lrrc58a (lrrc58a,LOC107566535,LOC107746289,LOC107676832,LOC107746054,LOC107692112,LOC107572937)


Basic Information

Item Value
gene id lrrc58a
gene name lrrc58a,LOC107566535,LOC107746289,LOC107676832,LOC107746054,LOC107692112,LOC107572937
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 23054530 ~ 23058156 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241633.1
ATGACCAACCACTGACTGCAGGAGGCgtgacacacacagataaaaccACCAAAGTCTGGTCTGGAGCGCACTTCTCACAGCTGCGGTCACTTTAGTGCCAGGGGATCAAATATGCATGGATTATAACTCAAGAATTCCGAGGCGATAACTTTTAAGATTACTGCGCCTTTAAAAACAGCGATACTTTGCTTTACCGTattgctgttttaatatttcgCTCCACTAATTAGCCCATATGGCTCGTTTTCCAAGCATGGACGACAAGTgctctgttttatatttatcgCGTCTGCACCTGGACGACTTGAGCTTGGATCATCTCACGGACAGCAAACGACGACAAATCCAGCAGCTGCACCTCGCTTACAATCGTTTGTCGTGTCTTCCACCTTCCGTCTGTTTTCTGTCCAACCTGGAACATCTGGATATCAGCAACAACGCGCTCGCGGTCATACCACAAGACGTTATGCGCCTAACGAACCTCACGACTTTTGTAGCAAAGAACAATCTTCTGAACGAGTCCTCGTTCCCTAAAGAGTTCGAACGCATGCGGGTCGAGACTCTGAATCTGAGTGGGAACAGGTTTGAGGACATTCCCGTGCAGTTTATCAAAATGACCACACTACAGTCCCTGTCACTTGGAGGAAACAGATTGAAGAATATCCCTGCAGAAATAGAGAACCTGACCAGGTTAGAGATGCTGTATTTAGGAGGAAACCTCATCTCCTCCATCCCACCTGAGGTGGCTAACCTCACCAGTCTGAGATACCTGGTTCTGTGTGACAATCGCATCCAAAGCATACCGCCCCAACTCAACAAGTTACactcccttctctctctcagtctccaCAACAACCTGCTGACCTTCCTCCCTCGTGAGATCCTGAGCCTCGTCCATTTGCAGGAACTCAGTCTGCGCGGAAACCCTCTCGTCGTGCGCTTCATCAAGGACATGACCTATGACCCCCCATCTCTGATGGAGCTGTCAGGACGCACCATCAAGTCCCAGAACCTCCCTTTCAGCTCTTGTGACCTACCGTCCAATCTGATCCATTATTTAAACCTGGCTAGCGAATGTCCCAACCCAAAGTGTGCAGGTGTTTACTTTGACTCATGTGTGAGGCACATCAAGTTTGTGGATTTCTGCGGGAAGTACCGCCTGCCGCTCATGCATTACCTCTGTTCGCCGCAGTGTTCCTCTCCCTGCAGCTCAAACCCGCAGAGCGACGCAGAGTCAGAGGAGGAGAACAGCATCCCTGCAGACAGGCTCCAGCGGGTACTGCTGGGATAGGAAACCTCTAACAGAGACAGTTCCCTGCCACAGGATTTCCATTTTAATGCTTCATTGCATGTTTTCGTAGgcctataaaatattaaaaacacttagACCCAAAAGAGTTGGGTCTTAAAACTATTTTAGTAACTATTTGGGTTTTAATACAGGTTTAAACTGTAAATCgaacttaaaagaaaaattcacacacacacacacacacacacacacaaagaaagaataTTCTGTATTTTCTCACTCTTGTGTCACGGGTAAGGAGACTTTAAAAGACTTTTGATACTGTATGTTGTCACATGGATTACTTATATAACTGTTTTGTGGTTTTTGGCTTGAAATTTCGCGAAAGTGAGTAAATAACACAAACTGAACTGACTACTAATGTTGCTCATAAGACATCTGAAAACAGTTTGCGTTTTGCCTAAGACGGTATTCTGAGTAGGTTAGCTCGACGCAGACCAATCCTGCATGCAACCAGAAAGCAAACTGACCGCTTTGCACTTCTGGAAAATGTGATCAATACGTGAACAGTTACTCTTTGACCTCTTCTTTGTATTGACTGTCATTCTGCTCTAACTTTTCTGTCCAAAGGTCAGGTTATGGACTATTGTGGCTACGTAAcacagttttgaaaatgtatagaaGGTTATTGTTCATGATACAACCTTGAAAGTAGTTACATGCAAagggctttttaaaaaaaacaaaacgttatTTTCAGGTGGTGGCTACACCGAACAGATCAGTATTAAATGGTTACCATCTCTAAAAGAGCTCATAATGAccttaatagtaataaaaaagatataCCCCTCGATGATAACTTA

Function

symbol description
lrrc58a Orthologous to human LRRC58 (leucine rich repeat containing 58).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 58-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241633.1 True 2118 mRNA 0.44 4 23054530 23058156

Neighbor

gene id symbol gene type direction distance location
fstl1a LOC107566530,LOC107746304,LOC107676844,LOC107746068,LOC107692113 coding upstream 595 23044523 ~ 23053935 (+)
gja8b cx44.1,LOC107566539,LOC107746070,LOC107746288,LOC107603011,LOC107692191 coding upstream 15508 23037844 ~ 23039022 (+)
bcl9 bcl9,LOC107746285,LOC107676875,LOC107566537,LOC107746055,LOC107692115,LOC107603052 coding upstream 33698 22935869 ~ 23020832 (+)
morc3b LOC107603048,LOC107692193,LOC107746056 coding upstream 128908 22916545 ~ 22925622 (+)
cbr1 cbr1,LOC107746284,LOC107560976,LOC107692178,LOC108428204 coding upstream 138124 22913640 ~ 22916406 (+)
trnae-cuc_5 NA coding downstream 876 23059032 ~ 23059103 (+)
stn1 obfc1,LOC107566536,LOC107746306,LOC107572935,LOC107683323,LOC107746305,LOC107746065 coding downstream 1476 23059632 ~ 23063350 (+)
sh3pxd2aa sh3pxd2a,sh3pxd2aa,LOC107692111,LOC107746291,LOC107746053 coding downstream 5996 23064152 ~ 23147300 (+)
cfap58 cfap58,LOC107746299,LOC107583211,LOC107659560 coding downstream 147233 23205389 ~ 23276768 (+)
sorcs3 LOC107746061,LOC107566138,LOC107684317,LOC108443686,LOC103372478 coding downstream 626639 23684795 ~ 23732246 (+)
LOC122351271 NA non-coding upstream 10396 23042249 ~ 23044134 (+)
G5289 NA non-coding upstream 188740 22864834 ~ 22865790 (+)
G5264 NA non-coding upstream 245500 22807650 ~ 22809030 (+)
LOC122331092 NA non-coding upstream 296876 22752486 ~ 22757654 (+)
LOC122346574 NA non-coding upstream 312899 22735434 ~ 22741631 (+)
G5522 neurl1,LOC107746293,LOC107746052,LOC107692176,LOC107676877 non-coding downstream 91036 23149192 ~ 23153598 (+)
LOC122350314 NA non-coding downstream 95578 23153734 ~ 23154301 (+)
LOC122350307 NA non-coding downstream 122847 23181003 ~ 23182431 (+)
G5548 NA non-coding downstream 413114 23471270 ~ 23471530 (+)
G5553 NA non-coding downstream 430960 23489116 ~ 23491559 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other upstream 203137 22840688 ~ 22851393 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 1419478 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 1433938 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 1693090 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 2811181 20241818 ~ 20243349 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 484908 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 1225326 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 1498641 24556797 ~ 24558929 (+)
G5817 NA other downstream 1645692 24703848 ~ 24704319 (+)
LOC122329747 ndufaf5,LOC107594415,LOC107583196,LOC107684300,LOC107675590,LOC107756989 other downstream 1925890 24984046 ~ 25398340 (+)

Expression


Co-expression Network