eed (eed,LOC107751659,LOC107662672)


Basic Information

Item Value
gene id eed
gene name eed,LOC107751659,LOC107662672
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2720655 ~ 2723920 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243767.1
CGAGCGCGCACGCTCTGCTTTCCGGCAGCGTGGCACTGCTGGTGGAGAAAGATGCGGAGGAAGATGTCTGAATCTCATGCCGAGGCGGGAAACGAGATGCCGAATAACAAAAAGCAGAAATTAAGTAGTGATGAAAACAGCAACCCCGATTTATCAGGAGACGACAATGATGATGCGGTCAGTGTTGAAAGCGGCACAAACCCAGAGCGGCCAGACACTCCCACGAACACAGCCAATGCCCCGGGCAGAAAGAGCTGGGGCAAAGGCAAGTGGAAGTCCAAGAAGTGcaaatattcctttaagtgtGTCAACAGTCTGAGGgaGGATCACGGCCAGCCGCTGTTTGGAGTCCAGTTCAATTGGAACAGCAAAGAAGGAGACCCGCTAGTGTTCGCAACCGTCGGCAGCAACAGAGTCACTCTGTATGAGTGTCACTCTCAAGGAGAGATCCGTCTGCTGCAGTCGTATGTAGATGCTGACGCAGATGAAAACTTCTACACTTGTGCGTGGACCTTCGACTCGAACACCAGTCACCCGCTGCTGGCCGTGGCCGGATCCCGCGGCATCATCCGCATCATTAACCACATCACCATGCAGTGCGTCAAACATTACGTCGGTCATGGAAACGCGATCAACGAGCTTAAATTTCACCCGAGGGACCCAAACCTGTTGCTGTCGGTCAGTAAAGATCACGCTCTGCGCCTCTGGAACGTTCATACGGACACGCTGGTGGCCATCTTTGGAGGCGTCGAGGGCCATCGTGACGAGGTCTTGAGCGCGGATTTTGACCTGCTCGGCGAGAAGATCATGTCCTGTGGGATGGATcactctttgaaactgtggagGATTAACTCTGAGAGGATGCAGAAAGCCATCCGCGGCTCGTACGAGTATAACCCCAGCAAAACCAACCGGCCTTTCGTGTCTCAGAAGATTCACTTCCCAGACTTCTCCACGCGAGACATTCACAGAAACTACGTGGACTGCGTCCGCTGGCTTGGAGATTTGATTCTTTCAAAGTCATGTGAAAACGCAATTGTGTGTTGGAAACCCGGGAGGATGGAAGATGACATCGACCACATCAAACCCAACGAGTCTAACGTGACCATTCTGGGCCGCTTCGATTACAGTCAGTGTGACATCTGGTACATGCGCTTCTCCATGGACTTCTGGCAGAAGATGTTAGCTCTTGGAAATCAAGTCGGGAAGCTGTATGTTTGGGATCTGGAAGTGGAGGATCCTCACAAAGCGAAGTGTACGACGCTCACGCTGCCCAAATGCACGTCTGCGATCAGACAGACCAGCTTCAGTCGAGACAGCAGTATTCTGATCGCGGTGTGTGATGACGCTTCGATCTGGCGCTGGGATCGTCTGCGCTGATCCTCTCCTGACCTTCGCTGCTCAAATCATTGATCACCGGCTTCTGCTGTCTTCACTTGTCTTTATTCACTTTGCTTTtggcttttgctttttttcgtTTCCATTGTCTTTTGACTGActttaataaaatctatttttctaACCTA

Function

symbol description
eed Predicted to contribute to histone methyltransferase activity (H3-K27 specific) and nucleosome binding activity. Predicted to be involved in chromatin silencing and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone methylation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in several structures, including eye; gonad; heart; intestine; and midbrain hindbrain boundary. Orthologous to human EED (embryonic ectoderm development).

NR:

description
PREDICTED: polycomb protein EED

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035098 ESC/E(Z) complex cellular_component

KEGG:

id description
K11462 EED; polycomb protein EED

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243767.1 True 1526 mRNA 0.51 12 2720655 2723920

Neighbor

gene id symbol gene type direction distance location
hikeshi hikeshi,zgc:110091,LOC106574699 coding downstream 512 2717987 ~ 2720143 (-)
LOC122342272 LOC107751049 coding downstream 2811 2710717 ~ 2717844 (-)
LOC122345881 prss23,LOC107570079 coding downstream 16388 2700490 ~ 2704267 (-)
LOC122353060 LOC107570085,LOC107751087,LOC107711130,LOC107576869 coding downstream 92392 2604404 ~ 2628263 (-)
dusp27 dusp27 coding downstream 122766 2589647 ~ 2597889 (-)
nfkbiz LOC107751657,LOC107575617 coding upstream 2377 2726297 ~ 2732358 (-)
cep97 NA coding upstream 8926 2732846 ~ 2739589 (-)
LOC122353624 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 coding upstream 971245 3695165 ~ 3701245 (-)
ndfip2 ndfip2,LOC107676059,LOC107549434,LOC107750462,LOC107674006,LOC108411896 coding upstream 1807869 4531789 ~ 4546466 (-)
mnx2b mnx2b,LOC107750883,LOC107674001,LOC107556279,LOC107676047 coding upstream 1845914 4569834 ~ 4574420 (-)
G666 NA non-coding downstream 65823 2652717 ~ 2654832 (-)
G652 creg1,LOC107694464,LOC107751059,LOC107551109,LOC107739160,LOC107654633 non-coding downstream 156245 2562191 ~ 2564410 (-)
G653 creg1,LOC107751059,LOC107739160,LOC107654633,LOC107551109,LOC107694464 non-coding downstream 158689 2561355 ~ 2561966 (-)
G638 NA non-coding downstream 161791 2556243 ~ 2558864 (-)
LOC122351916 NA non-coding downstream 168394 2548924 ~ 2552261 (-)
G681 NA non-coding upstream 16307 2740227 ~ 2742428 (-)
LOC122351434 NA non-coding upstream 97268 2821188 ~ 2833731 (-)
G692 NA non-coding upstream 342891 3066811 ~ 3070069 (-)
G695 NA non-coding upstream 388350 3112270 ~ 3120797 (-)
G720 NA non-coding upstream 562036 3285956 ~ 3286209 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 31191 2688765 ~ 2689464 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 1115671 1592069 ~ 1604984 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 1489008 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 1972291 738137 ~ 748364 (-)
G67 NA other downstream 2284530 435808 ~ 436125 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 412588 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 1283920 4007840 ~ 4014287 (-)
G820 NA other upstream 1574390 4298310 ~ 4299193 (-)
mdh1b mdh1b other upstream 2232199 4956119 ~ 4960210 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 3120224 5844144 ~ 5853249 (-)

Expression


Co-expression Network