LOC122346519 (mad1l1,LOC107564387,LOC107722950,LOC107590744,LOC107714125)


Basic Information

Item Value
gene id LOC122346519
gene name mad1l1,LOC107564387,LOC107722950,LOC107590744,LOC107714125
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6714745 ~ 6761771 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241215.1
TTCACAAAGTGGCGCTGTTGTGTTGATGAGCCAAACCAGCGTGTGTTGCCGCACATATACGAAGAAGCGAGAGCTCAACCAACGACAACAAAACTGCTGCAAGTTCAAACCGCTGGAGACACGAGCggtaagagagagaaagggctGAGAAGAAGGAGGCTGTCAAAGTATTGTCAAAATGGATGATTTGGAGGATGACACCACAATCTTCTCAACGCTAAAATCTTTCAAGAGTTTGATATCATGTCCAGATCGCTCTTTACTAGAGACTGAGCCAGCCTTTGGAAGAAGTGGCCTTCAGAATCTATATACTAAAAGAGTGGAGTTGGAGGAGGCTGCAGAGCGTGTCCGTTCTCACACCAGCCTGCTGCAGCTCACTCAAGAGAAACAACAGATGGAGCTCAGTCATAAACGAGCACGTATAGAGCTGGAGAAAGAGGCAAACAGCAGCTCCAGAGACTTACAGAGGGAAATTGACCGTAACAGGGAGTTACTGTTGAAGATCAGACGCCtggaagaaagagaagagaaagcaAATCAAGCTCTTAATGAACAAATGGAAAACAGCAAGGCTTTAAAGCGTAACTTCGAGGAACTTCACaagaaagcaaatgaaaaagacaGCAAACTTGCAGAGGCAGACCAGATGATCAGTGAGCTGAAAGATGACACGCGAAGGCTCAATCAACAGATTCAAATTCAGGAGTCCAGATTCTCCACCCAAAACCTGGAGATCCAAGCCCTGCAGGAACAACTGGATGTGCAGCGCAAGAAATTCCAGGATGTCAGTCAGAGGTACCAAAATCTGCAGTCATCTCATTCCACCAGCACAGAGAGCGAACTCAAGATGAAGGAGTTGGAGAGGCGTTTAGCTCTTCAGGAGCAAGACTCTGTGATTGTGAAAAACATGAAGTCTGAAGTGGCCAGACTGCCTGAACTGGAACGGGAAATTAAACGTCTGCGGGAGGAAAATACTTTCTTAAGAGAGACAAAAGAGAACAACAGTCTGCTGAAAGAAGAGACTGAGGGTTTGAGGAGAAAGTTGGAGAGAATGGAGAGAGTGATGGAGGAGAAACTGAAAGTAGAGTTGGAGAAAGAGAAACTGGAGCGTGGGCTGCAGGCTTGGGAAAACATTGGCCAGTCTACAGGACTTAATATTAGgAAACCTGAGGATTTGTCCAGGGAGGTCATACAGATTCAACAGCGAGAGCTGAACCTGAAACAGCAGAACTACACACTCAATAGcagCATTCGCTCAGTGGAGAAGGCCCGCACTGAGCTCATGCCCGAGATCGCTCAACTGCGAGCCAAAGCTCAAGAAGAACAGAAGAAACGAGAAAACCAGGATTCACTTGTTCGTCGCCTACAGAAGAGAGTCCTACTGCTCactaagGAGCGTGATGGAATGAGGGCCATATTAGAGTCGTACGACAGCGAGCTGGCCACAAGTGAATACTCCCCTCAGCTCATGCTCCGGGTCAAGGAGGCAGAGGACATGCTGCAGAAAGTCCAGACACATAATACAGAGATGGAGACTCAACTGTCTAAAGCCCAGGAGGAGGCAGGCACCTTCAAATTACAAGCTCACATGATGACTGCTGAACTTGAGACACTGAAAGAGCAGCAGGTGTCTAATACTGAgaaaaacaccttagcaacagcGGAGGAAGTCAGCTCTCTCAGgCAGAAGATCGAGGAATTGGAGGCAGAACGTCAGCAGCTGGAAGAGCAAAACAATATTCTGGAGATGAGACTAGAGAGGCATAACCTCCAGGGAGACTATGATCCTGTGAAGACAAAGGTGATCCACCTGCAAATGAACCCCACCAGCATCGCAAAGCAGCAGCGCACTGAAGAGGTGGAACAGCTGAGGGTGGAGTGTCAACGCTTGAGGGAGCGACTCCGGAAAATTGAGGCGGGTGGTGGCATGGTAACAGACGACACCACTCTCATCATCCCACCTTCACAGGAAATACTGGATTTGCGCAAGCAGATGGAAAGTGCAGAACTAAAGAACCAGCGCTTGAAGGAAGTGTTCAAGAAGAAGATTCAAGAGTTCCGTACTGCGTGTTACGTACTCACCGGGTACCAGATCGACATCACCGTGGAGAATCAGTACCGGCTCACTTCTGTGTACGCCGAGCATGAAGAGGATTCGTTACTGTTCAAGtcaACTGGTCCAGTGGGCAGCGGCAGCATGCAGCTGTTAGAGACAGATTTTTCCCGCACTCTAACAGGACTGGTAGATCTGCATCTCTTCCATCAGAAGAGCATCCCAGTGTTCCTCAGCGCGGTCACCATCGAGCTGTTCAGCCGCCAGACTGTCACCTGATTTACCAGTCACTGCTCGACCACACAGTGTTCAGGgacctctctctcacacactcgcaTACATACACAGCAAGACACTGACATCTACAGAATGTGGCCTTGACAAGCTGATTATTTTtaagtagcatttttttttgtggttaacATTTAATAGTCAAAGTATGACAATCTATATGGCAGCATTTGAGTAGTATAGTGATTACTTTTCTTTTAccttaaaaatgctataaaccCATACTGTGCTTAAGAAACAGCTTAACACACACGCAGAAGAACCCTTAAGATGTGCAGTCATCATTTTACATAAGATCTTTCGTGGCAGTTTATTTGCCtgtattgaagaaaaaaaaataaag
>XM_043241223.1
TTCACAAAGTGGCGCTGTTGTGTTGATGAGCCAAACCAGCGTGTGTTGCCGCACATATACGAAGAAGCGAGAGCTCAACCAACGACAACAAAACTGCTGCAAGTTCAAACCGCTGGAGACACGAGCggtaagagagagaaagggctGAGAAGAAGGAGGCTGTCAAAGTATTGTCAAAATGGATGATTTGGAGGATGACACCACAATCTTCTCAACGCTAAAATCTTTCAAGAGTTTGATATCATGTCCAGATCGCTCTTTACTAGAGACTGAGCCAGCCTTTGGAAGAAGTGGCCTTCAGAATCTATATACTAAAAGAGTGGAGTTGGAGGAGGCTGCAGAGCGTGTCCGTTCTCACACCAGCCTGCTGCAGCTCACTCAAGAGAAACAACAGATGGAGCTCAGTCATAAACGAGCACGTATAGAGCTGGAGAAAGAGGCAAACAGCAGCTCCAGAGACTTACAGAGGGAAATTGACCGTAACAGGGAGTTACTGTTGAAGATCAGACGCCtggaagaaagagaagagaaagcaAATCAAGCTCTTAATGAACAAATGGAAAACAGCAAGGCTTTAAAGCGTAACTTCGAGGAACTTCACaagaaagcaaatgaaaaagacaGCAAACTTGCAGAGGCAGACCAGATGATCAGTGAGCTGAAAGATGACACGCGAAGGCTCAATCAACAGATTCAAATTCAGGAGTCCAGATTCTCCACCCAAAACCTGGAGATCCAAGCCCTGCAGGAACAACTGGATGTGCAGCGCAAGAAATTCCAGGATGTCAGTCAGAGGTACCAAAATCTGCAGTCATCTCATTCCACCAGCACAGAGAGCGAACTCAAGATGAAGGAGTTGGAGAGGCGTTTAGCTCTTCAGGAGCAAGACTCTGTGATTGTGAAAAACATGAAGTCTGAAGTGGCCAGACTGCCTGAACTGGAACGGGAAATTAAACGTCTGCGGGAGGAAAATACTTTCTTAAGAGAGACAAAAGAGAACAACAGTCTGCTGAAAGAAGAGACTGAGGGTTTGAGGAGAAAGTTGGAGAGAATGGAGAGAGTGATGGAGGAGAAACTGAAAGTAGAGTTGGAGAAAGAGAAACTGGAGCGTGGGCTGCAGGCTTGGGAAAACATTGGCCAGTCTACAGGACTTAATATTAGgAAACCTGAGGATTTGTCCAGGGAGGTCATACAGATTCAACAGCGAGAGCTGAACCTGAAACAGCAGAACTACACACTCAATAGcagCATTCGCTCAGTGGAGAAGGCCCGCACTGAGCTCATGCCCGAGATCGCTCAACTGCGAGCCAAAGCTCAAGAAGAACAGAAGAAACGAGAAAACCAGGATTCACTTGTTCGTCGCCTACAGAAGAGAGTCCTACTGCTCactaagGAGCGTGATGGAATGAGGGCCATATTAGAGTCGTACGACAGCGAGCTGGCCACAAGTGAATACTCCCCTCAGCTCATGCTCCGGGTCAAGGAGGCAGAGGACATGCTGCAGAAAGTCCAGACACATAATACAGAGATGGAGACTCAACTGTCTAAAGCCCAGGAGGAGGCAGGCACCTTCAAATTACAAGCTCACATGATGACTGCTGAACTTGAGACACTGAAAGAGCAGCAGGTGTCTAATACTGAgaaaaacaccttagcaacagcGGAGGAAGTCAGCTCTCTCAGgCAGAAGATCGAGGAATTGGAGGCAGAACGTCAGCAGCTGGAAGAGCAAAACAATATTCTGGAGATGAGACTAGAGAGGCATAACCTCCAGGGAGACTATGATCCTGTGAAGACAAAGGTGATCCACCTGCAAATGAACCCCACCAGCATCGCAAAGCAGCAGCGCACTGAAGAGGTGGAACAGCTGAGGGTGGAGTGTCAACGCTTGAGGGAGCGACTCCGGAAAATTGAGGCGGGTGGTGGCATGGTAACAGACGACACCACTCTCATCATCCCACCTTCACAGGAAATACTGGATTTGCGCAAGCAGATGGAAAGTGCAGAACTAAAGAACCAGCGCTTGAAGGAAGTGTTCAAGAAGAAGATTCAAGAGTTCCGTACTGCGTGTTACGTACTCACCGGGTACCAGATCGACATCACCGTGGAGAATCAGTACCGGCTCACTTCTGTGTACGCCGAGCATGAAGAGGATTCGTTACTGTTCAAGATGGTgggcgaagtcttgtttgttgcACTGTAACTCTCATTCCCATAT

Function

symbol description
mad1l1 Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore and mitotic spindle assembly checkpoint signaling. Predicted to be located in nucleus. Predicted to be active in kinetochore; mitotic spindle; and nuclear envelope. Human ortholog(s) of this gene implicated in lymphoma and prostate cancer. Orthologous to human MAD1L1 (mitotic arrest deficient 1 like 1).

NR:

description
PREDICTED: mitotic spindle assembly checkpoint protein MAD1-like

GO:

id name namespace
GO:0007094 mitotic spindle assembly checkpoint biological_process

KEGG:

id description
K06679 MAD1; mitotic spindle assembly checkpoint protein MAD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241215.1 True 2687 mRNA 0.47 18 6714745 6761771
XM_043241223.1 False 2218 mRNA 0.48 18 6720461 6761771

Neighbor

gene id symbol gene type direction distance location
LOC122346986 ugt5b1,LOC107692647,LOC107714140,LOC107564400 coding downstream 120956 6589057 ~ 6593789 (-)
LOC122346971 ugt5b3,ugt5b4,LOC107564400,LOC107692647,LOC107714140 coding downstream 121029 6580204 ~ 6593716 (-)
LOC122347228 NA coding downstream 167277 6545961 ~ 6547468 (-)
micall2b LOC107564427,LOC107702520,LOC107590718,LOC107722924,LOC107692650,LOC107725362 coding downstream 262103 6439035 ~ 6452642 (-)
ubn1 LOC107692651,LOC107702522,LOC107725361,LOC107722945,LOC107590714 coding downstream 364244 6339847 ~ 6350501 (-)
c1h7orf26 LOC107714132,LOC107722952,LOC107663321,LOC107692723,LOC107565504 coding upstream 4291 6766062 ~ 6770577 (-)
pgap6 tmem8a,LOC107714144,LOC107692641,LOC107564383,LOC107722960,LOC107590745,LOC107663323 coding upstream 20762 6782533 ~ 6791869 (-)
rnf175 rnf175,LOC107714147,LOC107692639,LOC107564352,LOC107665971 coding upstream 66749 6828520 ~ 6834082 (-)
LOC122351719 fga,LOC107692636,LOC107714149,LOC107565125,LOC107714150,LOC107758872 coding upstream 78157 6839928 ~ 6845456 (-)
LOC122351948 LOC107758836,LOC107692686,LOC107723162,LOC107665933,LOC107565093,LOC107590751,LOC557811 coding upstream 246827 7008598 ~ 7019036 (-)
LOC122347249 NA non-coding downstream 224552 6487644 ~ 6490193 (-)
G1398 NA non-coding downstream 301164 6413382 ~ 6413581 (-)
G1394 NA non-coding downstream 325108 6389420 ~ 6389637 (-)
G1288 NA non-coding downstream 496156 6218244 ~ 6218589 (-)
G1282 NA non-coding downstream 500198 6213641 ~ 6214547 (-)
G1499 fgb,LOC107665922,LOC107692638,LOC107714148,LOC107564337 non-coding upstream 20642 6782413 ~ 6839409 (-)
G1519 NA non-coding upstream 40523 6802294 ~ 6802755 (-)
G1528 NA non-coding upstream 92303 6854074 ~ 6854374 (-)
G1529 NA non-coding upstream 94024 6855795 ~ 6856108 (-)
G1531 NA non-coding upstream 96024 6857795 ~ 6858061 (-)
LOC122342514 NA other downstream 170187 6533501 ~ 6544558 (-)
gaa2 si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 other downstream 246491 6456044 ~ 6468254 (-)
gng13a NA other downstream 386404 6327023 ~ 6328341 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other downstream 439994 6267663 ~ 6274751 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other downstream 488631 6220604 ~ 6226114 (-)
trpc5a trpc5a,LOC107564287,LOC107692628,LOC107758875,LOC107590730,LOC108439362 other upstream 309818 7071589 ~ 7134282 (-)
G1642 NA other upstream 363871 7125642 ~ 7170022 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other upstream 442233 7204004 ~ 7295829 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other upstream 1730373 8492144 ~ 8500212 (-)
G1926 NA other upstream 1794269 8556040 ~ 8607795 (-)

Expression


Co-expression Network