trim2b (trim2b,trim2,LOC107665973,LOC107564373,LOC107758867,LOC107714129)


Basic Information

Item Value
gene id trim2b
gene name trim2b,trim2,LOC107665973,LOC107564373,LOC107758867,LOC107714129
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6815110 ~ 6828152 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241177.1
AGTTGCTTATGTCGCTGTAGTGCAGAGAGGTGGGGGAGCGAACAGAAGCGAAAAGAGACTGTGCAAAACAGCCCCCCACCCCTCCTCTACGGGAAATGGGTCTCAGGCTGATGAGTAAGGCAAGAAGCTCCTGTAGCGCTGGTGCATCTGAAGCTACGCAGCTATGGAGGAAAGGGCCCAGTGTCAAATAAGGGGAGACAGTAATTGGCCCCTGCAGCCTGTGGTCTGTTTGTGTCTCCAGTGGATCAAATACACCTTCTTCCCTTAATATCTCTGCATTATATAAGAATACACCAATTTATATGCACAACACCTGAGCTTCATCTTTCTAAGGCTTCactatggaagcccgtttccacCACAGagtaaaaaatatgaaagGGTTGTGTTTTCTGCATCCTTGTATCGTGAGAGCAGTTACATCTTCCAACCGCATGGAGGCGCAGCAGGCTTCTCCTGACAGCAGCAGTGAGGAATGTACTGTACTAGAGGCTCTGCCTGGCAAGGGAACAGCGATAATTTGCTCTCAACACAAAGGAAAAGTGTCTGTGTTGTACTGTTTGGCCTGCGAGAATGCAGTATGTGAGGACTGTATGAATGGAGAACATGCTGAGCACCCCACTGATTCACTGGAAAATATTGTGGACCAGCAGCTAGCGGCGTTACAGGACAGAGTGGATTCAGCCAAGAACAGGCTTCCTCAGATAAGAGAGGCAGTTCAGAGTTTGAGAGACATTCTGCAGCAGTTGAACTCTCAGCGGAGCTCCATAGAAGAAGACATCCACTCCTCCTTCAGCGAGCTGCACAAAACCCTCGATACACGCAAGAGCGTCCTGCTCATGGAGCTGGAAGTCACGTATGGACTGAAGCAGAAGGTTTTGCAGGCTCAGTTGGACACTCTTCTGCAGGAGGAAGCTGCCATCAACTATAACTGCAGTCTGACTGGTGAAGCCCTGGACGGGGAAAACAAGGCTGTCATTCTGCAGACCCATAAAGACGTAGGAGAAAGACTCAGTGACCTGGCCAGCCAGGGCCTTCCTCTTCAGCCTGAGGAGAACGACCAGCTGGATCTCATGATGGAGATTGAAGGACTTCGCAAATCCATCCACAACCTGGGAACAATCGTCACCACCAACGCGGTGGCCAGTCAGACCGAGGCGTCGGGGGAGGGTCTGGAACAGTGCATCGTGGGCCAGCCGGCAACTGTCATCATAACCACGAGAGACAAATCTGGAGGACTGTGCAAGACGGGTAACGCCATCATCTCAGCTGAAGTCTGCACGCCGGATGGCAGCGTCGCAGATGGAGAAATTGTGGACCATAAAAATGGAACGTATGAATTCCAATACACGGTGAAGAAAGAGGGCAATTTTAGTCTAGCGCTTAGACTTTACGATCAGCATATTAAAGGAAGCCCCTTCCAGTTAAAGGTCACCAGCTCTCCGGATGATTCTCCACCCACCACCACCGCAGCCAACGCTGCTTCCACCGGTTCCAGCGATGGCGGGGCGCGGAAACGAAGCGCTAAGTCCCCGGGGAGCCGAAGCCGGCAGAAGGGCGTCAGACGGGGAGGAAGCTTGTTCAGCACCCCAAAAAAGAGAGTGAACCCGATCGAGGACGACCTCATTTTTAGAATAGGAACGAAAGGGAGGAATAAAGGAGAGTTCACTAACCTCCAAGGAGTAGCAGCTTGTTCAGAAGGAAAAATCTTAATTGCAGACAGTAACAATCAGTGCGTGCAGATATTTTCAAATACGGGAGAGTTTCAGAGCCGTTTCGGGGTGCGTGGCCGTTCGCCGGGACAGCTGCAGCGGCCCACTGGAGTAGCTGTGCATCCAAACGGGGACATCATCATTGCTGACTATGACAATAAGTGGGTTAGCATCTTCTCCAGTGAGGGTAAATACAAGGCTAAGCTGGGCTCGGGAAGGCTGATGGGCCCAAAAGGTGTATCTGTGGATCAGAACGGTCATGTTATCGTTGTGGATAACAAGGCCTGTACAGTTTTCATCTTCCAGCCCAGCGGGAAACTCGTCACTAAGTTTGGCAGCAGAGGAAACGGTGACAGGCAGTTTGCGGGTCCACACTTTGCAGcagtcaacaacaacaacgaaatAATCATCACAGACTTTCATAACCACTCTGTTAAGGTATTTAATGCAGATGGGGAGTTCTTGCTGAAGTTCGGCTCTAACGGTGAAGGGAACGGGCAGTTCAACGCTCCCACAGGGGTTGCTGTGGATGTCAATGGGAACATTATTGTGGCAGACTGGGGAAACAGTCGGATACAGgtGTTTGACTGAAGCGGATCGTTCCTGTCCTACATCAACACGGCAGCAGACCCTCTCTACGGTCCGCAGGGTCTTGCTCTGACCTCTGACGGCCATGTTGTGGTGGCTGATTCCgggaaccactgctttaaaGTGTACCGCTACCTGCAATGACTTCAGAGAGACTCTGATCTAAGACGGAAAGAGAATCAGTCATACTGTATGTGTCCAAATCTTGCacttaatgtaatgtaatggtaTTCTTCCTCCTTGGTTTTCAcatcttttttgtatttgttactATTGTCGGATGACCTTCTAAGAAGACTACAGCTTGTAAACACTTGTTTATGGGATGCCTTGGAATGCCTTTGCCAAACCTCCACGCTCTACACTGTGGAAATACTGAGACGTCAGAATGCATTGGTGAGTGAACTGCTACCTGAGCTCAAACTCTGCTCCTATGTGCTGCATGTGTGGACCATGCATGCGCTGCCAACTTCTGGACACATCCGAGCCCCATCTGACTTCTAGGATGCTATTAGAACACTATCTCAACACTTTCTCATGAACCTTTTGATAAGGATATGGTGTAGAGATACTCGTATCTCATGCAGCCAAGAGAGCAGGCAGCGATATCTCTTGTCTTCAAGCTTTAGCATTCCCTCCTCAACCTGTTCTTATCTTACAGTTTACTTATAAACTATgtcaaatgtttgaaataactatgattttttttatgtaataaagtTATGTAATAaagctcatcaaggctgcatttatttgatcaaaaaaacagtaaaaactgtaaggttgtgaaatattattacagtttaaaataacttttctatttaaatatattaaaatgtaatttattcctgtgatggtaaaACTATTACTCTATTACTTTAATCTTTATTGTCACATGAttctacagaaatcattctgatttgctgctcaagaaacatgtcTTAACATTAACAAGGTTAAACAACTGTGCTGCTTAaacattttgtggaaaccaaGATACACTGCTAACAAAGTGATCGAAAAGTTAAGCggtttttctatttcaaataaattctattcATTCACTAATCAAGAAATCCTAAAATAAGTATATCATAAGTCTCCACAAACATACAATAATTCTACAACAGCAAAAATTGTTTTCGACATTGatgataatttattattaataataataactgagcaccaaataagcatattggaatgatttcagAAGCTGATTTCAAGGTGAAAGAATGATTTCTTGATGTAACACTGAAGattgaagtaatgatgctgaaaattcagcgttgccatcacaggaatcaATGAAATTGTACATTATATTCAAATGGAAAcagttaaattgtaataatatttaacaatattgctgttttcactgtattttttaatcaaatatatgcaACATTGCTGAGCATAAGACACTTAACAACacttattaacaaaaaaaatgcaaatgaatcaaaaaatgTGACTGGTAGTATTGGCATGATTATAGTTTCACGAACTATGATCATATTCCACCTGTGTCTGTTTAATTCACTATTTTCAGTGCAACTGCAATAAGCAAAATTACAGTGTGCTATTGAAACATCACCAACAACATCTGAATCATTTGTCGTGTGTACGTGTGTAAGAGACTAACAGTAGATTACACAATGCACTGTTGCCTTGCATACTTCTAGAATGAGACTAGCAGCATATGGctctttatttagaaaatattaggACTCTCTATTTTCCTTACAAATGCTATTAAAAACTggaaatatctatatatttgtgtatttatcgTAAATAATGTTTCGAAGGAAAGATGTTTGGGTTTCAAATGCAAACATAGTTAAAAGccaaacattttcaaagaacTGATTTTTGATTTGTCAAACTTTCTCTCATGTATCCCAGGATTCTTAGAGGCATGATTCACATACTGTAGTAGTAATGATGTCATACAAATTTCATCATAACTGAATGGCAATAGTATTTCATCTCATTACGATGCAAAGgtcattttgtgttcttgcttttatattcaaattccagaatgtgttcattttgttttggtaCAGATACTCTGTACCGTAAGTTGTTTGCATATGCACAATGATTTGCataatgtgctgatttgatttattttctgtatataagGATTGTATGTAAAGAATGTTTTGTACGTTcatcagaaaataattttacttgaatgttaatgttttacgtctgtacaaaaaaattaGCCTTAACATTTACATCTTGCAACATTTATTGATGAAAATGGTTTCAGTggaatactttattttatttagtttatttagttgaTGTGTGCCTGTTTACAACTTATGACAATAATCCTGCTtggactgtgttttttttaattaatatcgCTATCACGTCATTATCATGCTAACGTACAGCTCATTAAAAAGTGACTTTGGAAAA

Function

symbol description
trim2b Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2R. Orthologous to human TRIM2 (tripartite motif containing 2).
trim2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process; protein polyubiquitination; and regulation of neuron apoptotic process. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Located in cytoplasm. Implicated in Charcot-Marie-Tooth disease type 2R.

NR:

description
PREDICTED: tripartite motif-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241177.1 True 4739 mRNA 0.42 13 6815110 6828152

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-75b4.10 NA coding upstream 1466 6812053 ~ 6813644 (+)
si:dkeyp-75b4.8 LOC107692693,LOC107565146 coding upstream 8776 6803199 ~ 6806334 (+)
pdia2 LOC107692722,LOC107714133,LOC107663318,LOC107565477,LOC107722973,LOC107590747 coding upstream 12351 6798322 ~ 6802759 (+)
LOC122342636 LOC107692694,LOC107565156,LOC107590746,LOC107722971,LOC107714127,LOC107663320 coding upstream 18722 6795394 ~ 6796388 (+)
pmm2 pmm2,LOC107692644,LOC107590721,LOC107722953 coding upstream 49195 6761979 ~ 6765915 (+)
fgb fgb,LOC107692638,LOC107714148,LOC107564337,LOC107665922 coding downstream 7519 6835671 ~ 6839289 (+)
LOC122351770 lratb,LOC107714151,LOC107692632,LOC107564312,LOC107758870,LOC107665938,LOC107590728 coding downstream 34329 6862481 ~ 6864648 (+)
LOC122351754 LOC107714136,LOC107564298,LOC107692720,LOC107665943,LOC107590774,LOC107758848 coding downstream 40613 6868765 ~ 6873779 (+)
LOC122351785 LOC107714151,LOC107758870,LOC107665938,LOC107590728,LOC107564312,LOC107692632 coding downstream 91112 6919264 ~ 6921212 (+)
npy2rl npy2rl,LOC107714138,LOC107692719,LOC107590775,LOC107665946,LOC107758849,LOC108439369 coding downstream 139374 6967526 ~ 6975479 (+)
G1405 ugt5b1,LOC107692647,LOC107714140,LOC107564400 non-coding upstream 223855 6583976 ~ 6591255 (+)
G1415 LOC107747400,LOC107719078 non-coding upstream 273579 6539629 ~ 6541531 (+)
G1367 NA non-coding upstream 357752 6456067 ~ 6457358 (+)
G1358 NA non-coding upstream 371634 6437808 ~ 6443476 (+)
LOC122351800 lratb,LOC107714130,LOC107590749,LOC107665934,LOC107758869,LOC108258974 non-coding downstream 82224 6910376 ~ 6911075 (+)
LOC122351810 NA non-coding downstream 82929 6911081 ~ 6912265 (+)
LOC122351804 lratb,LOC107665934,LOC107590749,LOC107758869,LOC107714130 non-coding downstream 84127 6912279 ~ 6916697 (+)
G1565 LOC107590778 non-coding downstream 236973 7065125 ~ 7068197 (+)
G1577 LOC107723159,LOC107723172,LOC107565422,LOC107758837,LOC107590752,LOC107758876 non-coding downstream 307644 7135796 ~ 7143741 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other upstream 32969 6771486 ~ 6782141 (+)
G1414 NA other upstream 278153 6533502 ~ 6536957 (+)
G1318 NA other upstream 527912 6285858 ~ 6287198 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other upstream 727455 6057404 ~ 6087655 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other upstream 933976 5879460 ~ 5881134 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other downstream 18348 6846500 ~ 6860270 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other downstream 318721 7146873 ~ 7152220 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other downstream 892113 7720265 ~ 7721425 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other downstream 1126559 7954711 ~ 7985615 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 1778673 8606825 ~ 8607785 (+)

Expression


Co-expression Network