f7 (f7,LOC107747062,LOC107654615,LOC107551097,LOC107570083)


Basic Information

Item Value
gene id f7
gene name f7,LOC107747062,LOC107654615,LOC107551097,LOC107570083
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2536351 ~ 2540415 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246732.1
ACCTCAGACCTTTGAACCTGCAGCATAAGATACGAACAGAAGCGCTGCTCAACATGAGTCTCCTGTCAGGGCTTTACGTCCTCTTGGGTCTTTACTGCTGTCATTCTGCTACAGtGTTTGTGGGGAAGGACGAGGCCCACGGGGTTTTGATCCGGACCAAGCGGGCAAACTCAGGCTGGTTTGAGGAGCTGAAGATGGGCAATCTGGAGAGAGAGTGTCTGGAGGAGAAGTGTTCGTATGAGGAGGCGCGGGAGGTGTTTGAACACACCGAGGCCACCAATGAGTTCTGGAAGATCTACGATGTTAAAGATCACTGTGAATCCAATCCGTGTGAGAATGAAGGACTCTGCACGACCCAGAACTCAGAATCCTACACCTGTCTGTGTTCGCCGGGCTTCAGCGGACGCAACTGTGAGCAGGCGATTAAAGACACCCCTGACTCCTGTCTGCATGATAACGGCGGCTGTGAGCACTTCTGCGTGGAGGAGGACGCTCagagaaactgttcctgtgccGACGGATATTTCTTGGGGTCAGATGGTCAGAAGTGCTTGACCCACGAGACTTTTCCGTGTGGGAAGGTTCCTCTTCTTCAGGGTGGAGGAGCTGCGACCAAACCAGACGATGTGAGATCTCGTATCGTTGGTGGAGCAGAATGTCCTAAAGGTCACTGTCCATGGCAGgtGCTGCTGAAGTACGGTCAGAAGGGTTTCTGTGGAGGTGTGATCTATAAACCCACCTGGGTCCTCACTGCGGCCCACTGTTTGGAAAAACTCAATGTCAGGTTTCTGAAGATAGTCGCAGGTGAGCATGACATCGAGGTGGAGGAAGGCACAGAGCAGGTGATCCAGGTGGAGCAGATGCTCATGCACCCGAGCTACGTGCCCGAGACCTCAGACAACGACATCGCCCTGCTGCGTCTGCGCACACCCGTCGTCTACAGCTCCTACGCCGTCCCCGTCTGCCTGCCGCTGCGGGAAACGGCCGAGCGCGAGCTGTGGGCCATCAGCAAGCACACGGTCAGCGGCTGGGGCAAACGCAGCGAGGACGGACCCACGTCACGCTTACTGCGCCGCCTGCAGGTGCCCCGCATCCGAACGCAGGAGTGCATCGAGAGCAGCAACGTCACGCTCACCAGAAACATGTTCTGCGCCGGATACATCGAGGGCAAGCAGGACTCGTGTAAAGGGGACAGCGGAGGGCCGCTGGTGACCCGCTACAGGGACACCACCTTCCTGCTGGGCATCGTGAGCTGGGGCAAAGGCTGCGCCCGACCGGGCTCCTACGGCATCTACACCCGCGTCTCCAACTACCTGCAGTGGATCCACCAACACACGGACAACTCTACAGCTGCAGCACCATGAAGCGTGAACGCACCGCGGAGCTACTATTTATGCTTGATCGTGTCTGATTTTTGTTcgatattttaattcattcacaaataaatcattgaGTAGTAAACCA

Function

symbol description
f7 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Acts upstream of or within blood coagulation, fibrin clot formation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in blood plasma; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including acute pancreatitis; artery disease (multiple); diabetes mellitus (multiple); factor VII deficiency; and obesity. Orthologous to human F7 (coagulation factor VII).

NR:

description
PREDICTED: coagulation factor VII-like

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01320 F7; coagulation factor VII

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246732.1 True 1464 mRNA 0.56 8 2536351 2540415

Neighbor

gene id symbol gene type direction distance location
f7i f7,LOC107747061,LOC107654598 coding downstream 1698 2530896 ~ 2534653 (-)
f10 LOC107654567,LOC107751061,LOC107694470,LOC107570070 coding downstream 6863 2524609 ~ 2529488 (-)
prozb NA coding downstream 13033 2518723 ~ 2523318 (-)
cul4a cul4a,LOC102780633 coding downstream 25021 2499882 ~ 2511330 (-)
lamp1a LOC107694471,LOC107751063,LOC107571985,LOC107574978 coding downstream 37660 2489469 ~ 2498691 (-)
f7l LOC107751062,LOC107694469,LOC107570084,LOC107551096,LOC107747071 coding upstream 73 2540488 ~ 2544986 (-)
LOC122351178 LOC107739159,LOC107694465,LOC107570071,LOC107751098,LOC108429813,LOC108258592 coding upstream 19115 2559530 ~ 2560339 (-)
pou2f1a pou2f1,LOC107751057,LOC107662118,LOC107654677 coding upstream 34327 2574742 ~ 2588258 (-)
dusp27 dusp27 coding upstream 49232 2589647 ~ 2597889 (-)
LOC122353060 LOC107570085,LOC107751087,LOC107711130,LOC107576869 coding upstream 63989 2604404 ~ 2628263 (-)
G647 NA non-coding downstream 20176 2515654 ~ 2516175 (-)
G640 NA non-coding downstream 25662 2474322 ~ 2510689 (-)
G617 NA non-coding downstream 156410 2378431 ~ 2379941 (-)
G563 NA non-coding downstream 164600 2369634 ~ 2371751 (-)
G614 NA non-coding downstream 176019 2349200 ~ 2360332 (-)
LOC122351916 NA non-coding upstream 8509 2548924 ~ 2552261 (-)
G638 NA non-coding upstream 15828 2556243 ~ 2558864 (-)
G653 creg1,LOC107751059,LOC107739160,LOC107654633,LOC107551109,LOC107694464 non-coding upstream 20940 2561355 ~ 2561966 (-)
G652 creg1,LOC107694464,LOC107751059,LOC107551109,LOC107739160,LOC107654633 non-coding upstream 21776 2562191 ~ 2564410 (-)
G666 NA non-coding upstream 112302 2652717 ~ 2654832 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 931367 1592069 ~ 1604984 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 1304704 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 1787987 738137 ~ 748364 (-)
G67 NA other downstream 2100226 435808 ~ 436125 (-)
G20 NA other downstream 2349266 186420 ~ 187085 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 148350 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 596093 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 1467425 4007840 ~ 4014287 (-)
G820 NA other upstream 1757895 4298310 ~ 4299193 (-)
mdh1b mdh1b other upstream 2415704 4956119 ~ 4960210 (-)

Expression


Co-expression Network