abcg2b (abcg2b,LOC107692667,LOC107725367,LOC107564610)


Basic Information

Item Value
gene id abcg2b
gene name abcg2b,LOC107692667,LOC107725367,LOC107564610
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6099976 ~ 6106980 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241882.1
TCAATCATGTGACAGAAGGCATGGAGAAAcgtgcttatttaaaaaaatatagtagtCTCAGTTAAATTAAACCTTTCAATGAGCTACATTGCATTTCACTAAAACTTTAAGCATGTAGATAGTAAAAATGTTGCTAGAAGaccattaacattaaaattagtGTAATTTCTTTCCTATAACGTGTAAACATGTGACGTTTTTAAACTATGTTATAAGTTGTTTCATAAGTGCAGGAGTTACATAGCAGCCAGTGTTACGTAGAACCGGGGCAGCCAAGGACTTTGACAGGAGACGCACCGTGATCCCTGTATGGAGTATAAGTCGCTCCATGGATGTGAATGCACTAAAAATGTTGCCCGTCGGGAAAGCGACGGCACAAAAGTGTGGGTAAAAGTGCCAGGCCCAACTCTGACATACCAGAATATTCAGTACTGCATTAGAGAAAGCCGTGGACTGTGCCGCAAGAGAGGACCTGAGCGAGAAATCCTGAAAAACGCCAGTGGAGTCATGAAAACTGGCCTGAATGCAATCATGGGAGCAACGGGAAGCGGAAAAACATCGCTGTTAGATGTGATCGCTGGAAGGAAGGATCCGCGTGGTTTGCGCTCAGGTCAAGTTCTGGTTGACAACAAGgtcgtgacctctgacctccgtCTCATGTCTGCGTATGTCGTACAGgATGATATCCTGATGGGCACGCTGACTGTGAGGGAGAATCTTTTATTCTCTGGAAATCTGCGGTTGCCAAGGAAACAGTATTCCACTGCtgataaggaaaaaaaagtggagAGCATCATCCAGGAGCTGGGATTAGAGGACTGCGCAGACACCAAGATTGGCACAGAGTTTCTAAGAGGTGTGtcaggaggagaaagaaagcgCTGTAGCATTGGTATGGAGCTCGTTACGTCTCCTACACTTCTGTTCCTGGATGAGCCGACCACAGGCCTCGACTCCAATACAGCTAACAGCATCATTGCTCTGTTGCACAGCTTGTCACGGGGTGGTAGAACTATAATTTTCTCTATCCACCAGCCACGTTACTCAATCTTCAGGCTCTTTGATCACCTGACACTTCTCCATAAAGGAGAAACTGTTTATGCTGGTCCTGCCGGCAAAGCCATGGACTACTTCCAGAATCTGGGTTATACGTGTGAGGCTTTTAACAATCCCGCAGATTTCTTTCTGGACATAACAAATGGGGAGGCCCATTCTGCAGTGTCAACAGAGAAGTCACTGGCTGAGTTTTACAGGGAGTCTCACTACTGCGCTGCTGTCAAAGACGAGCTGAAGTGTATCACTGGACCATCAGATCCCTCACCTGAGACCAAGAGCAAGGCAGCATATGCCACTTCATTTTTCTACCAGtTAAAGGTGGTATGCTGGAGGACAATGCTGAATGTTGTCAGGAATCCTCAGACCTCGTATGCTCAGATGGCAATGAACATTCTCTGTGCTCTGCTGATTGGACTCATCTACTACCAGATGCCTTTAACTCTTCCTGAAGCCTTGCAGAACAGgattGGAGCATTCTTCTTTCTCATCATCAACATGGTGTTTGGCAACCTTTCAGCAGTTGACCTCTTCATTAATGAAAGAGCGATCTTTGTgCATGAGAACTCTGGGGGATATTATCGTACATCTGTGTATTTCCTATCCAAGGTGTTTGTGGACCTGTTACCAAATCGCATTGTGCCGATTTTCATCTTCTCCAGCATTTGTTACTACATGATGGGGTTGAATCCGGCATTCACGTCCTTCCTGTGCTTTGCTTTGACCATGTCCATGGTCAGTCTGGCAGGAGTCAGCTTGGCCTTCCTGGTCAGTGCCAGCGTGAACACTTTCGCCATTGCCAACGTTCTCATTGCCATGCCTTTCGTCTTCATGATGGTGTTCGGAGGATTCCTGGTGAACCTTAACTCCATGCTCAGCTGGCTGTCCTGGCTCAAGTGGGCCAGTATCTTTAGATACGGACTAGATGCTGTGactataaatgaaatgaaagggCTGGTCTTCTACAATGGCAATGCGACACTAACAGGAGAGATGTATCTGCAGTCTCAGGGGATCGATTACAGTGTATGGGGCTTCTGGCAGAACCAGGTGGCTCTTCTGGGCATCATACTGTTGTGCATGACGTTTGCATACATACAGCTGCGCAGGATCAACCGCTGGAATTAACGCACATGTTCTCCATAACAGATTCACTCATGCACactatttaatttcataaaatgtttattttattttattgggttTGACaagtttttgaaatatgaaatactttttatatatagtttaaaaaggCCATGTTGTGCAACATATCTGTATTCAAAATTCATTATCAGCTATTCAAATGCTTTTCTGCcaaatttgttaaaattattaaaaggtaAAGTGACTAAATGTTTCGGATGTGTTCGCTGTTTGTGTAATTGGACTATTAACTTTATAGTTACTGAGATATAACCTTTATGGCATtgtaaatatagatatattacaTGAAATTTAAGTTCTCAATTCTTTGTGCACATGGTAGGCATGTGCTTCAACCATTTTGGCCCAGTTACACAGACAAGGTTTAGCCTAACccttcaattaggacatttaagcatttttttttataaatatgcctcaatgcatgtttctttcagctgaaggagctcagatttacattttagactaGGCTTAAGACTTGTGTGTGAAAGTAGGGAATAATGTAacaaattttgttttgtttgttttgtttatttctatttatcacattaataaaatgcaaatgcgtAGCCTAACAGTGTGCTTAAGTGAATGCGTGTTAAAATGTTATCCTCACATAGAACATGAGTAACGCAACCACTAGGCGGCAGCAGCGTTCTGAGCAGGACCTTCCTCAATGTCTTCCGCTGCCCTCgtattaaatacacacacaactgCAATTTTGTAAGTAGTTTGTATCTATTAACTGAAATTTGACATTCTGTCTTTTagttatacatacatacagctCACACAGACCATCATAAACTATGCAAggcatttgtttacattttaatacagcgaaaaataaaatataatctgtCTATATCTATAAATCAGTCTGAAGTGGAATATCTCCATCATGTTGCTGTGGTCTCTAAAACTCACAGAAAGCAGCTGCAGACATTTCTTTGTGATTGCCATATAGAATATATTCACATCTGTTAGGTATTAGTAAATCCttttgtgtgctgtgtgtgtgtgtgtgtgagagagagagagagagagactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtgccGTTTTCTTGAGTTTCATTCAGAGGCACAGTGTCAGCGCAAAAAATCTTGGAAAACCTCCAAGGTCGAGGTGGAGAGAATTCAGAGGAAAATATTTAAGAACAGAG

Function

symbol description
abcg2b Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in intestine.

NR:

description
PREDICTED: ATP-binding cassette sub-family G member 2

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241882.1 True 3410 mRNA 0.42 16 6099976 6106980

Neighbor

gene id symbol gene type direction distance location
actb1 actb1,actb2,actbb,LOC103039558,LOC102799139,LOC103383494 coding downstream 12214 6084199 ~ 6087762 (-)
fbxl18 fbxl18 coding downstream 16798 6078416 ~ 6083178 (-)
LOC122347076 NA coding downstream 21703 6074411 ~ 6078273 (-)
LOC122347124 NA coding downstream 26034 6071930 ~ 6073942 (-)
ptcd1 LOC107692668,LOC107725401,LOC107722939,LOC107590737,LOC107565220,LOC107575409 coding downstream 40711 6054892 ~ 6059265 (-)
grin2ab grin2ab,LOC107564541,LOC107692695,LOC107722958,LOC108439083,LOC107725390,LOC108258284 coding upstream 31643 6138623 ~ 6205146 (-)
ndufab1a ndufab1,LOC107725395,LOC107590767,LOC107702508,LOC107722929 coding upstream 170077 6277057 ~ 6280616 (-)
palb2 palb2 coding upstream 174193 6281173 ~ 6288577 (-)
ern2 ern2,LOC107702527,LOC107722925,LOC107590742 coding upstream 192936 6299916 ~ 6312773 (-)
LOC122342505 LOC107565181 coding upstream 222681 6329661 ~ 6330527 (-)
G1263 NA non-coding downstream 10573 6089023 ~ 6089403 (-)
G1257 NA non-coding downstream 32362 6066311 ~ 6067614 (-)
G1254 NA non-coding downstream 36791 6062356 ~ 6063185 (-)
G1248 LOC107725398,LOC107692671,LOC107722970,LOC107722977,LOC107590704,LOC107564637,LOC107702540 non-coding downstream 65977 6031896 ~ 6033999 (-)
G1246 NA non-coding downstream 79045 6020556 ~ 6020931 (-)
G1282 NA non-coding upstream 106661 6213641 ~ 6214547 (-)
G1288 NA non-coding upstream 111264 6218244 ~ 6218589 (-)
G1394 NA non-coding upstream 282440 6389420 ~ 6389637 (-)
G1398 NA non-coding upstream 306402 6413382 ~ 6413581 (-)
LOC122347249 NA non-coding upstream 380664 6487644 ~ 6490193 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other downstream 246727 5844144 ~ 5853249 (-)
mdh1b mdh1b other downstream 1139766 4956119 ~ 4960210 (-)
G820 NA other downstream 1800783 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 2085689 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 2815190 3136508 ~ 3284786 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 4483 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 113624 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 160683 6267663 ~ 6274751 (-)
gng13a NA other upstream 220043 6327023 ~ 6328341 (-)
gaa2 si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 other upstream 349064 6456044 ~ 6468254 (-)

Expression


Co-expression Network