adamts1 (adamts1,LOC107698918,LOC107751074,LOC107593742)


Basic Information

Item Value
gene id adamts1
gene name adamts1,LOC107698918,LOC107751074,LOC107593742
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2178211 ~ 2184501 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241076.1
TGATGATCGTGGCTCTGCTCCAGCGCTCTGTTGCGTACTAGATTTGGCCGAAGCAGATCAAAGGGGCTTCAGGAAAGGGGTGGTTCTGTCTTGGAGCATATATAGAGAGCCGGGCGTCTCGCTTCTAAGACAGAAGGAGAGCTGGAACCCGAGGAGACGGTGAGAGAAACTCTCCAAGAGCGCTTTTTTGAGACTCTTCTCGCGATTTCGTTCTATTGGGCTTGTTCCCGTTCGTTTTAAGCTCTGGATTGGTACCTGTTTGACTTTTCTGGTTTCGTTTCTGTGACACGCCAGCTTGTTTTGGAGTCGCGTTCTCAAAGAACTGAAACTTCGTGAGGATTTCCATTGTTTTGTCAACCCGACGGGAATATAATGTCTCTTTTGCGCGTCATACTGGGTTTCGCTGCAGCCCTGTGCGTAAACGCGGCGCAGAGCGCGTGGGAAGAGAGCACCGTGGTGCCGGTCCATCTCGAATCGCGCGACACCGAACCGACCCGCACGGCAGAAGCACGGGAAAAGCAATCCGAGAAGCGCATCTATCGCTTGGACGTCTTTGGAAATCAGTTCGTGCTGGATCTGGAACCGGACCAGACCTTTTTAGCGCCTGGGTTCGTGTTCCAGATGGTCGGGAAACCGGAGTCCGGGGAGTCTGACAGCGCTGGAGAGGCGCGGTGCTTCTTCTCTGGAACAGTGAAAGGAGAAGAACTTTCCGCGGCGGCGATCAATCTGTGCCACGGACTGCGAGGCGGTTTCTATGTAGGCGGTGAAGAGTACTTCATTCAACCCGCCAAAGCCAGCGGAGAGGCTTCAGATGGAGACACCCACACCATTCGCAGAAGAAAACGGGGTTTCTCGGATGAGGAAAACGGCTCGAAATGTGGGGTGAACGAAGAGGAGGAACGGGTCACCGAGAAACCAACCAAATCTGACACAGAGCGCATCCCATCTGAGTCTAAAGCACACCGCAGATCTCGGCGCTTTGTGTCCACTCCTCGCTATTTGGAGATCATGATTGTGGCGGACCAGTCGATGGCGGAGTTTCACGGCGCTGGGCTCAAACCTTACCTGCTGACCATCATGTCAGTGGCGTCTCGTCTGTATCGGCACCCTACCATTCGTAATTCGATCACTCTGGCAGTTGTGAAGCTACTTGTTGTGTATGATGAAGAACACGGCCCCCAGGTGTCCTCCAATGCAGCTCTTACGCTCAGGAACTTCTGCCAGTGGCAAAGACAGCACAACCCATCAAGTGACCGGCATGCAGAGCACTATGACACAGCAGTGCTGTTCACCAGACAGGATCTTTGTGGAGCTCATTCCTGTGACACTCTGGGGATGGCAGATGTTGGCACCGTGTGTGATCCGGATCGAAGTTGCTCTATTATTGAAGATGACGGTCTGCAGGCAGCCTTCACAGTCGCACATGAGCTCGGTCACGTGTTCAACATGCCCCATGATGATGCCAAACAGTGTGCCAGTCTTAACGGTGACCAGTGGAGCACCCACATGATGGCATCAACCTTGTCAAATCTGAACCAGCTACAGCCCTGGTCCTATTGCAGTGCTATGATGGTCACAACCTTCCTGGACAACGGCCATGGTCAGTGTTTGCTGGACAAGCCTCAGAAGCCTCAGCAGCTACCCCAAGCTCTGCCAGGTTCCGTTTACGATGCCAACCGACAGTGCCGTCTCACATTTGGAGAGGAGTCCCAGCACTGTCCAGACCAGAGCACCACTTGTGCTGCCCTTTGGTGCATGGTCACGACTGCAAATGGCTTGCTGGTCTGCCAAACCAAGAATTTTCCATGGGCCGATGGAACACCTTGCGGCTCTGACAGCTACTGTATGGCAGGCCAATGTTTGAGCAGGTCCGAAGCTGCCAAGTATCAGACTCCAGTCAATGGTGGGTGGGGAGCCTGGGGACCTTGGGGAGATTGCTCCCGTACCTGTGGAGGAGGTGTGCAGTACTCTATCAGGGAGTGTGACCATCCCCTACCCAAAAATGGAGGCAAATACTGCGAGGGCAAGAGAATTCAGTATCGCTCCTGCAACACTGAGACCTGCCCTGATAGCAATGGTTTGACATTCCGTGAGGAGCAGTGTTTGGCCCACAATGACATCTCCTCTCAGGTGTCATTTGGCTCAGGGGAAGGTGTCGAGTGGGTACCAAAGTATGCTGGGGTGTCTCCCAAGGACCGCTGCAAGTTGGTGTGCCGAGCTAAGGGAACAGGCTACTTCTTCGTTTTGAAGCCAAAGGTGGCTGACGGAACACCATGCACCCCGGATTCCACCTCAGTCTGTGTCCAAGGCCAGTGTGTGAAAGCTGGTTGTGACAGAGTCATTGGCTCCAATAAGCGTTTTGACAAATGTGGCATCTGTGGAGGAGACGGATCTACTTGCAAGAAAGTTTCTGGATCGATGGAACGTGCTTGgGCTGGCTACCAAGATGTAGTGACGATTCCAGCTGGTGCCACACACCTAGATGTTAAGCAGCGCTCTCTTGGAGGTCGCCGCCAAGACAATAGCTACCTAGCAGTTCGCCGGCAAGATGGCACATATCTACTGAACGGCGACTACAAGCTGACCACTTTAGAGACCGATATCTCTCTGAAAGGTGCACTGCTTCGTTACAGCGGTTCCTCTGCCACACTAGAGCGGCTGCGAAGCTTTGCTCCCTTACCTGAGCCTCTTACTATCCAGGTGCTGTCGGTCGGTGATTCCCCCCGACCTCGAGTAAAATACAGCTACTTTGCGCCACGCCCTAGTGTGTCAAAACGCCCATCCATTAACGTTATTAGTGAAGCAGGAGATGCCGAATGGGCCCTACGTGAGTGGGGACCTTGTTCGAAGACCTGCGGTGGTGGTGTCCAGACTCGTGACGTCATCTGTCTCGATTCATTTGGCCACCAATCAAAGGACTGTCCTGAAGAGCTGCGCCCTGTGTTGTTGCAGCCCTGCGCTCCTCAGGCTTGCCCGTCTTGGTTGCTCGGGGAGTGGTCTGCTTGTTCCAAAACCTGTGGCCGAGGCTTTCGCAAGCGACCTCTGCGCTGCATCGGACACGACAGACGCACTTTGCCTAACGAGAGCTGCAACGCAAAAGATCGGCCACGACCTCTCCTGGATTTGTGCAACATGACTCCCTGTTGAAACTGAACGCTGAGGCTCGAACAGCTGTAGCCTTGCACGTCTGGTGCCAACCAACACAGGTTTTTGGATTCAAAAGGGCCCCTTATGACCAAGACTGCAAGCAAACCTCTTTCAGTCTTTTAAATCCCACGCATCCAACACTGGGGGGCACAAAGCTGGCACACTGTGCACCTGTCTTGACAGCTGTGATGGAGGATGAGAATACGGACACCTCTGCTGCTTTGGATAGTGATGTCATGCATGTTAGAATTTgagtgtgcatgagtgtgtatgATGATTAATGAAAGAGCGCATGAAACAGCTATGCATTTGTACAGTCTGTCTGAGCTGGACTAGACAGGCATGATTCGTTTGTCACAAGAGAGCATATAGGAACATATAGGAGCTATTGCCAGGGTCAGCAGCAGTAACAGAAGTGCTCATTAGCAGTGGTGTTATATAAAACGCCCTCTAGTGGTTATCCATTTCAAAGTTGCAAACTCTGGCTCGGAGCACATATTTAACACATGCATTTTTCTTGCCAAAACCAACGCCATATCTCAACTCAGCTAGGCACACATGCTGCTAATCAAACACCACACCAGGTATTATGCATTTCCTCATAGCTATGTTTAACGATGCACATTAGCTTTAAGTTTAGCTTCATAGGTTGATATTTTCACCGTTTTGCAAAGCCATACCTGATCAAGAGGGATCACTTTTTTAACGGGGAGGGAGACCAAAGAGCATAAGTTCTATACCTGAAGAGAGactgtgtttgtgagtgtttgtgtgtgtgtgggttagttctgtgtgtttgtgtggagaTATGGTGAGGGACTTCTCTCCTACTACTACTTCATAAGTAATCCTCTCCTGCCTTCTGAGAAGGTGTCTTTGTAATGAGGTATTTCTTTTTGTACAGAATATCCAaacgttatttatttttgtacagcCCATTTAATATAATCTTGTtgcttttttataattattgtatttctatgtgttattgttattattgaaataactgaaggatgtaaaatatatattagagtATTTATACAATATCAATGATCTTAGGTTTATGAATAAAGTATCACATTGATTTGTGGA

Function

symbol description
adamts1 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in oocyte stage III; ovarian follicle stage I; ovarian follicle stage II; ovarian follicle stage III; and ovarian follicle stage IV. Orthologous to human ADAMTS1 (ADAM metallopeptidase with thrombospondin type 1 motif 1).

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 1

GO: NA

KEGG:

id description
K08617 ADAMTS1; a disintegrin and metalloproteinase with thrombospondin motifs 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241076.1 True 4239 mRNA 0.50 8 2178211 2184501

Neighbor

gene id symbol gene type direction distance location
LOC122350785 adamts5,LOC107751075,LOC107593743 coding upstream 6678 2153236 ~ 2171533 (+)
gart gart coding upstream 216568 1942061 ~ 1961643 (+)
LOC122345473 LOC107751076,LOC107593744,LOC107698914,LOC100332351 coding upstream 236590 1937450 ~ 1941621 (+)
zgc:152904 zgc:152904,ncam2,LOC107698913,LOC107751079,LOC107721821 coding upstream 285015 1712042 ~ 1893196 (+)
LOC122343461 NA coding upstream 586281 1584612 ~ 1591930 (+)
appa app,appa,LOC107698920,LOC107593741,LOC107751095,LOC103352860,LOC108232458 coding downstream 8420 2192921 ~ 2219736 (+)
atp5pf atp5j,LOC107751073,LOC107593738,LOC107698902 coding downstream 36387 2220888 ~ 2223969 (+)
LOC122351075 LOC107593736,LOC107698922,LOC107748323,LOC107665816,LOC107557261 coding downstream 69118 2253619 ~ 2260025 (+)
si:ch73-41e3.7 NA coding downstream 87477 2271978 ~ 2274222 (+)
trmt10c NA coding downstream 91945 2276446 ~ 2281686 (+)
G415 NA non-coding upstream 2595 2174322 ~ 2175616 (+)
G408 NA non-coding upstream 58820 2119116 ~ 2119391 (+)
G404 NA non-coding upstream 96391 2081472 ~ 2081820 (+)
G318 NA non-coding upstream 186444 1930657 ~ 1991767 (+)
G450 NA non-coding downstream 90506 2275007 ~ 2275341 (+)
G439 NA non-coding downstream 91491 2275992 ~ 2276271 (+)
G457 NA non-coding downstream 138784 2323285 ~ 2327330 (+)
G440 NA non-coding downstream 188214 2372715 ~ 2373156 (+)
G463 NA non-coding downstream 235975 2420476 ~ 2421647 (+)
LOC122327253 NA other upstream 736545 1439040 ~ 1441666 (+)
G136 kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674 other upstream 1057490 1119719 ~ 1120721 (+)
LOC122341994 NA other upstream 1728571 445940 ~ 449640 (+)
G10 NA other upstream 2000011 177716 ~ 178200 (+)
cyyr1 cyyr1,LOC107751099,LOC107698919,LOC107593871 other downstream 1320 2185821 ~ 2192464 (+)
grtp1a grtp1,grtp1a,LOC107571994 other downstream 299139 2483640 ~ 2489103 (+)
setdb2 LOC107570068 other downstream 309071 2493572 ~ 2558527 (+)
pcid2 pcid2 other downstream 327071 2511572 ~ 2518385 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other downstream 340024 2524525 ~ 2527244 (+)

Expression


Co-expression Network