ptgfrnb (LOC107730397,LOC107555256,LOC107653676,LOC107559799,LOC107677843,LOC107746979,LOC107717917)


Basic Information

Item Value
gene id ptgfrnb
gene name LOC107730397,LOC107555256,LOC107653676,LOC107559799,LOC107677843,LOC107746979,LOC107717917
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1277500 ~ 1315538 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246720.1
tgacgCAGGGTGCGTGACGTCGCTCCGGTCTCTCGCAGGGAATCCCGCTTCACTTCCGTCACTCGGTAGTTTCGGTAGTTGAACCTCGGCGAGCGCGAGTCAATCACGCGTCCGTCACTCGTCTCCCGCTCGCGCGCACACGGAGCGCGTGACGTCACCGCGGCGAGGGGCTCCGGTCCTCAGGTGTATCCCGGTCCCGTCCGTCTCTCCGCTCGGTCTTCGGCTCGTCCCGGGAGTAACGCGGCGGACCGCTCGTCTCCGGCGACATGGGAAAGACGCTCGCGCCGCTCGTGCTGTGCGCCGCCGTCGcTCTGTGCCACAGTAGGTCTGTGACGGTGTCCAGGGGCCCCCTGCTCCGGGTCGAGGGCCAGCCGCTGTCTGTTCGCTGCGATGTGTCGGAGTATGAGGGCCCGAGGGAGCAGGACTTCGAATGGACAGTGACGCGAGGGAAAGAATCCATCAAAGTGATCTCCACGTTTGATGATCGTTTCACAGACCGCTCTCTGCTGGAGCGCACGCGGAGCGGAGACGTCAGTCTGTCACGGCTAGCGGACAGCGCCGTCGAGCTGAGAATCCGGGAGGCTCAAGTCAGCGACAGCGCCACCTACCGCTGCAGTACCCCGAGCACCGACTCGGTCATCAGCGGGAACTATAACGCCGACGTCCAGCTGCAAGTTGTTCCCAACAGCCTGATTGTGGCTCCCGATGCCCCAAACCCCGTGCTTCGTGAAGGTGGATCCGTCAGACTCCTCTGCAACGTTTCCCGTAACTTCATGGAGGGAATTTACCTGTCTCTCACCTGGTCGGTGAAGAAGGCCTCGTCGCTGCTCGAGGACCTGCTGACCTTCGGCCCAGATTTGGGCGTGACGGTCGGCGACGGCTACACGCCGCGCTACACAGATGGCGGGATGCGGCTCGAAATGGGAAACGGCGTCTCGCACAGTCTGGTGCTCTCCGGAGCGACGCCGGCCGATCAGGGCATGTACGTGTGCACGGCCAGACTGTGGACGAGAGAGCAGGGAGCCTGGAACCGCGTTCAGGAGAAGACCGTGGAGATGGGAGAAGTGTCTGTCACCCCTGCGGCGAGCTCCCTCGGCGTCCAGGTTCAGGACGACAGCACGCTGTCCGCCGGAGAGACGCTGCTCCTCACCTGCTCGGTCTCTGCCGACGCCTCGGTGGACCTGGAGGTGTCGTGGCTGATGAACGGCTCGCGACTTCTGGCCCGTCTGAGTCGAGACGGCGTGCTGACGAACGCCTCTGACGCGGTGGACGCCCGGCGGCTGGGAAAGTGGGATTTCCAGCTCAAGGTCCACGGCGTGGAGCTGTCTGACGCGGGACTCTACGCATGCAAAGCCGGTGCTTGGGTTCAGCGCGATGCCGGACGATGGTACCGGGCCGCGGAGAAGACTTCGGACCCCGTGCGCGTTCACGTTATTAAGCTGAatcCGAACTACACCGTTGTTCTGAGCTCATCCGCGAACGCAAAGTTCCCCGGAGACCCGACAGAGCTGGAATGTAAAGCTGTGAACGTGTCGAACCTCCGCGGCGGGCGGCTGGGAGTGTCGTGGCTGTACCGAGGCGTTCAGGCCGGCGACGTCCCGGGGTCTGCTCACGCCATCGCCTCGCTGGACGAGAACGGGAACCTGGTGCCGGGCAAGACGTACAAGAGCCGCGTGGAGGCGGGGCTTGTTACGGTGACCCGTACGGAACCTTCTGCGTTCAGGCTCCGCCTCCTTCACACGAGGGACGCCGACTCCGGGGAATACACGTGCGCTGTGAGCGCATGGGTGCCGTCACGACACGGGAACTGGAAAAGGGTCGCAGAGCACGTGACCCCAGCGCTGAAAGTCGGCTTTGCTAACAAGCGTCCTGTTCTGAATGTCGCGGCACGGCGTCTCCGTGAAGCTTCGGCAGCCGGCTCCACGTTCGAGATGAGCTGCCACGCTGTTCAGGTCCAGCACCTCCCGCCCGGAGCCGCCGTGTCCATCCTGGTCTGGTCCGAGAAGAGCGTGGGGTCGCCCGGACGCAAACTGGCCTCTCTGGACCCGGAGATGGTCCTGCAGCAGGACGACCGGGACGTGGCGCTGGTGAAGAGCGGGAAGAACGAGTTTCGGTTCAGGATCCAGGCGGTGCAGGTGACCGATCGCGGCTTCTACTGGTGTGAGATGAAGGCCTGGACGAGGCAGCCCGGGGAGGACTGGGTGGAGACGGCCAAGGGAGAGTCCAACAAGGTTCAGATCGATTTCATACACAAAGGTCCAACGTTTGATGTGTCCATCAGCTCGGACGCAGCGAGTGTGTTCCCGTGGGAAACGGTGAAGATGGAGTGTGACGTCGGCGTCAGCGGCACGTCTCCGACTGCAGACGATGTAGCGTATGAGATGAAGTGGTTTCTGAGTCGTCTGAGGGGCTCGAACAGCCCGTCTCTGTTGGCCGGTATGGACCGCTGGGGTGTTGTGAAGAAGGCTCCTCGCAACGACAGCAGCGACTGCAGCCTGGAGCGCCTGGGACCCCGAAGATTCTCCCTGAACGTCCACAGCACGCAGGACAGCGACGCGGGCGACTATCACTGCACCGCTACGCCCTGGATCCGCTCGACCGCCACCGGGCTCTGGAGCAAAGCGCCCGAGGTCTCCTCGCAGAGAGTCTTCCTCAATGTGAAGTTTGCACTGTGGGACTCAATGAAGCTGCCCTTGCTGTACGGTGTCTGTGCTTCGGTGACCGTAGGCGTCGTTTCTCTCGTCCTGGGGCTGGTCTGTGCTCACTGCTGCTGTAAAACCACTACACCTACTCCGCGCTCTCGCAACAAACTCATGGAGCTGGAGATGGATTGACAAAGACAGTACAGTTGTCCCCTGCCGAACTGGACGGCGTGGTGACAGCTGATGAACGCTGGGACGTTATGCACCACCTGGAAGGAGAAACTACAACctcagaggaaaaaaactaCTGAATCAGAGTCAACCACTCCAAAATTGCACTAAACACTAAACTCTTATATCAGCTGGGCGCACGCTTTGTTGGATTTGTGAACGTTTCGTCGTTGAAACAAGATGAGATACCTGACGAGATCCTAGCAGGATTTAACGCATTGAAGGATTACATTACTCTACATCAAGCTCCAAAGAGACCGTCTGCTTCCAGATCAGGGTTTATAGACACTCGTTTCTACCGTCATTCTTCTGAGTTTGGTGCTACTCACTTTTTGCAAGACATGGGAGGAGCTGAACCCATGCCGCAGTGTGCAAGATGACATTTTATCTGTGATTCTGTGCTGTAATGTATGTACCCTTCGGTTTTGTCCTCCAACCCATCCAGAATTTACCAGCTCTGACCAACCCACCTTTCTAAAAGCTAACTAGTCAACCGTTATCCTGCCATGGGCGGTCACACTAGATATGAATAGGTGAtgaacaaaatagttttttgaatAAGtagtatttttctaaataaataattaatatctaATGTTAAAACGTATAACCTCCTATTTCCGATGACAGCGCAGCACTGGACTAACACGTCTGTTTAGATGGCTATCAACAAGCTAGCAGTAGCCCAgaacaaccaatcagaacgtCAAAACAATTCAACTGTTTACAAACATCCTAGGAATTGATAAGCAATTCTGTAgcaataactttaaaaatgtaaccgCTAGCAGCTGTGGCCTAATGGTTAGTGAGTCTGAAGGTTACGGGTTTGAGTCTCAGGTGTGGATAAGCCTCAGTACCACGACTAAGGTGagacccttgagcaaggcacgggggctgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcactactgtgtgtgtgtttgtgcaaattGTGAGTATGGGTCGCCACATGCCACTTGATTTCACCTtctaagaaacattttttaccGTCATAGCAACCAACCAAAGTACAGTCACAGTTGCCTAGAAACAGTCAAGCAACCCCTGAAAGCACCATTAGAAGGACTGGAACATCTTGGAAACCACTCAACCACCTAAAACGCTAAAGCCGTTGCATAGatacaccctggcaaccacctaaAGAGATATGTTGTGGCAAAGACCAAGAGCATCCTAGCAACTACACAGAAACACTATAGCAAcaacctaaaacacacacacatcaagagaatcctagcaactgcatagaaacGCCCTAGCAACTAGCTAAAACCTCTTTAGCCCAAATCAGATTTTGTGCATATCTGGATAAAATCCgatctaaaacacaaacaccacaagcatcctagcaaccacatagcaagcACCCTAGGAAGTATACCACGAGCATTCCTAGCAAATGCGTAAAACCCCTTAGCAACTACCTACAACAATAAGTCGAAAGCATCCTATTAACTGCATAGAAACACCCTGGCACCTACCTAAAATACTAACAAACACCAAGAGCATTCTAGAAACAGTCTAGAAATCAATTTGAACATCTTAGCAAGCATCCAAAACACTGTGGCAAGttagcaactgcatagaaacACTCTTGCACCTATCTGCAACAATCTAATGTATCTAGATCCAGAGCTCcgtagcaactgcatagcaactaCCTAAACACAGACACCAaaagcaccctagcaacagtTCAGAAACATTGCAACCACCCACATCACCTTGCAACTGCATAGAAACACCACTGCAACTAATCTACTGTAGCACAAAAGACCAAGAAGCAGCTGAGAAACTACTTTGAACATtgtagcaaccgcatagcatagcaactgcatagaaacACCCTGGCAACGACAGCATTCTAGGAACCAGGACAATCCTAGCGAATGCAAAGAAACACCGTAGCCACTATCCTTAACAATCTACTGCAGCATAGACCAAGAACGTCCTGTAAACAACCTAGAAACCACTTTGAACATCCTACCGACAACAATGGACAGTAAACAAATCAACAGcatcctagcaactgcatagaaacGGCCTAGCAGCtacctaaaacacaaacaaataccaAGAGCATCCTAGCAACAGCTTAGAAACCACTTGCTACGTAGCAATCACATCATAGCAACTGCCTAGATACGTCCTAGCACCACTTAGAACATCGTAAGCACCCAGAACGCTGTAGAAAGCACTTTTTTATCAAGGTGCAAGATACTTGTGAACATGCGGTCATGTGAAAATGCCAAGAGAGGTGAATCGGTGGCATTTATGTGGTGTGTTTTGCAAACCCACCCAATTGAACTTTGGTAAAGAGAGAGCGATGAAAGTCTCAATCACGCGAGTATGAATGAAAGCTAGTTTCTAGTGTGGCCGCCCCTCGAGCTGATGAGCTATAGACTCATTGGCTAGTCTGTCACACGGAGGTCAGGGTTTGATTAGGTTGAATCTGTGCCTTGGGCCCGGTCTTGAAGCTCCGCTAACAGCTCTGCACCGCCGCATCACGGAGCAAGTAGAGCTGAAACTCAATGCTGTGCATTAGGGCCAAAAGACCCCCAGAACAAGCACTTTCCTCTTCAGCGACGCCTCAAGGGCATCGGCCGaccttttttcctctttgtctGCATCTGAGGGTCTTTGTCTCCACTCCTGAAGCTATCggctaaaaaaaaacgaaactcTGTGAATCTTCGTGGAAGACGGCGGATATTCAGTGTTTGTGCTCGGCAAACGTTCCGGCGTGGATTTGTTTTCAACCTCTTTTTCTCAGTATCAAACTGCCATTAATTCAGACCGTTTAAACTTCATTTTCTAGATCTTTTCAAGTCTTGAGAGTGCTTCTGTATTTGGGTTTTGTAACGTTTATACTTTGTATGAAAATTAAGGTTGAAGTTCGAAACTGTTCTTTTAGCGTCGTTCGTTGATGTCAAACTGAATAGCAGTtggtcttttgtttttttacattcgCGTACTGAACTATGATTGGTGTAAGATTGTGTTTTTGACTGGGTTGTTGATCGAAAAACTGAGTTATGTGGTTAACCAAGCGATTAAAAAGTGGTCACACTAGATAATAAGCATGCAGAATTATTACAGAACTATTTTAGAAGGAATATGAGCAACAGGATGTGATGTCATGGtgcagtgcttttgtttttaaaaaaataaattataaatgatattaataaattaaaaaatgttataataa

Function

NR:

description
PREDICTED: prostaglandin F2 receptor negative regulator-like

GO: NA

KEGG:

id description
K06729 PTGFRN, CD315; prostaglandin F2 receptor negative regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246720.1 True 6161 mRNA 0.52 9 1277500 1315538

Neighbor

gene id symbol gene type direction distance location
slc5a3a slc5a3a,LOC107730390,LOC107677845,LOC107555245,LOC107559792,LOC107746980,LOC107653669 coding downstream 7575 1264771 ~ 1269925 (-)
rap2ab rap2ab,rap2a,LOC105911819,LOC106582448,LOC106512668,LOC101166017,LOC105933629,LOC103391592,LOC105907999 coding downstream 112565 1148672 ~ 1164935 (-)
kpnb3 kpnb3,ipo5,LOC107677849,LOC107653674 coding downstream 140435 1117841 ~ 1137065 (-)
LOC122353706 NA coding downstream 147863 1129499 ~ 1129637 (-)
farp1 farp1,LOC107730395,LOC107677850,LOC107653673,LOC107560794,LOC107744955,LOC107559785 coding downstream 161065 1050746 ~ 1116435 (-)
si:ch211-132g1.1 NA coding upstream 3252 1318790 ~ 1324793 (-)
si:ch211-132g1.6 NA coding upstream 16145 1331683 ~ 1333824 (-)
LOC122350472 atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679 coding upstream 31956 1347494 ~ 1353796 (-)
LOC122350536 atp1a1a.2,atp1a1a.4,atp1a1a.3,LOC107698906,LOC107555259,LOC107717913,LOC107555265,LOC107653679 coding upstream 49004 1364542 ~ 1370987 (-)
atp1a1a.1 atp1a1a.1,LOC107718011,LOC107555257,LOC107698904,LOC107653678,LOC107717912,LOC107568774 coding upstream 77391 1392929 ~ 1402824 (-)
LOC122347488 NA non-coding downstream 14297 1256189 ~ 1263203 (-)
G231 NA non-coding downstream 303531 973746 ~ 973969 (-)
G125 NA non-coding downstream 386913 890244 ~ 890587 (-)
G99 NA non-coding downstream 553464 723745 ~ 724036 (-)
G73 NA non-coding downstream 828860 448328 ~ 448640 (-)
G247 NA non-coding upstream 28760 1344298 ~ 1346789 (-)
G260 NA non-coding upstream 125550 1441088 ~ 1441512 (-)
G297 NA non-coding upstream 251500 1567038 ~ 1567532 (-)
G303 LOC107698893,LOC107555241,LOC107751081,LOC107653672,LOC107571885 non-coding upstream 265205 1580743 ~ 1582087 (-)
G304 NA non-coding upstream 268353 1583891 ~ 1584684 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 45853 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 529136 738137 ~ 748364 (-)
G67 NA other downstream 841375 435808 ~ 436125 (-)
G20 NA other downstream 1090415 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 276531 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1373227 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1820970 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2692302 4007840 ~ 4014287 (-)
G820 NA other upstream 2982772 4298310 ~ 4299193 (-)

Expression


Co-expression Network