LOC122347076


Basic Information

Item Value
gene id LOC122347076
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6074411 ~ 6078273 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242088.1
ATTATTTAGAGCTTCGATCTAACTTTTTGAGAGAAATCTTTGAAgtctaaaaaataaagcattcacagattaatgtttaaatatcacaaaatgttATAGATATATCTCATTAATGAATCATCCTCATGTCATTGTCACCGGTAAGATCCTCATTCATCTTtggagcacaaattaagatatttccgatgaaatctgagagctttctgaccctgcatagacagcaacacaactaccACACAACTATAAGAAAATAGTGCACGACATCAGTGGTTCGACCAAAAAATGTTATGAAGCCATGACAATAATTTTGGTTTGCAAAGAAATCAatctcttctgtgtcagtcttTGCATGTTAATGAGAATATcatataaaatttcatttatcatttagtttttcttgGTTGCAATCTATAAACcgatcaaaatataaatatttaagtcGAAAAACATACCGACTTTTAGCTTAATCATACTTTCAAATACTattacactaaataaaaatggggGAAAGATTTTCTTCTACTTGCAAGAACGTAACTTTGATAAATATTGGATGTTGATTAATGATTGTGTCTCcagctgtttctttaaaagtagCGATGGCCTCAGCAGATCAATAGTGCAGACCTGCTCGTTGGTTAAAAATCAGACGCAGTGCAATGTTGTGGCTCGCCTGTGAAAGCCTAGTCATGCTGTGTGAACGCTGTCCAGAAGAGCAGTGCAGCTGCCCAGCCTTCACATGACACGATAAGAAGGAGCTGATTGCATTACCAGAGAACTTGATCCATGATCTTCATCGTGATGTTTCTTCTTCGTGCGCTGATGCTGTCGCTTCTCTTCGGTGCATCGGCCAAAGTTGTGCAGGATTTTCAGAATGAATGCGGCCAATTCTTTGCAAACAGGAGATCACCAACAATATTTCCTGAACCACAATACAGGCAGATCTGCCAAGctctaaataatgtttattattatgccACATTCTATGACACTGACAACAAGATCCCTGTGTACTCTGCCTACAAGTTTGAAGGACTAAAGGACTGCAAAAGAACAAACAGGTGGTACATTGAACCTCAACTTGACGACAAAAAAGAATCATCATCCATGAAATGTGAGAAAGATGTTAAAATACAACAACTTGGAGACCATCAAGCTCTTAATGGTGACTATGATAACTCTGGATACGACAAAGGTCATCTGGCACCAGTCTTCCAGGCACTGTCACAGAGCTGTGCTGATGCCACCTTCACTCTCACCAATGCTGCTCCACAAGACCGCTCTTTTAACCGAGGACAGTGGAAGAAACTAGAAAAAAGCATTGCGGAAGAACTGTCCGAGCAATGTCTATCAAAAAAATATTCGGTCTACATTGTGACAGGGGTGGTACCAGGTgcaagtcaaataaaaaatagagtaaaaGTGCCTAGTCACTTCTGGACCGCATACTGCTGCTTAGACAACAATAACAAATGTCAGATCTCAAGAGGGTTTATTGGAGAGAACAAGAATATTACTCCCAAAGACAAAACTGTGGGGGAATTAGAGAAAGATCTGACAACACTTTATAATGTTGGTTCATTTGAGTTGTTTGATAACTCTATAAAACTCCCACAGCAGAAACAAAGTGAACtctttcataataataaagcacCAGTGAGCTATTGTCTGAAAGAGAAACTTTATCAAATGTTTTCCTCGTTGTTATTGTGACTTCTggtttaattgtaattgttagcagagtcattaaaaaaactgaattcgGATTTCACAAAAACTGCCTAATGTAAGTGTTTTTCAAAGAAGAGAAATCAAGAAAAAATAGTGGATGCTGTACAGTCTTTGATAGACATTAATTCACACTTACCCAGGTTTAGAGTAAGAACCGAAGCTTtggagaaaaattttatgaTTAATTGCTATAGGAATTTGGGAAGCATCTCATAAAAATAAGGTGGCGTTGTCTGCTTACTGACTAAAAATATGCCCCGATCTGCTATACGGATACCTCGAATAGCACTTTCTCATATAAATATTGACAGTAGCTGCACGACATGGAGAAATAAATAGGAAGAAATATTGACACCCCTGCCTCACTCCTCTGGATAAACTAAACCTGGGTGAAATGCCATAATTTAATCAAAGCACttacattattgttttatttactcttCAAAAACATATCCACAAAACCAAATTTTACTAATGAATGAAACTGAAGTTCTAAAGAATCAAAAGCCTTTTGTAAGTCTAAGTAAAGAAGGAAGCGGTCCTCCTGAATCAATTCTGAATAGTCGAGTAAACCAATAATCAGTCTAGTCAGGGGGAGAGTCTCATTTTTGATGCTTTCTTCAAAAACCTTAAGTAAAAAAGGAGACAGTTCTTTAGAGAACTGTTTGTATAACTCTTGTTTTTAACCTACTAACTTCAGATAAGGACATTTCATTGTCACAAAAAATTCTGCCATCTCTTGTAACAGCCTTACAATTTTTAACAGTCTCTAGAAAAGTACaggctgcattttaaaataaagattactATAAAATTTAGCACAGAAAAAGTATTAGAACTCCCTCGTCCATCTATTTTTGTCTAGATCTAATGTAGACACCCTGTACCATATAAGTGtacatttaatctaatttagACTGCAGGTCAGCTTATCTGATTCAGAAAACAGCTCTGGGGATTTTAGAGGAAAGGATTGCAATTTTAGACACCACCTTAGTTCAAGTTTAGCTTAATGCATATACTGCTGAATGTTCCCAAATATTTACTAGTTTCAAACTTTATCAACTCCTACTGGCAACAAAATGAATCTGACACTAAAGCTCTTCTCCAGTACCGCTTAATCAGTAATGTAATATTCttcttaaaggtgctgtatgttttgagctttttctgtgtttattgaCAATATTACCGCAAGATAAATGTATCAGTCGTTGTTGGAAACATTGTATTGTACTAAAAGActaaaatgttgcttttcaCAGCAAAGTGACAGACACTTACAACACAATAGAGAGAAATGATAAACACTTTCTGCATCTGT

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K15049 ENDOD1; endonuclease domain-containing 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242088.1 True 3055 mRNA 0.36 3 6074411 6078273

Neighbor

gene id symbol gene type direction distance location
LOC122347124 NA coding downstream 469 6071930 ~ 6073942 (-)
ptcd1 LOC107692668,LOC107725401,LOC107722939,LOC107590737,LOC107565220,LOC107575409 coding downstream 15146 6054892 ~ 6059265 (-)
zgc:112980 LOC107564628,LOC107692670,LOC107702537,LOC107722968,LOC107725351,LOC107590736 coding downstream 26602 6039555 ~ 6047809 (-)
syngr3b syngr3b,LOC107692735,LOC107590758,LOC107722933,LOC107702512,LOC107565597,LOC107725368,LOC108441471 coding downstream 94708 5974469 ~ 5979703 (-)
grapb grapb,LOC107701786,LOC107564666,LOC108258884,LOC107722955,LOC107702513,LOC107590757,LOC108441477 coding downstream 203654 5861026 ~ 5870757 (-)
fbxl18 fbxl18 coding upstream 143 6078416 ~ 6083178 (-)
actb1 actb1,actb2,actbb,LOC103039558,LOC102799139,LOC103383494 coding upstream 5926 6084199 ~ 6087762 (-)
abcg2b abcg2b,LOC107692667,LOC107725367,LOC107564610 coding upstream 21703 6099976 ~ 6106980 (-)
grin2ab grin2ab,LOC107564541,LOC107692695,LOC107722958,LOC108439083,LOC107725390,LOC108258284 coding upstream 60350 6138623 ~ 6205146 (-)
ndufab1a ndufab1,LOC107725395,LOC107590767,LOC107702508,LOC107722929 coding upstream 198784 6277057 ~ 6280616 (-)
G1257 NA non-coding downstream 6797 6066311 ~ 6067614 (-)
G1254 NA non-coding downstream 11226 6062356 ~ 6063185 (-)
G1248 LOC107725398,LOC107692671,LOC107722970,LOC107722977,LOC107590704,LOC107564637,LOC107702540 non-coding downstream 40412 6031896 ~ 6033999 (-)
G1246 NA non-coding downstream 53480 6020556 ~ 6020931 (-)
G1240 NA non-coding downstream 100349 5970390 ~ 5974062 (-)
G1263 NA non-coding upstream 10750 6089023 ~ 6089403 (-)
G1282 NA non-coding upstream 135368 6213641 ~ 6214547 (-)
G1288 NA non-coding upstream 139971 6218244 ~ 6218589 (-)
G1394 NA non-coding upstream 311147 6389420 ~ 6389637 (-)
G1398 NA non-coding upstream 335109 6413382 ~ 6413581 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other downstream 221162 5844144 ~ 5853249 (-)
mdh1b mdh1b other downstream 1114201 4956119 ~ 4960210 (-)
G820 NA other downstream 1775218 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 2060124 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 2789625 3136508 ~ 3284786 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 33190 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 142331 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 189390 6267663 ~ 6274751 (-)
gng13a NA other upstream 248750 6327023 ~ 6328341 (-)
gaa2 si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 other upstream 377771 6456044 ~ 6468254 (-)

Expression


Co-expression Network