fscn1b (fscn1,fscn1b,LOC107692665,LOC107564588,LOC107722932,LOC107590764,LOC107702511)


Basic Information

Item Value
gene id fscn1b
gene name fscn1,fscn1b,LOC107692665,LOC107564588,LOC107722932,LOC107590764,LOC107702511
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6094349 ~ 6099830 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241988.1
atcTAACAGATTACAGTTACACTTATTTTGTAAATCATTAACGTAATTCTGTTGCATGTTGCATGTTACTCCAAAATGCTCTTCAGTTAGcctatacataatataaatgcagGCTGCAAGTTGCTTGTATGTAATATAAATCAACACTGCAACAGATGCAACAGATTTCCATTCTAACGCACATGATATACTACATCGTTCACATTTTAATAACTCAAACGTGTACTTCTCTTCACGAGGGAAGGCGCTTTAATTTAGGATGTGGCGATATCTTCCCATAGCAACAGCAGCGGGATGACGTGGGAAGGTAGCGGATTAAACTCTTTGTATTTGAATGGCGCAGAAATCAAGTGTCGCAAATAGCCGTCAAGATCAATGATGCTTCTGCGCGTGAAATAAAACAGCAGGGCGCCTAAAAAGTTTACATGCAACCTACATATCAGCATcacgcacacgcacgcgcacgcacgcacacacacacacgcgctctctctctgtctctctctccattcTCTCTCACGCCATCACACTCGTCACACCCGCTCCTCGGAACCGCTGCTCACCGATTCCCGCCGAACCGTAACAACCGAACAGCTCCAGCATGTCTTCTGAAGGATTAGGCGAGACTCTGGTGATTCGGTTCGGGCTGATAAACGCCGACAACAAATACCTGACAGCGGAGACGTTCGGTTTTAAAATCAACGCCTCGGCGAGCTCCATGAAGAAAAAGCAGGTGTGGACGCTGGAGCAGTCCGGTGACCACGGAGACTCCAACGCCGTGTTCATTAAAAGCCACCTGGGTCGTTACCTCGCTACGGACAAGGACGGCAACGTGACGGCGGACGGCGAGCAGCCCGGCCCGGACTGTCGGTTCCTCGTGATCGCCCACGACGACGGCCGGTGGTCCCTGCAGTCCGAGCCCCACTCGCGCTACCTGGGCGGGACCGAGGACCGGATCGCGTGCTTCGCGCAAAGCATCTCGCCCGCGGAGAAATGGAACGTGCACCTGGCCGTCCATCCTCAGGTGAACGTGTACAGCATCTCGCGCAAGCGGTACGCGCACCTGTCCGAGAGGAACGAGCTCGCCGTGGACCGCGACGTGCCGTGGGGCGTGGACTCGCTGCTCACGCTCGTCTACCTGGATCACCGGTATCACTTGCAGACCGCCGACAACCGCTTCCTCACGTGCAGCGGTGCCCTGACGGCCAAACCGGGCACGGGCACCGGGTTCACGCTGGAGTTCCGCGCGGGGAAGGTGGCTTTCCGGGACGCGACGGGCAAATACATCGCGCCCACGGGCCCCACCGGGACCATGAAGTCTGGCAAGAGCGCGCGCGTCGGCAAAGACGAGCTATTTGTCCTCGAGCAAAGTCACGGGCAAGTGGTGCTTACCGCCAGCAACGAGAGAAACATCTCCATGCGCCAGGGGGTTGATTTATCAGCCAATCAGGATGAGGAGTCCGACCAGGAGGTGTTTCAGATGGAGATGGACAGGGAGACAAAACGCTGTGCCTTCCGCTCTTGCAATGGGAAGTATTGGAGTCTCACCCCGAGTGGAGCGATCCAGTGCTCAGCCTCCACTAAATCCCCCAGTTGTTTCTTTGATCTCGAGTGGAAAGGGTCGAAAGTCGCTCTGAAGGCCAGTAATGGTAAATACCTGGCTGCCAAAAAGAACGGACAGCTGGCGGCGGCCGTGGACTCTGCAGGTGAGCAGGAGGAGTTTGTGTTGAAGCTCATCAACAGGCCGTTGATAGTGCTGCGTGGGGAACATGGATTTATCGGTTGCCGCAAACAAGGAACTGGAACACTGGATTCCAACCGCTCGTCCTATGACGTCTTCCAGTTAGAGTACAACAGCAACGCTTACAGCCTCAGAGACTCAGCGGGGAAGTATTGGACGGTGGAGGCAGACGGCTCTGTGATCAGCAGTAGTGACGCACCTGTCTATTTCCACTTTGAGTTCTGTGATTACAATAAAGTGGCCATTAAGACAAAGGAGGGCAAGTATCTGAAGGGAGACCATGCCGGGGTGCTTAAAGCCAGGGGCCAGGGCATTGCTGATGCAACATTGTGGGAATACTGAGAAACTTTCAGctatctacacacacaaacaaacatgtgtGTTCTCTAAATCTATACGTAAACATAACACATTCTCTGCAGAATAAGCACATGATAACATGCAATCCATATGAACACAACATACAAAGATATCTCAGCATAATCTAATGGATCAAGgcacaaaacacatttgaatgTATAAGTATGCACAAATGATCACAATGCACAAATTAGCTTAACTCGTTAAATTAGTTAATAGATAGTTcaggcaaaaatataaattgtgacattatttactcatcctcagaTTACTGAcacctgtatgactttatatattttgaagaaaacacCCCGAAAGGCACTGAACCTTTTTGATTTTcattgcataaacaaaaatgcaaccAAAGTAAACAAGAGCgaaaaattgtttgtttatcagctatcttcaaaatatcttcttttgtgttcagcagaagataCAGTTCGGAACAACACAAGGGagactaaatgatgacagaattttcattttgggtgaactgtccctttaagacaagCACAAACTGATGGtgtactgataaaaaaaaatactgtttaaactGGAACTGAATCATGATGAAATTTGCTCAAACTAAAGATAGCAGTAACACTTTACGAtaagatttaatttaacttataaGATGAACTATAACTCTTCTACAGtatagttaatgttaatttcaacatttactatacatttttaaaatcacaatttgtacgcattagcattagttaatgcactgtgaactaacaaaTGAACAgtaagtgcattttttaataactaacagtaacactgataaataaatgctaaataaacatttaacattaataaatgtgagcttatgtaaagtgttaccaaacgaTTAATGGAGTGAAATTCTGTCACGAAACCTTGCAAAAATACATTGAGCAGTTTAATGCACATCATGTAGGCCGATTCAAGTCACTGTCTCTGCCTTTCGATCCTTTCATGGCCTTATTTTGCTCATCATAATATCCGTTTCTGGGAAATTTTGAATCGAAATGTGCTATTACATAATGGTCAATAATTTGCTTATGCAAAATGGGCATGCAACGGTGTCTCATAAGCTGAGCCTTCGGCCATAGGGTTTGTTCCTGTTcgcaaaatcatttttagagcGAACTGGCTTCTGTAATGAGGCCAGGTTTTAAATAGCTGCACCGtgtcacacaaaaaaactgGAGAAATACGCTTGTTCACATCAGAGAGACATTTCGATATCCctgcacacaaatacacagacacacagaatcAGTCAGAagcatttcatttgtttgtcaAACTGTTACTTGTGGTGTTTGTGTCCATTTTGGGTTACATGACTCGTATTCAGCATTACAGTGTTTATGCTATCTCTGGCTATCATTGATAACGTGTTGATTTGCACTTTTTCGGCTAAAGCTTTTCATGTGAATGtgctgaaagaaaaagacaaagcgTTCGTGCCTTCCTCGGTGGGATAAGATCTCCCACTAAGGtgtgaaaatgcagtttttttgaacttcatttttattttgttctcatTATGTGCCATTGCAACTGGACATGACAAtgaaataaacagaacatttcagaaagtaaa

Function

symbol description
fscn1b Predicted to enable actin filament binding activity and protein-macromolecule adaptor activity. Predicted to act upstream of or within actin filament organization and cell migration. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in brain and telencephalon. Orthologous to human FSCN1 (fascin actin-bundling protein 1).
fscn1 Enables actin filament binding activity and drug binding activity. Involved in several processes, including microspike assembly; positive regulation of cellular component organization; and regulation of plasma membrane bounded cell projection assembly. Located in several cellular components, including actin cytoskeleton; microspike; and ruffle. Biomarker of cholangiocarcinoma; common bile duct neoplasm; pancreatic cancer; and pancreatic ductal carcinoma.

NR:

description
PREDICTED: fascin

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241988.1 True 3701 mRNA 0.45 5 6094349 6099830

Neighbor

gene id symbol gene type direction distance location
slc29a4b si:ch211-160d14.6,slc29a4,LOC107692733,LOC107590706,LOC107565581,LOC107575408,LOC107722931,LOC107702536,LOC108439098 coding upstream 23713 6062142 ~ 6070636 (+)
smcr8b LOC107725400,LOC107564620,LOC107692669,LOC107702539,LOC107722967 coding upstream 54505 6035257 ~ 6039844 (+)
mief2 mief2,LOC107725398,LOC107564637,LOC107692671,LOC107722970,LOC107590704,LOC107702540 coding upstream 60551 6028082 ~ 6033798 (+)
alkbh5 alkbh5,LOC107725396,LOC107692672,LOC107702542,LOC107722963,LOC107590703 coding upstream 67227 6021733 ~ 6027122 (+)
myo15ab LOC107725350,LOC107692700,LOC107565240,LOC108441473 coding upstream 74394 5984438 ~ 6019955 (+)
zgc:77849 zgc:77849,LOC107722949,LOC103038624,LOC107692663,LOC107564565,LOC108439082,LOC107702534,LOC107590708 coding downstream 8031 6107861 ~ 6113525 (+)
tlr2 tlr2,LOC107590711,LOC107722930 coding downstream 126568 6226398 ~ 6231182 (+)
prkcba prkcb,LOC107722959,LOC107702530 coding downstream 133206 6233036 ~ 6260748 (+)
cacng3a cacng3,LOC107590766 coding downstream 162592 6262422 ~ 6267501 (+)
rasd3 zgc:152698,LOC107565554,LOC107692726 coding downstream 188900 6288730 ~ 6292181 (+)
G1201 NA non-coding upstream 3192 6090845 ~ 6091157 (+)
G1200 NA non-coding upstream 3896 6090173 ~ 6090453 (+)
G1199 NA non-coding upstream 4494 6089509 ~ 6089855 (+)
G1195 LOC107751037 non-coding upstream 17063 6075698 ~ 6077286 (+)
G1161 NA non-coding upstream 232471 5832309 ~ 5861878 (+)
G1206 NA non-coding downstream 15134 6114964 ~ 6115281 (+)
G1287 socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765 non-coding downstream 120094 6219924 ~ 6221396 (+)
G1292 NA non-coding downstream 127462 6227292 ~ 6277288 (+)
G1301 NA non-coding downstream 179387 6279217 ~ 6280631 (+)
G1332 LOC107692651,LOC107725361,LOC107590714,LOC107722945,LOC107702522 non-coding downstream 232246 6332076 ~ 6345567 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other upstream 6694 6057404 ~ 6087655 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other upstream 213215 5879460 ~ 5881134 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other upstream 1068435 4979125 ~ 5025914 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other upstream 1117086 4967186 ~ 4977263 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other upstream 1149508 4938181 ~ 4944841 (+)
G1318 NA other downstream 186028 6285858 ~ 6287198 (+)
G1414 NA other downstream 433672 6533502 ~ 6536957 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other downstream 611805 6711635 ~ 6845548 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other downstream 671656 6771486 ~ 6782141 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other downstream 746670 6846500 ~ 6860270 (+)

Expression


Co-expression Network