syngr3b (syngr3b,LOC107692735,LOC107590758,LOC107722933,LOC107702512,LOC107565597,LOC107725368,LOC108441471)


Basic Information

Item Value
gene id syngr3b
gene name syngr3b,LOC107692735,LOC107590758,LOC107722933,LOC107702512,LOC107565597,LOC107725368,LOC108441471
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5974469 ~ 5979703 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242231.1
ACGCGCTCGGCTCTCCTCTCTTCTTCCGCAGAATATCGCACAGCAGCAGCAGTCGGCGCGCCTCTGGGAGGATGGATGGAGCGGGCTCGTTCGGAGCGGGCCGAGCCGGTTCGGCCTTTGATCTGATTGTGTTCATCAAACAACCGCAGACGATCCTGAGAGTCCTGGCATGGATCTTCTCCATGGTGGTCTTTGCTTCTATAATAAATGAGGGCTATGTGAATATGGGCAGCGAGCGACTGCACTGTGTCTTTAATAAGAACGCGGACGCCTGTAACTACGGCATCACTATAGGAATTGTGGCTTTCTTAGCCTGCGTCTTGTTCCTGGCCCTGGACGTCTACTTCCCTCAGATCAGCAGTGTTAAAGATAGAAAGAGAGCCGTGCTGGTGGAGATAGTTTTTTCAGGATTCTGGACGTTCCTTTGGTTTGTAGGATTCTGCTTTTTGGCCAGTCAGTGGAGCCGTACGTCCCCTGAGGAGCTGCCACTGGCTCAGGCGTCAGACGCAGCACGAGCGGCCATCgccttctctttcttctccatACTCACCTGGGCGGGCCTGACGGTGTGCGCCGTTCAGAGGTTCCTGCTCGGTACTGACATGACCCTGTTCACCACCGAGCACATGCCTGGCCAGCCGCCCAAGCAGCCGTACCCCTCCAACGACGTCATCGGTCAGACCACCATCCCCGTCAACGCTTACCAGAGTCCACCGCTCATCGAAACCGTGGAGACCCGCCCCCCCGGATACAAGATCCCGCCTGCGTTTTAATCCACAACCAATCAGAAGGCAAGGAATATAGCAGCGCTAAAGGACAGAGTATAGACTGCCGTCAATGTTAGCTAAATGTATCGTATTGTAACGCGTTTTAGTAACGGTTTGGCAAGGGGATGATGCTCACCTTCTGTAGTCCACACTATAATACAGTCTGATAATGTATAGTCTCACCTTAACCTGAGCAAAGATGGATGTTCTGGGTTGACTGTGATTGCCTACTCAGACCTTTTACATTCGGCTACCAATAGCTGTGAAATCACCACAaggaaattattttgtttaattaaagaaatgaaaattacttaCAGGTGCACTAAGTATTGGCTGTTGcgtcatttaaaagcaaaagtttTTGGTGGGATTTAATTTTGACAAATCATACAGATGATCTAAATGATGCCAGtgcttattaaaacatttttgttcatttaaataaggCGATTGAAATAacactgattaaataaaatataaatctcaCCTGAAAACTTCAAActtgaaaaaaacttttgactttttGGCCAATAATacgtagtaataataataatagtcatatTTCATATCTAAAAGTTACtacatattttcctttttttccaggGTAAATTTTTTCCCATATGCAAAAGTTACTTGGTGCACGTTTAAGAATAACAAAAGTGAAGCTtagattgttattatttttgtgtttctgattATCAAATGATGCAGTCTTGATTGACGGAAGTACCAAACGATACATCGATCAGCGTCTAATGCAGTTAAAGTTGTGTCAAAATCTGTTGAGAGAATAttagtaaatgtgtttataagTACTTAAGAGTATGTCACTattaggagagagagagataatgaGAAACGGTGAAGAGAATGAgcaaatgagtgtgtgtgtgtgtgtgtgtgtgtgttagctgaTGGACTGTAGCAGTCAGAGACATTCCGGATGAGATAACTGAGATTACTGGAACAGattgtttactttaaaaagcatatttgtgcatatgtgtgtgagtttgtgtgtgtgtgtgtgggagtgtgtgtgtataagtgtggCTGGGATTGTGTGTGCTTGCTCTAATTCTGTCTAATTGCATGATATggtaaaatgccacaaattccCACTGAAGCAGAGatgtaattgttatattttgttaatggAAGAAGTTACAGTGGTTATTAAAGTCTTTAAGATGACATATACAGTACCATGAGGTCCTGAATAAAGAAGTGCAGTGAA

Function

symbol description
syngr3b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Orthologous to human SYNGR3 (synaptogyrin 3).

NR:

description
PREDICTED: synaptogyrin-3-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242231.1 True 2007 mRNA 0.43 4 5974469 5979703

Neighbor

gene id symbol gene type direction distance location
grapb grapb,LOC107701786,LOC107564666,LOC108258884,LOC107722955,LOC107702513,LOC107590757,LOC108441477 coding downstream 103712 5861026 ~ 5870757 (-)
si:dkeyp-9d4.3 si:dkeyp-9d4.3,LOC107701782,LOC107725391,LOC107722956,LOC107590702,LOC107564683,LOC108441467 coding downstream 140776 5792616 ~ 5833693 (-)
LOC122347093 NA coding downstream 184848 5784721 ~ 5789621 (-)
LOC122353693 NA coding downstream 196812 5777571 ~ 5777657 (-)
LOC122347131 LOC107725363,LOC107722975,LOC107590701,LOC103909971 coding downstream 197523 5770703 ~ 5776946 (-)
zgc:112980 LOC107564628,LOC107692670,LOC107702537,LOC107722968,LOC107725351,LOC107590736 coding upstream 59852 6039555 ~ 6047809 (-)
ptcd1 LOC107692668,LOC107725401,LOC107722939,LOC107590737,LOC107565220,LOC107575409 coding upstream 75189 6054892 ~ 6059265 (-)
LOC122347124 NA coding upstream 92227 6071930 ~ 6073942 (-)
LOC122347076 NA coding upstream 94708 6074411 ~ 6078273 (-)
fbxl18 fbxl18 coding upstream 98713 6078416 ~ 6083178 (-)
G1240 NA non-coding downstream 407 5970390 ~ 5974062 (-)
G1151 NA non-coding downstream 184550 5789667 ~ 5789919 (-)
G1146 NA non-coding downstream 196315 5777098 ~ 5778154 (-)
G1117 NA non-coding downstream 366551 5579526 ~ 5607918 (-)
G1124 LOC107701616,LOC107565289,LOC107705456,LOC107702505 non-coding downstream 407491 5561377 ~ 5566978 (-)
G1246 NA non-coding upstream 40853 6020556 ~ 6020931 (-)
G1248 LOC107725398,LOC107692671,LOC107722970,LOC107722977,LOC107590704,LOC107564637,LOC107702540 non-coding upstream 52193 6031896 ~ 6033999 (-)
G1254 NA non-coding upstream 82653 6062356 ~ 6063185 (-)
G1257 NA non-coding upstream 86608 6066311 ~ 6067614 (-)
G1263 NA non-coding upstream 109320 6089023 ~ 6089403 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other downstream 121220 5844144 ~ 5853249 (-)
mdh1b mdh1b other downstream 1014259 4956119 ~ 4960210 (-)
G820 NA other downstream 1675276 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 1960182 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 2689683 3136508 ~ 3284786 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 131760 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 240901 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 287960 6267663 ~ 6274751 (-)
gng13a NA other upstream 347320 6327023 ~ 6328341 (-)
gaa2 si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 other upstream 476341 6456044 ~ 6468254 (-)

Expression


Co-expression Network