slc5a3a (slc5a3a,LOC107730390,LOC107677845,LOC107555245,LOC107559792,LOC107746980,LOC107653669)


Basic Information

Item Value
gene id slc5a3a
gene name slc5a3a,LOC107730390,LOC107677845,LOC107555245,LOC107559792,LOC107746980,LOC107653669
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1264771 ~ 1269925 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242641.1
CTGATGACGTCACGGGCGCGCGTGGCGAGTAAACGGAGGCGCTAACGGTCTCTTCACGCGCCGGTTCAAGACGATTGAGTCCCTGCTTTTAAAGAGCTCGaaTTTATTGCTATATGTGGCCCATCAAATTGTGTATCTCGTGCCACCGACAATTAAAAAATGGCATCAACAATGGAAGCGGCAGATATCGTTGTTGTTTCCATGTACTTCGTTCTTGTCCTGGCCTTCGGCTTTTTTGCGATGTGGAAAGCGAATCGAGGCACGGTGAGCGGATACTTCCTTGCTGGTCGCTCCATGAACTGGATGATGATCGGCGCATCGCTGTTCGTGAGCAACATCGGCAGCGAGCACTTCATCGGACTCGCTGGCTCAGGTGCAGCAAGCGGGTTTGCCGTAGGTGCCTGGGAGTTCAATGCGATTCTACTGCTGCAGCTGCTGGGCTGGGTCTTTATACCCGTTTACATCCACTCAGGTGTGTACACCATGCCGGAGTACCTCTCCAAAAGATTCGGCGGGAAGCGGCTGAAGGTTTTCTTCGCGTCCCTAACTCTGCTTCTTTACATTTTCACCAAGCTCTCGGTGGATCTATATTCTGGTGCGCTATTTATCCAGGAATCTCTGGGCTGGAACCTGTACGTGTCTATAATCCTGCTCATCACCATGACCGCCCTTCTCACAATAACTGGTGGCCTGGTGGCGGTTATCTACACGGACACTCTGCAAGCGTTCCTCATGATATCGGGAGCGCTGTGCCTGATGGCTATCAGTTTAGCTAAAGTCGGAGGTCTCGAGGGTTTGCACAACAAGTACATGAACGCCTCTCCCAGCATCACTGACATCGAGCTCAAGTATAACGTCACCTACTCAAATTCCTGCCACGTGCATCCTAAACCAGATTCGTTTAAGATCTTGAGAGGTCCTTTGGACAAAGATCTTCCGTGGCCTGCTTTTCTTCTGGGCCAGACTCCAGCTTCAATCTGGTATTGGTGCGCCGATCAGGTCATAGTCCAGAGAGTCTTGGCAGCTCGAAATATTGCCCACGCTAAAGGGTCGACCCTGATGGCGGGTGTCCTGAAAGTCCTACCaatgtttattattgtgattCCAGGGATGATCTCCCGTGTGCTCTTTGCTGATGAACTTGCTTGCATCAGTCCAGAGCACTGCATGCAGGTCTGCAATAGCAAAGCTGGTTGCACTAACATCGCCTATCCTCGCCTTGTCATGAACATCATGCCTGTAGGTCTACGAGGCTTGATGATGGCGGTGATGCTCGCCGCTCTCATGAGCGACCTGGACTCAATCTTTAACAGTGCCAGTACTATCTTCACTCTTGATATCTATAAGATGGTACGTCGCCAGGCTTCCTCCAAAGAGCTCATGGTGGTGGGACGCGTGTTTGTGGTCCTAATAGTGGCCATTAGCATAGCCTGGGTCCCGTTCGTGGTTGAGATGCAAGGTGGTCAGATGTTCCTTTACATTCAGGAGGTGTCGGATTACCTCACACCACCCATTGCTGCACTGTTCTTGCTTGGTGTCCTTTGGAAACGTTGCAATGAGACTGGTGCATTCTGGGGTGGACTTGTGGGCTTCTTGTTAGGAGCCGTAAGACTCATTCTTGCCTTTGTTTATAGAGAGCCAGACTGTAAAACAACCGATGACCGCCCTGCCTTCATCAAGGACATTCATTTCATGTATGTGGCGGCTGTGTTGTTTTGGGTTTCGGGGCTCGTGACCGTAGTCGTCAGTCTTTGCACGGATCCACCGAGTAAGGAACAGATTGCTACGACTACTTGGTGGGGACTGCGCAACAGAAATCAAACTGAGAACAGCAAACTTCCTCAGCTTTctgtagaaacaaaaaaagaaaagacagtgGATGTAGTGGAAAATAAACCACCATCTCAGATTATTCAAACCAGAACTGAAATACTTCCAAATTGCCACTTGGAGTCTCAACATACCCAAAAACAACAGGGCAGTGATCATTTAGACAGAGATGAGGGACGATGCGTGAAATGTTTACAGTGGTTTTGgggttataataaaaatgtagaggATCCAGATTCACATTTTGAAGATGAAAGCAGGAATGTTATTGAAATGCTCAGAGAACCtccaaaaatcaaaataatcctGAACCTTGGTCTCTTGTTAGTATGCACACTtggaatttttttgtttgtatatttctcTTTGTAAAATGctcattatttatcattttgctCAAACAGGTTATAGTGATTTTCTTACAGATTATTTTAAACCTATTATATATCTACAGTGTAATTATGgttgtaatttatatttctcaaaagtgttttgcacTGCAGTATTGCATAATAACTCACATTGTAATGCCAAGTATTACTGATTTTTAGTGTTGGTTGGCAATTGTCGTTGCCAATACtgtgcaatatataaataataccagACAGCATTTATGGCCTGATATTGATTACCACAACATTTGATCTCCATTTCTTCTTCCACTTctacttttttattactatcAAGTCCCTACAAAAATCTTGGTTGTGTTGAACCATTTAACGGAACAATAGAATCAAAAATTTTAGCCACCAGCCATTTAAGTACCTTAGTGTAACCTTGATTTTGTTATAAGAGAACAAATgcatttgattgattttgtgTTGAACCTAGAAAAGTTTTTCTTGTTTGCTTATATTTTCGTAACTCAATCAGAGTAATTCAGGTTAAATTTAACAGTCTGTGAGCCGACACATTATGGAAACATCTCTACTCACCGCTGACCCTATTATTGTTTGCTAATGCGTGTTTGTCTTTCTTTAAGGTCACTGGAATTATGTGGGCCAATTAAAAACTCttgttcaaataataaaacattcaaatatttaactCTCCGACCTGAAAAAGCACAGTTGCCCAGTCCGTGTTAGCATAGCGActgaaataaaaccattttggcGTCTCTTTCTCTCGTGCTTTTGTGTTTACTTTGCTTGCGTCCTTCATAGCTGGTGAGCTTTTAGCAGTAAGACGTGGGTATTTCTGTATTCAGCTCTCTGTGGTTGTCTTTCTTTGGAACCTCGTCTGTGTAGATTTGTGGGTTGTTTGTGGTCAGTTGCAGTGAAGAATAAAAACCACTGGAAACTGCAACAGATACAAGGTTTTCACACATGCATGACGAGAGACGGTGAGGTATCTTGGCGATTTGTGCAATTCATATAATGATTCATATAATCCAAACTCAGTTCTTGTATGTGACCTTACATGACAGTTTCTTTAATGCCTGTAGAGTTTGATATAAAATACCGTACAGTTCTCTTACTCTGTGTTTGTATAGGTTtgttgattttacatttttagacagGTTTCCCCTGGGTACAGAGCTAGGTTTATGAAGTTCACTTGTGTGAGAGCTAGTCAAGTTGTCTCGGGTTTGAGCTTTGGCTAAGAACAAGACAAATGTGGTTTGGATGTATCAAGGCCATGCagcttgtgtgaatgtgtatgtgtgtttacaggcAACTGTGAATTCCCAGAAGAGGAATGTACTTtgacatctttaaaataaatgttttaattagctGCATTCCATATTTCTCATTGTTAACATAACTGGTgttcaaaagctttttataaAGGCTGCTTATAGAATTTAAATAAGGTGTTGACAGTCCTAGAATGTATGGGGAAGtacaaaggttttatttagaTGTAGGTTTGGGAATCTCCACCAGTCCCCAAATATCCCCAGTCAAAGTTAACTTAAGGATCACTGACCTGCTGTGAATTTTGACAGGAGATTTATAGATggcatttaattcaaaatgagaGTAAAAATATGGTTAGAAAGTGCAGTAAACCCATTTCGGGAGAGTAATCTGCATTCGACATTTTACTGTGACGTCTCTAATACTGTTGGATTTCATAAACGCTGTGCAGAATGTATATTTGGTATTATGTATGAGTATTGTATACATCATTCCAAAACATTCTATGCTTTCCCCATTGaatatttgttacttttttgtgcaatttgtacagtactttacagtaaaaaatggcCACACCTTGCATCCTTTTGAAATTAACTAGTAAACATTACAGTTACAgcacataatatatacacatatataaacactcatttaaaaaaattgggtTGGTAggggttttttatatatatttgaaagaaatctcttatgctcaccaggtctgcatttatttaatcaaaaatactgtaaaatggcATGTGAATATCTGTTAGCATGTCATTTATTTTCGTGATctaatctgaattttcagctttattaatccagtcttcagtgtcacatgacccttaagaaataattctaatatactgatgctcaagaaacatttctgagaaTTGTTGCGCTGCAGAATATTGATgcaatagaaagtttaaaagaacagcgttataaatatctctttttcatcaatttaatgctTCCTTAATAA

Function

symbol description
slc5a3a Predicted to enable glucose:sodium symporter activity. Predicted to be involved in inositol metabolic process and myo-inositol transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A3 (solute carrier family 5 member 3).

NR:

description
PREDICTED: sodium/myo-inositol cotransporter

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14383 SLC5A3, SMIT; solute carrier family 5 (sodium/myo-inositol cotransporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242641.1 True 4464 mRNA 0.41 2 1264771 1269925

Neighbor

gene id symbol gene type direction distance location
rap2ab rap2ab,rap2a,LOC105911819,LOC106582448,LOC106512668,LOC101166017,LOC105933629,LOC103391592,LOC105907999 coding downstream 99836 1148672 ~ 1164935 (-)
kpnb3 kpnb3,ipo5,LOC107677849,LOC107653674 coding downstream 127706 1117841 ~ 1137065 (-)
LOC122353706 NA coding downstream 135134 1129499 ~ 1129637 (-)
farp1 farp1,LOC107730395,LOC107677850,LOC107653673,LOC107560794,LOC107744955,LOC107559785 coding downstream 148336 1050746 ~ 1116435 (-)
LOC122342059 ncam2,LOC107748174,LOC107756756,LOC107673712,LOC108426076,LOC107721821 coding downstream 438545 766226 ~ 826226 (-)
ptgfrnb LOC107730397,LOC107555256,LOC107653676,LOC107559799,LOC107677843,LOC107746979,LOC107717917 coding upstream 7575 1277500 ~ 1315538 (-)
si:ch211-132g1.1 NA coding upstream 48865 1318790 ~ 1324793 (-)
si:ch211-132g1.6 NA coding upstream 61758 1331683 ~ 1333824 (-)
LOC122350472 atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679 coding upstream 77569 1347494 ~ 1353796 (-)
LOC122350536 atp1a1a.2,atp1a1a.4,atp1a1a.3,LOC107698906,LOC107555259,LOC107717913,LOC107555265,LOC107653679 coding upstream 94617 1364542 ~ 1370987 (-)
LOC122347488 NA non-coding downstream 1568 1256189 ~ 1263203 (-)
G231 NA non-coding downstream 290802 973746 ~ 973969 (-)
G125 NA non-coding downstream 374184 890244 ~ 890587 (-)
G99 NA non-coding downstream 540735 723745 ~ 724036 (-)
G73 NA non-coding downstream 816131 448328 ~ 448640 (-)
G244 NA non-coding upstream 12913 1282838 ~ 1284809 (-)
G247 NA non-coding upstream 74373 1344298 ~ 1346789 (-)
G260 NA non-coding upstream 171163 1441088 ~ 1441512 (-)
G297 NA non-coding upstream 297113 1567038 ~ 1567532 (-)
G303 LOC107698893,LOC107555241,LOC107751081,LOC107653672,LOC107571885 non-coding upstream 310818 1580743 ~ 1582087 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 33124 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 516407 738137 ~ 748364 (-)
G67 NA other downstream 828646 435808 ~ 436125 (-)
G20 NA other downstream 1077686 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 322144 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1418840 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1866583 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2737915 4007840 ~ 4014287 (-)
G820 NA other upstream 3028385 4298310 ~ 4299193 (-)

Expression


Co-expression Network