rcan1b (rcan1b,LOC107555267,LOC107698909,LOC107568778,LOC107653682,LOC107718018,LOC107709340)


Basic Information

Item Value
gene id rcan1b
gene name rcan1b,LOC107555267,LOC107698909,LOC107568778,LOC107653682,LOC107718018,LOC107709340
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1442791 ~ 1455071 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246433.1
TATCAGCTGTTTTGGCCCCTAGTGCAGTCTGTCGCAAGTGTGGACGTCATTTTCGCTTCAGGAATACATCACGGGTTTGCTAGTAACACTATGCAGCACATTGTGCGCTAGAACAGTAGCGTGTGTCAGCTTTGAGGGTTCGGAGACGCTGCTTTTGCAGAAGGTGGAAAGCAGAGCGTGACGCCATGAGCTGAGCGCCGAGACGTTCGAGATCAAAGGCACCGCAGTTGAGATCAAAGGCACCGAGCGCCGCGGTTACATCTGTTGCCATGCAGCAGTCGGAGAGCGGCGGAGGGGCGGCGACTTCTGAAGTCCAGCTCAACGACCAACCCAACGCGCTCATCGCGTGTAAAGTGCCAGAAGAGGTTTTTAATGAGCCGCAGTTAAAGGAGCAGTTTGAAGCTTTGTTCCGTTCCTTTGATCCTGGCACGTCGTTCCAGTTCTTCAAAAGCTTCAGACGGGTTCGGATCAACTTCACTGATGCTCTGGCGGCGGCCGAGGCCCGAGTCAAACTCCATAAGAGCGACTTCAACGGAAAGGAGATGCGTCTGTACTTCGCTCAGTCGGTCCACATCGGCAGTCCTCGTCTTGAGCCTCCTAAACCAGAGAAGCAGTTCCTGATCTCTCCTCCAGCGTCGCCCCCTGTAGGCTGGGCACAGTCGCAGGACGCTACGCCCGTCATCAACTACGACCTGCTGTGCGCCGTGTCTAAACTAGGACCAGGAGAACAGTACGAGCTCCACAGCGGCACCACCAACACCCCCAGCGTGATCGTACACGTGTGTGAGGACGACAGCTCCGAGGGCGAAGACGACACGGCCGACGGCGGCAAGCGCGCGCGGCCCAAGATCATCCAGACCCGCCGCCCGGACTACGTCCCGTCCGTTAACCAGTGAGCGGCTACGTCTGGCCCGCTTCATCTTCGCCAACCAACACCGGGACAACTAGGAAGCGTGCGGTCGTGCAGTTTGTCATCCTCGCCACCGGGGGAGGCCGGCGGGCGCCAGACCCTCTTCCTAGTTAGCGAGGGAGTCGACCATCCTCATAATCTCGCGTTTCATTTCTTAACATCCATCTCCGATGGAGTCAGGGACTCTGAGGACCTGGGGAGGGTTTCTCTCGTCTTACGAATGTCACCGTTTGCTCGACGTCACGactgtgtgttttaataatccCAACGGAAAGATCCGAAGGAGTTTAGTGGCGGCGCCGGCGAACTGAACGCCGTGTCTGAAGTGTGCGTCGTCCTCATCACCTCATTATCACGTATCGTCTCTACGTTTAGTCGGTTAAGCACTCGTGCAGTCTTTGAAcgtcattattattgttgccGAAGTTCTTCACGAGCTCCTCCAAGTATTATGCACTTTAATAATAGAGCCTTATAATGTGGTAAACTGACAACAACATGAAGTACTTGTCTTTGTATATCGGGCGCCGGCTTGGCGACGCGAGCGTTTTCCCGTTCCTTTTCTCCACAATATTCGATTTGATGGGAAGAACggcgttttaaaaaaagacactgaaTTGCGtgcttgtaaaataaaacatcgaCAGCGTGGAGAACATTTTCGATTCCTAGtcaatttgacaaaaaaacccatcttaaatgttaaataaaaatgtttaaataaataaaatggtgcGGACTCAACcatctgtttaatttaattaagttactaaataacttaaagaaaactaatgTGGAGTGATAGCATAGCTGTCtgtaattattaacaaaataaaaatgttattaaacacATATAGCATTTGCACATTGAGAAAGATTTACTCATTGCaacaaacaattacaaagaaaattaaatgagagcattttaagtagaaaaaataactaaaaagtctttttatgttttttttttcccctcaaaatcattcgttttattttacagttacataaTTGGCTGCACGCATTAAAAAAGGTTGACTGTAAATAATTGGATGCATGTATCGAAACGTATATAAAACGCATACGTTGACTGTACACTTCAAACTAAAAGACATAAAGCGTTGTATTAAACGTGAAACTCGTAAGTACGAAGTAATCAAATAAAGTCATCTTCAGCGGCGCACCCGTTACGATCATGATCTTTCTCTGTCCGTCTGCCGCAGAGTTCAGAAATGCAACCGAATTGACGAAAGGAAAAAGCGAAGGGACGTCTCGTAACTAGCCCCATCGCTCGGTCTGGAGAAAATGAATGCGACTCGCTCGATGAAGCGCTCTGTTGTGCTCTACTGTCTTTGGATCTCTTTTCCATTACTGTAGGAGACGTTCTGCCGTCAACCAGTGATTTTAAGCAACTATaacatactgtgtatatttgatGTATTTGAATGTAGCCAATATCTTGAAAAAGCTTGAGGATTTCTATCAACAACCACAACAACTACAAACAATCTTATTCGTTAGCTAGCGAGAATATCGAGGGAGGAGGCATTAACTTACCTTTAATAAAACTATCTTGACCAAA
>XM_043246442.1
cggtGCTCAACAGCTCTACTATAAGCAGCAGCAGATAAACCTGCGAGTAAAGCCGTGACCTCTCAGCACCGCTGATCGCTCGCTAGAAACTTCTGCTGGCACGTGCATGCAACAGTCTCTTATTCTTCTAAAACTGAATCATGCATCTTAAGACCACGAAGTGCAATAACTTCTGCCTGGTGGCCTCACCGGTGGACCTCGAGGTGTTCAGTCGGCCACAGATTCGGGAGCAGTTTGAAGCTTTGTTCCGTTCCTTTGATCCTGGCACGTCGTTCCAGTTCTTCAAAAGCTTCAGACGGGTTCGGATCAACTTCACTGATGCTCTGGCGGCGGCCGAGGCCCGAGTCAAACTCCATAAGAGCGACTTCAACGGAAAGGAGATGCGTCTGTACTTCGCTCAGTCGGTCCACATCGGCAGTCCTCGTCTTGAGCCTCCTAAACCAGAGAAGCAGTTCCTGATCTCTCCTCCAGCGTCGCCCCCTGTAGGCTGGGCACAGTCGCAGGACGCTACGCCCGTCATCAACTACGACCTGCTGTGCGCCGTGTCTAAACTAGGACCAGGAGAACAGTACGAGCTCCACAGCGGCACCACCAACACCCCCAGCGTGATCGTACACGTGTGTGAGGACGACAGCTCCGAGGGCGAAGACGACACGGCCGACGGCGGCAAGCGCGCGCGGCCCAAGATCATCCAGACCCGCCGCCCGGACTACGTCCCGTCCGTTAACCAGTGAGCGGCTACGTCTGGCCCGCTTCATCTTCGCCAACCAACACCGGGACAACTAGGAAGCGTGCGGTCGTGCAGTTTGTCATCCTCGCCACCGGGGGAGGCCGGCGGGCGCCAGACCCTCTTCCTAGTTAGCGAGGGAGTCGACCATCCTCATAATCTCGCGTTTCATTTCTTAACATCCATCTCCGATGGAGTCAGGGACTCTGAGGACCTGGGGAGGGTTTCTCTCGTCTTACGAATGTCACCGTTTGCTCGACGTCACGactgtgtgttttaataatccCAACGGAAAGATCCGAAGGAGTTTAGTGGCGGCGCCGGCGAACTGAACGCCGTGTCTGAAGTGTGCGTCGTCCTCATCACCTCATTATCACGTATCGTCTCTACGTTTAGTCGGTTAAGCACTCGTGCAGTCTTTGAAcgtcattattattgttgccGAAGTTCTTCACGAGCTCCTCCAAGTATTATGCACTTTAATAATAGAGCCTTATAATGTGGTAAACTGACAACAACATGAAGTACTTGTCTTTGTATATCGGGCGCCGGCTTGGCGACGCGAGCGTTTTCCCGTTCCTTTTCTCCACAATATTCGATTTGATGGGAAGAACggcgttttaaaaaaagacactgaaTTGCGtgcttgtaaaataaaacatcgaCAGCGTGGAGAACATTTTCGATTCCTAGtcaatttgacaaaaaaacccatcttaaatgttaaataaaaatgtttaaataaataaaatggtgcGGACTCAACcatctgtttaatttaattaagttactaaataacttaaagaaaactaatgTGGAGTGATAGCATAGCTGTCtgtaattattaacaaaataaaaatgttattaaacacATATAGCATTTGCACATTGAGAAAGATTTACTCATTGCaacaaacaattacaaagaaaattaaatgagagcattttaagtagaaaaaataactaaaaagtctttttatgttttttttttcccctcaaaatcattcgttttattttacagttacataaTTGGCTGCACGCATTAAAAAAGGTTGACTGTAAATAATTGGATGCATGTATCGAAACGTATATAAAACGCATACGTTGACTGTACACTTCAAACTAAAAGACATAAAGCGTTGTATTAAACGTGAAACTCGTAAGTACGAAGTAATCAAATAAAGTCATCTTCAGCGGCGCACCCGTTACGATCATGATCTTTCTCTGTCCGTCTGCCGCAGAGTTCAGAAATGCAACCGAATTGACGAAAGGAAAAAGCGAAGGGACGTCTCGTAACTAGCCCCATCGCTCGGTCTGGAGAAAATGAATGCGACTCGCTCGATGAAGCGCTCTGTTGTGCTCTACTGTCTTTGGATCTCTTTTCCATTACTGTAGGAGACGTTCTGCCGTCAACCAGTGATTTTAAGCAACTATaacatactgtgtatatttgatGTATTTGAATGTAGCCAATATCTTGAAAAAGCTTGAGGATTTCTATCAACAACCACAACAACTACAAACAATCTTATTCGTTAGCTAGCGAGAATATCGAGGGAGGAGGCATTAACTTACCTTTAATAAAACTATCTTGACCAAA

Function

symbol description
rcan1b Predicted to enable nucleic acid binding activity. Predicted to act upstream of or within calcineurin-NFAT signaling cascade. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human RCAN1 (regulator of calcineurin 1).

NR:

description
PREDICTED: calcipressin-1-like

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process

KEGG:

id description
K17901 RCAN1, MCIP1; calcipressin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246433.1 True 2489 mRNA 0.47 4 1442791 1455071
XM_043246442.1 False 2327 mRNA 0.46 4 1442791 1448514

Neighbor

gene id symbol gene type direction distance location
LOC122350642 atp1a1a.4,LOC107717913,LOC107653679,LOC107555265,LOC108429865 coding downstream 29845 1404578 ~ 1412946 (-)
atp1a1a.1 atp1a1a.1,LOC107718011,LOC107555257,LOC107698904,LOC107653678,LOC107717912,LOC107568774 coding downstream 39967 1392929 ~ 1402824 (-)
LOC122350536 atp1a1a.2,atp1a1a.4,atp1a1a.3,LOC107698906,LOC107555259,LOC107717913,LOC107555265,LOC107653679 coding downstream 71804 1364542 ~ 1370987 (-)
LOC122350472 atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679 coding downstream 88995 1347494 ~ 1353796 (-)
si:ch211-132g1.6 NA coding downstream 108967 1331683 ~ 1333824 (-)
urp2 LOC107698908 coding upstream 10366 1465437 ~ 1469101 (-)
wu:fa56d06 LOC107555251,LOC107751082 coding upstream 150805 1605876 ~ 1612082 (-)
n6amt1 n6amt1,LOC107563652,LOC107727005,LOC107698915,LOC107689945,LOC107751077 coding upstream 507243 1962314 ~ 1968862 (-)
LOC122342174 adamts5,LOC107751075,LOC107593743 coding upstream 696580 2151651 ~ 2155943 (-)
jam2a LOC107751072,LOC107593737 coding upstream 769018 2224089 ~ 2235491 (-)
G260 NA non-coding downstream 1279 1441088 ~ 1441512 (-)
G247 NA non-coding downstream 96002 1344298 ~ 1346789 (-)
G244 NA non-coding downstream 157982 1282838 ~ 1284809 (-)
LOC122347488 NA non-coding downstream 179588 1256189 ~ 1263203 (-)
G231 NA non-coding downstream 468822 973746 ~ 973969 (-)
G297 NA non-coding upstream 111967 1567038 ~ 1567532 (-)
G303 LOC107698893,LOC107555241,LOC107751081,LOC107653672,LOC107571885 non-coding upstream 125672 1580743 ~ 1582087 (-)
G304 NA non-coding upstream 128820 1583891 ~ 1584684 (-)
G347 NA non-coding upstream 328124 1783195 ~ 1784512 (-)
G358 NA non-coding upstream 411569 1866640 ~ 1867365 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 211144 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 694427 738137 ~ 748364 (-)
G67 NA other downstream 1006666 435808 ~ 436125 (-)
G20 NA other downstream 1255706 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 136998 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1233694 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1681437 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2552769 4007840 ~ 4014287 (-)
G820 NA other upstream 2843239 4298310 ~ 4299193 (-)

Expression


Co-expression Network