efnb2b (efnb2b,LOC107725384,LOC107701778,LOC107590693,LOC107702517,LOC107705455,LOC107565280)


Basic Information

Item Value
gene id efnb2b
gene name efnb2b,LOC107725384,LOC107701778,LOC107590693,LOC107702517,LOC107705455,LOC107565280
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5646146 ~ 5655085 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242075.1
TGGGCGGGGCCTAACGGCAACACTGGGTTGTCCTGAGAAGTCTCTGAGCACGTCTTGAGGGCACTCCAAGACTGGCAGAGTTGAATGCAAAGACGAAGAACAGGAGAAGCACTGATACCGCCTTTAGATTAGACCCCAGCAACATCTGACTTTCAGAGCTATGCTGCCATTCCGCGCTGTCTGACTCGTCTCTCTGCGGTCGTAAGAATGTCCACAGGCGCTGTTTCCCAAAGGATgcgcattaaaacattttaaagaaccTGATGGATTATCGCACAtctttttgttaaatttgcCCCTTAGAGTGCCGGTTGCGAAGGAGCTGTTATTTTAGGAGGTCTTGgcgaatagattttttttttgtttgtttttttttttcgtttcgAAATCAGACGCTTTTCCAGCAGATGATAGCGAGTCGGATTGTTCTCGTATTAGTGCCCGAGGACCCGTCGCCGTTATAATCTAATTCGGACCGGTGAGCTGTTTTGCATCGCGATGGATACAACTATGTGGAGCTATATTTTAGGTCTTTTCATGGTTGCTTGTCGAGTAAAACTGGCTCGATCAACAGTTTTAGAGTCAATATATTGGAATACTTCGAACACCAAGTTTATCCCAGGAAGGGGTGTAGTACTATACCCTCAGATCGGAGACAAAATGGACATTGTGTGTCCAAGAATCAAGCCAGGCTCCACTGAGCAGACGAACATTGAATACTTCCGGGTCTATCTTGTTCCCAAAGAACAACTTGAGACCTGCCGAGTCATTAAGAGCGACATGTTACTGCTCAACTGTGACAAGCCGGACCAGGACGTGAAGTTCACCTTCAAGTTTCAAGAGTTCAGCCCCAACCTGTGGGGCCTGGAGTTCTACAAAGGAAAGGACTATCACATCATCTCCACATCAAACAGCACTTTTGAGGGTTTGGACAACCACGACGGCGGTGTCTGTAAGACCAAATCTATGAAGCTGGTCCTGCGAGTTGGACAGAgtcctACAGATTCGTTCCCAGCTAAAAACTATCCAACTAGATATCCTCCAAAATACCCTGAAAGTAAGGAAAAAAACACCTTCAGCAAAGAAAACGATGCTGTCAACAGAGTTGACCCCCTGCAGAACGGTGAATCCAGAGACAATACCGGAGAGTCTGTAGGATCGACTGGATCTGAAGTAGCCCTGTTCGCTGGCATCGCGTCTGGTTccgtcatcttcatcatcatcatcgtcgcCGCTCTGGTAGCGCTGCTGCACCGGCGTCACCAGAAACACTCTGCGCAGTGCTCCGCCCAGCTGCCCTTAAACACGCTGCCCAAACGCGGAAGCGCAGCCAGCGGCGGCAGCAACAATAACGGCTCTGAGCCGAGCGACATCATCTTCCCGCTCAGGACCTCAGGAAGCATGTACTGCCCGCACTACGAGAAGGTCAGCGGCGACTACGGCCACCCTGTCTATATCGTCCAAGAAATGCCGCCGCAAAATCCTGCAAACATTTACTACAAGGTTTGACGGAGAATGGACAACAGGGAAAGGCCGAACGGTCACAGACATCAGCGTTTTGATGCCTCTCAGATGGTTTAGCTCTATCAGCTGGATGATAGAAGGGCTGAGGTGTCGTCTAGTTCAGGAGAACTTGGTTTTGAGATTTCTGGATTAGTTGCTGGTGGACATGGAAATTTGCTCTTCTGTTTATACCTTAAAACTGGATGGCTTTCAAAGCCTAGAACAATCTTACAGATGAACTTGCTGCAAGGTCATGCTgaataaacatgattttgttacaaaatta

Function

symbol description
efnb2b Predicted to enable ephrin receptor binding activity. Acts upstream of or within Kupffer's vesicle development and blood vessel development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in margin. Orthologous to human EFNB2 (ephrin B2).

NR:

description
PREDICTED: ephrin-B2a-like

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0050920 regulation of chemotaxis biological_process
GO:0002042 cell migration involved in sprouting angiogenesis biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0008039 synaptic target recognition biological_process
GO:0007412 axon target recognition biological_process
GO:0007155 cell adhesion biological_process
GO:0035475 angioblast cell migration involved in selective angioblast sprouting biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05463 EFNB; ephrin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242075.1 True 1789 mRNA 0.48 5 5646146 5655085

Neighbor

gene id symbol gene type direction distance location
LOC122342384 NA coding downstream 17079 5625710 ~ 5629067 (-)
mxa mxa,LOC107725377,LOC107565622,LOC107702551 coding downstream 30031 5611908 ~ 5616115 (-)
klf7a klf7a,LOC107725403,LOC107752450,LOC107676060,LOC107674020,LOC107556267 coding downstream 570535 5038724 ~ 5075611 (-)
pard3ba pard3ba,LOC107673991,LOC107750057,LOC107676058,LOC107749732,LOC107549438,LOC107556285 coding downstream 749246 4765299 ~ 4896900 (-)
nrp2a nrp2a,nrp2,LOC107556288,LOC107749808,LOC107750056,LOC107673990,LOC107676043 coding downstream 906686 4673689 ~ 4739460 (-)
arglu1b NA coding upstream 1552 5656637 ~ 5661762 (-)
radil radil,LOC107722964,LOC107725399,LOC107564693,LOC107590699 coding upstream 91385 5746470 ~ 5766103 (-)
LOC122347131 LOC107725363,LOC107722975,LOC107590701,LOC103909971 coding upstream 115618 5770703 ~ 5776946 (-)
LOC122353693 NA coding upstream 122486 5777571 ~ 5777657 (-)
LOC122347093 NA coding upstream 129636 5784721 ~ 5789621 (-)
G1117 NA non-coding downstream 38228 5579526 ~ 5607918 (-)
G1124 LOC107701616,LOC107565289,LOC107705456,LOC107702505 non-coding downstream 79168 5561377 ~ 5566978 (-)
G1116 LOC107565289,LOC107701616,LOC107705456,LOC107590690,LOC107702505 non-coding downstream 85291 5560618 ~ 5560855 (-)
G1115 NA non-coding downstream 88804 5556880 ~ 5557342 (-)
G1114 NA non-coding downstream 90396 5555490 ~ 5555750 (-)
G1146 NA non-coding upstream 122013 5777098 ~ 5778154 (-)
G1151 NA non-coding upstream 134582 5789667 ~ 5789919 (-)
G1240 NA non-coding upstream 315305 5970390 ~ 5974062 (-)
G1246 NA non-coding upstream 365471 6020556 ~ 6020931 (-)
G1248 LOC107725398,LOC107692671,LOC107722970,LOC107722977,LOC107590704,LOC107564637,LOC107702540 non-coding upstream 376811 6031896 ~ 6033999 (-)
mdh1b mdh1b other downstream 685936 4956119 ~ 4960210 (-)
G820 NA other downstream 1346953 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 1631859 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 2361360 3136508 ~ 3284786 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 2956682 2688765 ~ 2689464 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 189059 5844144 ~ 5853249 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 456378 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 565519 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 612578 6267663 ~ 6274751 (-)
gng13a NA other upstream 671938 6327023 ~ 6328341 (-)

Expression


Co-expression Network