcattttttttcctgttttttatGGTTATTGGTCGTTTTAAGTTGCGACTTCGCTCAAGCTGTGACCTGCCTAGATGACTTTAGTTACTTGAATGCCTGAATGCAACTGTCATTCGTTTCTATTAATCACGAGCCTCTTTAGCAATATcggatattaaaataaatgcatggttAACTCGGTTGCAGCAGTTTAAACGACTAAtccagtaaacaaaaaaaacctaagggaaaaaaaaaaggcaacttacatttattaaatgtatgtaaaacaaCCAACCAACTTTTGTTGGAATAATGATTTTGGATTTTCTCTGATTGGCAGAGATGATTGTGTGCTATGTTTATTCTCTTGTCTTGCATAATGCCAATAAAATTTGAGCTCCCAGA

Function

symbol description
ndfip2 Predicted to enable WW domain binding activity. Predicted to be involved in metal ion transport; positive regulation of protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within vacuolar transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human NDFIP2 (Nedd4 family interacting protein 2).

NR:

description
PREDICTED: NEDD4 family-interacting protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240772.1 True 2038 mRNA 0.47 8 4531789 4546466

Neighbor

gene id symbol gene type direction distance location
LOC122353624 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 coding downstream 830544 3695165 ~ 3701245 (-)
cep97 NA coding downstream 1792200 2732846 ~ 2739589 (-)
nfkbiz LOC107751657,LOC107575617 coding downstream 1799431 2726297 ~ 2732358 (-)
eed eed,LOC107751659,LOC107662672 coding downstream 1807869 2720655 ~ 2723920 (-)
hikeshi hikeshi,zgc:110091,LOC106574699 coding downstream 1811646 2717987 ~ 2720143 (-)
mnx2b mnx2b,LOC107750883,LOC107674001,LOC107556279,LOC107676047 coding upstream 23368 4569834 ~ 4574420 (-)
fn1b fn1b,LOC107749885,LOC107556289,LOC107674002,LOC107750053,LOC107676051,LOC107549419 coding upstream 50614 4597080 ~ 4618627 (-)
nrp2a nrp2a,nrp2,LOC107556288,LOC107749808,LOC107750056,LOC107673990,LOC107676043 coding upstream 127223 4673689 ~ 4739460 (-)
pard3ba pard3ba,LOC107673991,LOC107750057,LOC107676058,LOC107749732,LOC107549438,LOC107556285 coding upstream 218833 4765299 ~ 4896900 (-)
klf7a klf7a,LOC107725403,LOC107752450,LOC107676060,LOC107674020,LOC107556267 coding upstream 492258 5038724 ~ 5075611 (-)
G885 NA non-coding downstream 20404 4510794 ~ 4511385 (-)
G883 NA non-coding downstream 25230 4506278 ~ 4506559 (-)
G880 NA non-coding downstream 31001 4500557 ~ 4500788 (-)
LOC122346152 NA non-coding downstream 77609 4446059 ~ 4454180 (-)
G803 NA non-coding downstream 493819 4037738 ~ 4037970 (-)
G888 tuba8l2,LOC107750365,LOC107556293 non-coding upstream 5103 4551569 ~ 4553272 (-)
G889 LOC107750071,LOC107750290,LOC107674016,LOC107676064 non-coding upstream 9903 4556369 ~ 4557498 (-)
LOC122346147 NA non-coding upstream 72780 4619246 ~ 4623921 (-)
G899 NA non-coding upstream 73874 4620340 ~ 4620866 (-)
G959 NA non-coding upstream 201024 4747490 ~ 4748885 (-)
G820 NA other downstream 232596 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 517502 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 1247003 3136508 ~ 3284786 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 1842325 2688765 ~ 2689464 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 2926805 1592069 ~ 1604984 (-)
mdh1b mdh1b other upstream 409653 4956119 ~ 4960210 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 1297678 5844144 ~ 5853249 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 1564997 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 1674138 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 1721197 6267663 ~ 6274751 (-)

Expression


Co-expression Network