rap2ab (rap2ab,rap2a,LOC105911819,LOC106582448,LOC106512668,LOC101166017,LOC105933629,LOC103391592,LOC105907999)


Basic Information

Item Value
gene id rap2ab
gene name rap2ab,rap2a,LOC105911819,LOC106582448,LOC106512668,LOC101166017,LOC105933629,LOC103391592,LOC105907999
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1148672 ~ 1164935 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242829.1
CGTCAATCCCGCAACAAAACTCCTATCCTCGAGCCGAGACGGTGTGCTCGGGCTTCAGAAGGTCTCCACCCGAGAGTATGGCGGTTGAGGATGCTGGAAGATGCAGAAGAATAGCTATTCCGGAATGCAGCAGCGTCCTTAAGGATCTCCAAATGACGCTCGGAGGGGACGCGTGATGACGGGGCGCGACGCGCTTTTATAACCTAGAACGCAAGCCAATGCATGTTAAAAGATTATTTCTCCAAGCAGCTGTCGGGTTCTGGCTATTCGAGGCGGCTAGAGATGCCATGAAGTCCGCGCATCGGCTCTTTGTGCGCCTCTGTTATTTGTCTCTATGGTGAGTGTTGCAATACAGCCGGCCATGGCTCCGCGTCTGCTCGACTTCTGCGATATTCAAGGCAAGTTTCCCGTGGCATCCGATCGGTTTGGACACTGTTAGCTGGCTCCGTTACGCGCGTCACGTCGGTTCGCATCCGTGCGCAATGCGCGAGTATAAGGTGGTGGTGCTGGGCAGCGGAGGGGTCGGGAAGTCCGCGCTCACGGTGCAGTTCGTGACCGGGACCTTCATCGAGAAGTACGACCCGACCATCGAAGACTTCTACCGCAAGGAGATCGAGGTGGATTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCCGGGACGGAGCAGTTCGCGTCCATGCGGGATCTCTACATCAAGAACGGCCAGGGCTTCATCCTGGTCTACAGCCTGGTCAACCAGCAGAGCTTCCAAGATATAAAGCCCATGAGAGACCAGATCATCAGGGTGAAGAGATACGAGCGCGTGCCCGTGATTCTGGTGGGAAACAAGGTGGACCTGGACAACGAGCGCGAGGTTTCATCGAGCGAGGGCCAGGCTCTAGCTGAAGAATGGGGCTGCCCGTTCATGGAGACGTCGGCCAAGAGCAAAACCATGGTGGACGAACTGTTCTCGGAGATAGTCAGGCAGATGGACTACGCCTCTCAGCCGGATAAGGAAGACCCGTGCTGCTCCTCCTGCAATATACAATAACCCCTCACAATCACACGAGGTTCTCGGAGGGGTTCCACGTGGAGATCGTCGCTAAAGAGTGGTCTTCAAACACGCGTGAACGGCGTCTACACACTAGAGAATGCTGCAGATCCGTTCTTTTGATGCATCGCGTACATTTATGAGCAAACGTTCTTCCGGTAACGTTAATTGAATGTTCGTTCAACGCGCTCTGCTGTAATGGTCTGATGTTCTCAGTGTTATTAGTGACCCAcaaccacaaaagcagtcataaaggttgtttttttggaaatttaTTTACGTATCAGACGAATAAAAAAGCTTTCCGTTGACGTATGGTTTGTtagctatttgaaaatctggaatctaagtGTGGGAAAAATCGAAATACATAAAATCGGCAAACGTTTAAattcttagcgatgcatattactaatcataaATGAAGCTTTGATGTGTTTACAGtagaaaatatcttcatgggaCATGATCTTTCCTCAATATCCAAAagattttttggcataaaataattttttttttacttttgacacatataatttattgttggctattgctataaataaacctgtgctacttatgactgcttttgtgctccaggctcacCTTTACACATACATTTCTTAAACGTTTTAATTGGTCGTTTTTCTAACATTGTTTAAACGTTACTATTTGATTTGGAACGTTAGAGGACCTTCAAAAGTGTCTgcaaaatggaaacaaaaagaacatttaaaacataaaaaaaaaaaatgttttgggtgTTCAGagacaaactgaaaaataacGCTTTTATAACATAATAGGAATATTAGCAAAACGTCTTTTCACAtcgtttttttgttcttcttgaTCGTGCAAACATCACAGTAAATATTAATGGAATGTTATCATTTTACTTCTGAATGTTCTCTGAACGTTCTGAAAACGTAAGTGGTAACGttatagaaatgtattaaaatgttcccTGAGCCGTgcataaataattgattttgtGAACATTCAATAGTAAAATTCGCATAAAACTAAAAGAACGTTTTGAACGAGGCCATTGATAAATAACTTTTTCATAACGTAATGGGAACGTTAGCAAAACATTCTTTTTTGCTAAGTTGGTAATGCAAATGTTACagaatgttacttttgaacGTCCTCTGAACATTCCGAAAACGTAAgtggtaacatttaaaaatgtatcaaaatgttCCGTGAGCCATGTGTAAATAATGATTAAGCGCTAACAATAAATGTTCTATTAATGTCGCTGGAAAGAACGTTTTGGGTTGGCGAAAGTGACGTTAAATCGAAAATCCCGCTTGTGTTTCCCTCCAAAAACGGATCGCGAAGTGCGAAGCTTTCTCTAGTGTGTAAATGCCTTAATCCGACACGTTTATGAtgaataaattaacaagaaactgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtcaaaggGGTTAAAAAATGCACCAAACTTGAGTCTTTCTTTTCCCCGCATGTTTTCATTCTAAGTCTGACGCTGTTCGCAAGAGACTCGATCGCGTTGATTTCGTTTAGTTTGCACATATAGAACCTGATGTCTTAAACTGccattactttaataaagagCCAGAATGAGCTAGTTCTGTTCTTCCAAGCGGCCCGCCGTCAGACGTGGTGACGTTTCCTCCGAGGGACTCTCAGACGATGTGTGCGCCGTTGCAGCGATGAGGGGCTTTACTTTGAGGGACATTTTCTTTGAGGAAGCCAAATAGGATGCTGAGAAGCACTTTTCTTTTGTAAAGTCGTGTCTGTTTTGATTTATGAAACTGCTGGGAATATTCAGCTGATTATGTTGTGGTTTCTACTTAGCACCTCGATATAGAATGTTGCAGATACtgaattatgtattttgtaataatgtagtAAAACAATCATGGGATTTGCTTTAGAATAATCGGGTGGGAACAGTATTTGTCATGAAACGCTTTCGGCACTTTCCACAAGAAGAGTCCAGATGTCCTGTTACTTTTATTTGAAGcaataaagatttaaagaagCGGTTCGGTTAACCTAACATTTAATGTAGGCAGTTTTTAACATCTCAAATGTCTGTAAGAAcccttaaaaatgacaatttgtcCTTTTACACCTCAAGAGGTCTAGATGgttaaaatcattaatatatGTTGAACTACtatttgattaaatgcaaaaaataaat

Function

symbol description
rap2ab Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Rap protein signal transduction and negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be located in recycling endosome membrane. Predicted to be active in plasma membrane. Orthologous to human RAP2A (RAP2A, member of RAS oncogene family).
rap2a Enables GTPase activity; guanyl ribonucleotide binding activity; and magnesium ion binding activity. Involved in several processes, including actin cytoskeleton reorganization; microvillus assembly; and positive regulation of protein autophosphorylation. Acts upstream of or within establishment of protein localization. Located in plasma membrane and recycling endosome membrane.

NR:

description
uncharacterized protein LOC100003903

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07837 RAP2A; Ras-related protein Rap-2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242829.1 True 3237 mRNA 0.42 2 1148672 1164935

Neighbor

gene id symbol gene type direction distance location
kpnb3 kpnb3,ipo5,LOC107677849,LOC107653674 coding downstream 11607 1117841 ~ 1137065 (-)
LOC122353706 NA coding downstream 19035 1129499 ~ 1129637 (-)
farp1 farp1,LOC107730395,LOC107677850,LOC107653673,LOC107560794,LOC107744955,LOC107559785 coding downstream 32237 1050746 ~ 1116435 (-)
LOC122342059 ncam2,LOC107748174,LOC107756756,LOC107673712,LOC108426076,LOC107721821 coding downstream 322446 766226 ~ 826226 (-)
LOC122353666 NA coding downstream 520854 627700 ~ 627818 (-)
slc5a3a slc5a3a,LOC107730390,LOC107677845,LOC107555245,LOC107559792,LOC107746980,LOC107653669 coding upstream 99836 1264771 ~ 1269925 (-)
ptgfrnb LOC107730397,LOC107555256,LOC107653676,LOC107559799,LOC107677843,LOC107746979,LOC107717917 coding upstream 112565 1277500 ~ 1315538 (-)
si:ch211-132g1.1 NA coding upstream 153855 1318790 ~ 1324793 (-)
si:ch211-132g1.6 NA coding upstream 166748 1331683 ~ 1333824 (-)
LOC122350472 atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679 coding upstream 182559 1347494 ~ 1353796 (-)
G231 NA non-coding downstream 174703 973746 ~ 973969 (-)
G125 NA non-coding downstream 258085 890244 ~ 890587 (-)
G99 NA non-coding downstream 424636 723745 ~ 724036 (-)
G73 NA non-coding downstream 700032 448328 ~ 448640 (-)
G72 NA non-coding downstream 700790 447508 ~ 447882 (-)
LOC122347488 NA non-coding upstream 91254 1256189 ~ 1263203 (-)
G244 NA non-coding upstream 117903 1282838 ~ 1284809 (-)
G247 NA non-coding upstream 179363 1344298 ~ 1346789 (-)
G260 NA non-coding upstream 276153 1441088 ~ 1441512 (-)
G297 NA non-coding upstream 402103 1567038 ~ 1567532 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 400308 738137 ~ 748364 (-)
G67 NA other downstream 712547 435808 ~ 436125 (-)
G20 NA other downstream 961587 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 427134 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1523830 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1971573 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2842905 4007840 ~ 4014287 (-)
G820 NA other upstream 3133375 4298310 ~ 4299193 (-)

Expression


Co-expression Network