ptcd1 (LOC107692668,LOC107725401,LOC107722939,LOC107590737,LOC107565220,LOC107575409)


Basic Information

Item Value
gene id ptcd1
gene name LOC107692668,LOC107725401,LOC107722939,LOC107590737,LOC107565220,LOC107575409
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6054892 ~ 6059265 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241820.1
GCAACATGGCGACTTCCAGTAGAAGCATCATGTGAGGATTTCTAGTAGCTGTTTCTACCGCAGTTTGTTCTGAAAGGGTGATATGAATGGACTAATTGGGTATTAATATAAGATTGGTGGCCAAAATGTTGCGTTATGCACTTTTGAGGGGTATTTTCACGCGGAACTCCGGtgttaatgttgtaaaatgcGCTGCCGCGTCCTCAAATGCGCTCAGATCAGCTGTCTGTCCTTCCGAGCTGCATCAAGGACCCTTCAGATACATTACATTAACACCTTCGAGATGGGCTGACGGCAACAATACCAAGCCAAATGCGTCGGAGCACGTGCACGAGGAAGATACAAGCGTTGCGTTTGGTGATTATTCCAGAAAGTTCTCCTCCAGGCGAACCTTCCGCAAAACATCCCCAGAGCAGCAGCTGGATCTGAAATACAGAGATGAGGATGAAGCTGATGCGCAGCTGGTGGAAACGTTCAAGTCCAAAACGGGTCGGAAAAATACACCGTACTGGTATTTCCTTAAGTGCAAACGGCTCATCAAAGAGGATAAAcTGGCTGAGGCATTGGTTCTCTTTGAGACTGATATGCTCAAAGGTGAAAGGTTACAACCTGAGGAGTTCAATTACACTGTGCTCATCGGCGGATGTGGACGCGTCGGCTATCTAAAGAAAGCCTTCCAGCTCTACAATAATATGAAGAAGCGAGGAATCGAGCCATCTGACGCTACATACACCGCGCTGTTCAATGCTTGTGCAGAGTCACCGTGGAAACAGGCAGGGCTGGAACAGGCATTGAATCTCAAGCAAGAGCTTCTCAGGAAAAACATTCCTCTCAGAGCCATTACCCAGCACGCCTTGCTCAAGACAGTTGCTATTGCTGGAGATCTGAAGTCATGCTTTCAAATTCTGCGGGAGATGCTTCAAAATGGACAACCCATCACACAAGAGACATTTCACTATCTGCTCATGAGCTGTGTGAAGGACAAGCAGCATGGATTCAGACTGGCTTTACAGGTGTGGCACCAAATGATTAGGATTGGAATAAAGCCAGACGCTCAGAATTACAACATACTTCTGCGGGTGGCAAGGGATTGTGGGATAGGTGATACTGGTTTGGCTTTTGCATTACTACTGAAGAGAACAGATGAAGTGACCCCAAAACTCACAAGTGGAAGGAAAAGCCGTAGGACAAAAGTCAAGGAGGAGATGTTGTGTCAGCACTTAGATATGGATGCGTTTGAGAGTGAGCTCTTTGCAGACACCCACATACAGGAGAACGAACAAGTCAAAGAGACTGATTTCTGCCTTCCAAATGCAAAAGAACAGTGCAAAATAGACACGTCTCCAAATGAGACTCAAATGGTGTCTGTATCACAAAGTGGCTCTCTGACATGTCAATCACAAAGCTCCCGTCTCCCAAACCTTCTGGACCCCAGCACTTGCCACTCAGGTGTAGTTGCCTTGGGACCTGTGAAGAGTGCTGCTGATAGACTTGCTCTGATTGGGAATCTTGAAGGTTTTTTGGAGAAAATGGTCAAAGACGGACTGGAGCCCAACATCAAAACCGTCACACTATTGGCTGATGTCATGGAACCCGACAGCCAATCAGTGCAGAGTTTGATTAATGTTGCCAAAAATAGCGGTGTCACACTGGACGAGATGTTCTTTAACATTATAATCAGAAGGGTGGCCAAAGCTGGAGACTTGGACGGGGCTAAggctGTAAAAGCCCTTATGGTTAACAGAGGGCTGGTTGCAAATGCACAGACATTCTGTGGTATTGCTCTGGCTTGCAGAAGACAAAAAGATGCAGTGCAACTGCTTACGGAGATGGAGtcttgtGGACTTGTGCCGAACGCTCATGTTTACAGTGCCCTGATCAGCCAGGCAGTTAAGCGACTGGACTATGCTTATCTGCAAGAACTTCTTCAGCACATGCACAAACTCCAAGTGCCGCCCAACGATGTCATCATCAGACAGCTGGAGTTCGCAGCTCAGTATCCTCCTTCCTATGACAAGttaaaATCACGAAACACGTACATGGACAAGATTGACGGCTTCCGTGGGTTTTACAGACAATGGCTGAAGTTTATGCCTGGCCAGGAAACACCACACCCCTGGGAAAAATACCGATCCCCAAAACCAGAAACAGAACAAGATGGACTCACTTCACAAAAtcaaatttctaaataaatttgattgctgtttttttacta

Function

NR:

description
pentatricopeptide repeat-containing protein 1, mitochondrial-like

GO: NA

KEGG:

id description
K17710 PTCD1; pentatricopeptide repeat domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241820.1 True 2215 mRNA 0.46 8 6054892 6059265

Neighbor

gene id symbol gene type direction distance location
zgc:112980 LOC107564628,LOC107692670,LOC107702537,LOC107722968,LOC107725351,LOC107590736 coding downstream 7083 6039555 ~ 6047809 (-)
syngr3b syngr3b,LOC107692735,LOC107590758,LOC107722933,LOC107702512,LOC107565597,LOC107725368,LOC108441471 coding downstream 75189 5974469 ~ 5979703 (-)
grapb grapb,LOC107701786,LOC107564666,LOC108258884,LOC107722955,LOC107702513,LOC107590757,LOC108441477 coding downstream 184135 5861026 ~ 5870757 (-)
si:dkeyp-9d4.3 si:dkeyp-9d4.3,LOC107701782,LOC107725391,LOC107722956,LOC107590702,LOC107564683,LOC108441467 coding downstream 221199 5792616 ~ 5833693 (-)
LOC122347093 NA coding downstream 265271 5784721 ~ 5789621 (-)
LOC122347124 NA coding upstream 12665 6071930 ~ 6073942 (-)
LOC122347076 NA coding upstream 15146 6074411 ~ 6078273 (-)
fbxl18 fbxl18 coding upstream 19151 6078416 ~ 6083178 (-)
actb1 actb1,actb2,actbb,LOC103039558,LOC102799139,LOC103383494 coding upstream 24934 6084199 ~ 6087762 (-)
abcg2b abcg2b,LOC107692667,LOC107725367,LOC107564610 coding upstream 40711 6099976 ~ 6106980 (-)
G1248 LOC107725398,LOC107692671,LOC107722970,LOC107722977,LOC107590704,LOC107564637,LOC107702540 non-coding downstream 20893 6031896 ~ 6033999 (-)
G1246 NA non-coding downstream 33961 6020556 ~ 6020931 (-)
G1240 NA non-coding downstream 80830 5970390 ~ 5974062 (-)
G1151 NA non-coding downstream 264973 5789667 ~ 5789919 (-)
G1146 NA non-coding downstream 276738 5777098 ~ 5778154 (-)
G1254 NA non-coding upstream 3091 6062356 ~ 6063185 (-)
G1257 NA non-coding upstream 7046 6066311 ~ 6067614 (-)
G1263 NA non-coding upstream 29758 6089023 ~ 6089403 (-)
G1282 NA non-coding upstream 154376 6213641 ~ 6214547 (-)
G1288 NA non-coding upstream 158979 6218244 ~ 6218589 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other downstream 201643 5844144 ~ 5853249 (-)
mdh1b mdh1b other downstream 1094682 4956119 ~ 4960210 (-)
G820 NA other downstream 1755699 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 2040605 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 2770106 3136508 ~ 3284786 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 52198 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 161339 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 208398 6267663 ~ 6274751 (-)
gng13a NA other upstream 267758 6327023 ~ 6328341 (-)
gaa2 si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 other upstream 396779 6456044 ~ 6468254 (-)

Expression


Co-expression Network