ccr9b (ccr9b,LOC107598203,LOC107749654,LOC107675310,LOC107726711,LOC107703604)


Basic Information

Item Value
gene id ccr9b
gene name ccr9b,LOC107598203,LOC107749654,LOC107675310,LOC107726711,LOC107703604
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 404682 ~ 408086 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241388.1
TCAATGTGGGAAGCTTATTCATCACTGAACTGTTGTTAAACTTTTGGTTATCTGTTGTGACTCTCCTGAACATGGGTGTATTTACAACTTCAGGCTatgacATTGGTACTTTTAATTTCACAGATTTGTCAGACTTGactaCTGATACTGATGACTATGAATCAGACTTGGGTGGATTATGTAACAAAGAGTTGGTGCGACAGTTCAGTAAGACCTTTGAGCCCACTCTCTACTGGATTATCTTTGTCGTGGGGGCTTTGGGTAACCTACTGGTTGTCTGTATCTTCACAACTGTGCGAAACCGCCTCAAGACCATGACTGATGTGTACCTTCTGAACCTGGCAGTGGCTGATCTTCTTTTCCTAGGCACATTGCCCTTCTGGGCAACAAATGCTGCTCAGGGCTGGGTGTTCAGCCAGGCCATTTGCAAAGGAATTTCTGCAGTCTACAAGATCAACTTCTTCTCTAGCATGCTCTTACTCACCTGCATTAGTGTAGACCGCTACATTGCCATCGTTCATGTAACTGAAGCTCacaactacaaaaacaaacgAATGCTATATAGTAAGATaacgtgtgtttttgtgtggcTCGCATCTTGCCTCTTAGCTCTACCAGAATTTCTCTTTGCCAATGTGAAAAACATTGACCCACATGGCACTTCCTGTGTTATGGTATATTCAATCACAGACAACAATCGTACCAAAGTCTTGGTATTGGCTTTACAGATCAGTGTTGGCTTCATACTCCCATTACTTGTCATTGTATTGTGTTACTCAGTCATTATTCGTAAACTCATGCAGGCTCGAAGCTTTGAAAAACACAAGGCTTTAAGAGTCATCTTTGCAGTTGTGGCTGCTTTTGTTCTCTCACAGTTGCCATTCAGTGGATATCTAATTATACAAGCAGGCCAAGCCAACAACGCTACAATAACAAACTGTGAAGTCATGCAAAGCTTAGACATGGCTGGGCAAATTGTGAAGTGTCTTGCATACACACATTGCTGTCTGAATCCCATCctgtatgtatttattggtGTTCGCTTTCGGAAGGATCTCTTCAGCCTGCTTCAGCGCATGTCCTGTGGCATGGGACTGGTCAACAATAGCAAACTGCAACAAGTTCCCAAGAGGCCCTCTATTATGTCTGACACTGACACCACCcctgttttttctttatagaCACCAGTATACAGTTTTGACATCCTTTTAATCCTTTTTGTCATGGTTATAGGCCATGTTTGGGCAAAGCCTTTGAAATGTGCTTTATGATAGTATTATTCTTGCATAGTTCTCTGTCTGTAAATGATGGCAGATAGTGGAGGCATAGACtttgtacattttgcattttgcattttgtacaTTCTGTTCTTGAGCATTTAACCACAATTTTGGCATGGATGATTGCAGTTAGagcaatgttacaaaaaatgttgtaaagtgtaaatagatgttaaaaatgtagaacttattaaatgtaataaattttattttgatttaattttgtattataaataaagtgattttttttcataaaatctaa

Function

symbol description
ccr9b Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in early endosome and membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in thymus. Orthologous to human CCR9 (C-C motif chemokine receptor 9).

NR:

description
PREDICTED: C-C chemokine receptor type 9-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0042119 neutrophil activation biological_process
GO:0006935 chemotaxis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016494 C-X-C chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241388.1 True 1542 mRNA 0.39 3 404682 408086

Neighbor

gene id symbol gene type direction distance location
gli3 LOC107749627,LOC107747788,LOC107554716,LOC107598194,LOC107694915,LOC107694564 coding downstream 43079 210723 ~ 361603 (-)
prpf4bb prpf4bb,LOC107738454,LOC107749644,LOC107598186,LOC107670278,LOC107554722,LOC108442973 coding downstream 199123 193211 ~ 205559 (-)
lztfl1 lztfl1,LOC107701792,LOC107675311 coding upstream 14814 422900 ~ 433678 (-)
trnag-gcc NA coding upstream 30968 439054 ~ 439128 (-)
LOC122353666 NA coding upstream 219614 627700 ~ 627818 (-)
LOC122342059 ncam2,LOC107748174,LOC107756756,LOC107673712,LOC108426076,LOC107721821 coding upstream 358140 766226 ~ 826226 (-)
farp1 farp1,LOC107730395,LOC107677850,LOC107653673,LOC107560794,LOC107744955,LOC107559785 coding upstream 642660 1050746 ~ 1116435 (-)
G56 NA non-coding downstream 10830 393299 ~ 393852 (-)
G51 NA non-coding downstream 183354 218929 ~ 221328 (-)
G50 NA non-coding downstream 183608 218579 ~ 221074 (-)
G19 NA non-coding downstream 226481 177676 ~ 178201 (-)
G18 NA non-coding downstream 238355 166097 ~ 166327 (-)
G66 NA non-coding upstream 14046 422132 ~ 422409 (-)
G70 NA non-coding upstream 33793 441879 ~ 442209 (-)
G72 NA non-coding upstream 39422 447508 ~ 447882 (-)
G73 NA non-coding upstream 40242 448328 ~ 448640 (-)
G99 NA non-coding upstream 315659 723745 ~ 724036 (-)
G20 NA other downstream 217597 186420 ~ 187085 (-)
G67 NA other upstream 27722 435808 ~ 436125 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other upstream 330051 738137 ~ 748364 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other upstream 668102 1076188 ~ 1231647 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 1183983 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 2280679 2688765 ~ 2689464 (-)

Expression


Co-expression Network