ube2f (ube2f,LOC107725407,LOC107556276,LOC107674019,LOC107707607,LOC107566887)


Basic Information

Item Value
gene id ube2f
gene name ube2f,LOC107725407,LOC107556276,LOC107674019,LOC107707607,LOC107566887
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5149028 ~ 5156356 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240779.1
CGAATGAACGGAACAGCTTCCGGTTTCTAAACCGCTCAGGCAGCGGAAATTATTAAACTCGGCGGAACTAATCTGCGCAGCGTTACGCTCAATTCTATTTCTTTTAACGACATATAACGCCTTTTATTTAGAAGTTATTTGTGGGGAAACGGTGAAATTCAATTTGAGTCTCTTGATTATGGTGTAAACGGGGCAGTTCAGGGACTCTGACAGCGGCAGgtgtgtgagagtgtgtatgttGGTCTGCTGGTATGCTGACGTTAGCTAGTAAGTTGAAGAGGGAGGAGGGTGTGAGGGCCGGCCGGACCCCTGCAGGCTCCAACGATGCCTCTCATAGAGTGTCCGTCAGAGATCGACTGCTCATCAAAGAGGTTGCAGAACTTGAGGTTAACCTTCCAAATACCTGTAAATTAACGTTTCCTGATGAAAACAAACTGTATCACTTCCAGTTGGCCATTTCACCAGATGAAGGCTATTACCTTGGTGGAAAGTTTCAGTTTGAGATTGAAGTTCCCGAAGCCTATAATATGGTGCCTCCCAGAGTCAAGTGTTTGACTCGAATATGGCATCCGAACATTGCAGAAACTGGGGAGATCTGTCTGAGttTATTGCGAGAGCATTCAATTGATGGTACTGGATGGGCACCCACTCGTACTCTAAAGGATGTAGTATGGGGACTGAATTCACTCTTcactGACCTTCTTAACTTTGATGACCCACTGAATATAGATGCAGCAGAACATCATTTACGGGACAAGGAGGATTTCAGGAACAAAGTTCAGGACTTCATCAAAAACTATGCAAGATGATGTCTCTGTCGAGCCACTCTCACATGCATGTGACTTTGCAGACGCACGTCGATCCAGACTGCAGCAGAGACAAAATCTCAAACTATTAAAACACACTCGGGCAAAGAAGAAAGTAAACTTGCGCAATGAATGACGCCATGAGTCCCCCGATCCAGATTTGGGAGGGGGGTGGGGGTTGTGGGCCTTGCTGTCCATTTCcgatggctttttttttttttttttgttgtttgttttttgaagcGGACACTCGTGCAGGTTCTTTTAAATCAAGTTTGCTTTTACCCCCTccccccacaaaaaaaaagaaaagaaaaagaagtatAAAGACGGTGATCATGAAAACGAGGACGTATAACCTCTCTGATGTCACCTCCTATGCTAGTGCCTCTGTGTTTTTGCCACATATAACTGGACATACGTTGTAAGCCAACTTCTGCAGCCTGCTTCTTCTCAAAACCTGAAAAACCTACGAACGCTGAGATTAATCTGTTCATAAGTGATGTCATAGAAATCCCAAAGCTCCATTGGTTCGTTCGCTCTGGGGGAGGAGCCCACCGACGAGGAATCGCAAAAACATAAAGCACTGATGTCCCGCAGAATACGGTTTCCGAACGGATTCTGTAAAGCCATTTCTTGTAACTCGGCACCTCCCTTCGTGTAAAATCACTGCAGTTATCAGACTACTCCGTATCACACGTGCACACGCGCAAATATCAGAGTATCTGTGCCTCTGAATGAGTTCTAAAACTGCTTCAGTTCAAATatgtgaggtgtgtgtttgcGGGTGAATCTCATGAATGTCCgggtcacatttttttatggaaGCCAGATTACTCTatggaatgaaaataaaaaatggaattGTGACCTTTTATCCAACAATTCTGACTTGATTTGCAAAACATATATcaactcagaattgtgagaaagtcTGAATTGCTTTGTCTGAATTCCAGGTTtgtatcttgtttttttttttttttttttttttttttttactttcctcCCGAATTCTGTGTTTACATCTCGCagatctgtttatttatttggtttttgctatggaatgcaaaataaaaaaggtttattgcAAGTAAGTTGATTAtcttatttagatttttattctcATAATTAAGAGATTATCTCGCAATTCtaagaaaaaagtctgaattgtgaggTTAAAAACATGAgaactcagaattgtgagattaaaaagtttcaatttcattattttaatccCGTGTCCTGCATTTGACCCCAAAAtctaaactgtaaaaacaagaAACTCTTATTTTGCATATGAGACcttatttttatgataaattaagcatttttcccccacatttaaacaatatataatttttcctGCATTGGGGCAGTGAGTATTTTGTCAAAACTATGCTTAATTATCATCAGATATGACTCAAACACGTTCAGGACGGGTTTCGTGAGATTCACTCTCGCTCTCGTATGCATTTTCGTCAGTGTATACATGTTCAGCTTTACTGATGTGTGCATGTACACAAGAATACTTGTATGCTTGTACCGTGTTTGTGTgaaagtgcgtgtgtgtgtgtgtttgagcggGAGAGACTGGGATTTTAATACATGTCTGATTTGGTAGCATGCACTGGGCTACTGAACTGCTCAGCCATAAAGCCTGTTCAATTAGTGAggatttactttatttaaattgatttcttTTCTCCTTAGAGGTGTATATCCATTTGTAAAGTATATTAAAGAAGAATTCTACCACTAA

Function

symbol description
ube2f Predicted to enable NEDD8 conjugating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in nucleus. Orthologous to human UBE2F (ubiquitin conjugating enzyme E2 F (putative)).

NR:

description
PREDICTED: NEDD8-conjugating enzyme UBE2F

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0019788 NEDD8 transferase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K10687 UBE2F; ubiquitin-conjugating enzyme E2 F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240779.1 True 2568 mRNA 0.40 10 5149028 5156356

Neighbor

gene id symbol gene type direction distance location
si:ch211-93g23.2 si:ch211-93g23.2,LOC107725372,LOC107674017,LOC107556277 coding upstream 138 5145908 ~ 5148890 (+)
fastkd2 LOC107673994 coding upstream 182108 4960324 ~ 4966920 (+)
retreg2 fam134a,LOC107706836,LOC107676053,LOC107556270,LOC107750069,LOC107673992 coding upstream 193985 4945839 ~ 4955043 (+)
cnppd1 cnppd1,LOC107706838,LOC107676054,LOC107750058,LOC107549439,LOC107556284 coding upstream 211349 4932455 ~ 4937679 (+)
abcb6a abcb6,abcb6a,LOC107676041,LOC106574324 coding upstream 217050 4922527 ~ 4931978 (+)
erbb4a erbb4a,erbb4,LOC107674013,LOC107707608,LOC107725343,LOC107667809,LOC107557316,LOC108440448,LOC101079286 coding downstream 1623 5157979 ~ 5294440 (+)
si:ch73-383l1.1 erbb4a,erbb4,LOC107705456,LOC108440448,LOC107674013,LOC107702505,LOC107707608,LOC107667809 coding downstream 283709 5440065 ~ 5562873 (+)
lancl1 lancl1,LOC107564761,LOC107702553,LOC107590692 coding downstream 437286 5593642 ~ 5600055 (+)
mylz3 mylz3,LOC107725378,LOC107564772,LOC107701775,LOC107702554,LOC107705457 coding downstream 447351 5603707 ~ 5607415 (+)
LOC122347193 pcnp,LOC107564735,LOC107590694,LOC107702552 coding downstream 451973 5608329 ~ 5610739 (+)
LOC122346173 NA non-coding upstream 10174 5127490 ~ 5138854 (+)
G1016 NA non-coding upstream 47706 5038720 ~ 5101322 (+)
G948 NA non-coding upstream 171114 4977422 ~ 4977914 (+)
LOC122346140 NA non-coding upstream 230233 4896504 ~ 4918795 (+)
LOC122346166 NA non-coding upstream 521110 4624047 ~ 4627918 (+)
G1036 NA non-coding downstream 366 5156722 ~ 5156981 (+)
LOC122344626 NA non-coding downstream 248256 5404612 ~ 5408298 (+)
G1064 mxa,mx1,LOC107702551 non-coding downstream 436858 5593214 ~ 5626276 (+)
G1061 NA non-coding downstream 458031 5614387 ~ 5622881 (+)
G1060 NA non-coding downstream 459364 5615720 ~ 5623944 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other upstream 123114 4979125 ~ 5025914 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other upstream 171765 4967186 ~ 4977263 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other upstream 204187 4938181 ~ 4944841 (+)
G826 NA other upstream 790732 4358007 ~ 4358296 (+)
G824 NA other upstream 791768 4356698 ~ 4357260 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other downstream 723104 5879460 ~ 5881134 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other downstream 901048 6057404 ~ 6087655 (+)
G1318 NA other downstream 1129502 6285858 ~ 6287198 (+)
G1414 NA other downstream 1377146 6533502 ~ 6536957 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other downstream 1555279 6711635 ~ 6845548 (+)

Expression


Co-expression Network