LOC122350472 (atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679)


Basic Information

Item Value
gene id LOC122350472
gene name atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1347494 ~ 1353796 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247012.1
CTCCTCGTTACACAGGTGAGATGGCAGGGTATAAATCTGTCAACCTGGTTTGGACACACAGGGACTTCTGTCTCCAACTGCAAGACCAGACACCTGAAATCAGTGGATTTTGGGTGGACATCAGCACGGAAAATGGGGCTCGGGACAGGGAATGATACGAAGTACGAAGTGGCAGCAACGTCAGAAGATGGAGTCAAAAAGCccaaaaaagggaaaaagagcAAAAAGGACATGGATGAACTGAAGAAAGAAGTGGAACTGGAAGATCACAAGTTGACCTTGGACGAACTTAACCGAAAATATGGCACCGATCTGACCAAAGGTTTGACCAATTTCCGAGCAAAGGAAATCTTAGCCCGTGATGGACCAAATGCCTTGACTCCACCTGTTACGACTCCAGAATGGGTGAAGTTCTGCAGACAGCTGTTTGGTGGATTCCAGACACTGCTGTGGATTGGTGCATTTCTTTGCTTCTTTGCATATTCGATCCAGGCTGCCTCTGAAGAAGAACCGGCGAATGACAATCTGTATCTGGGACTTGTGCTTGCTTTTGTTGTCACAGTCAATGGATGTTTCTCATACTATCAAGAGGCTAAGAGCTCTAGGATCATGGATTCTTTTAAGAACCTCGTTCCTCAGAAAGCCCTGGTTATACGTGATGCAGAGAAACAAATCATTGATGCTGAGGATGTAGTTGTAGGTGATCTTGTGGAGGTCAAAAGTGGAGACAGAATCCCAGCTGATATTCGTGTCATTTCTGCACAAGGCTGCAAGGTGGACAACTCTTCCCTCACTGGAGAGTCTGAGCCCCAGAGTCGTACTCCTGACTTCTCTAGTGAAAACCCACTGGAGACAagaaacattgcatttttttccacCAATTGTGTTGACGGTACTGCCAGAGGGATTGTCATTAACACCGGTGACCGTACTGTCATGGGTCGTATCGCCACTCTTGCCTCAAGTCTGGAAGGCGGACAAACACCAATTGCTAAAGAGATCGAGCACTTCATCCACATCATCACTGGTGTAGCTGTCTTCCTGGGTTTGACCTTCTTAATTCTCTCTCTGATTCTTGGCTACACTTGGTTGGAAGGAGTCATCTTCCTTATTGGGATCATTGTCGCTAATGTACCTGAAGGTCTCCCTGCCACTGTAACCGTGTGTCTGACTCTGACTGCAAAACGTATGGCGAAGAAGAACTGCCTGGTGAAGAATCTGGAAGCCGTGGAGACTCTTGGCTCGACCACCACCATCTGCTCTGACAAGACTGGAACTTTGACCCAGAACCGAATGACCGTCGCTCACATGTGGTTTGACAGCCATATTCATATAGCAGACACCACAGAGAACCAAACTGGAACCTCATTTGACAAGAGCTCGGCTACTTGGTCTGCTCTTGCACGTGTTGCTGGACTTTGCAATCGTGCCGTCTTCCAATCGAATCAGAACAATCTTCCGGTCCTTAAGCGAGAAACAGCTGGCGACGCGTCAGAGTCCGCCCTGCTGAAGTGTATTGAGTTGTGCTGCGGTTCAGTCGCTGAAATGAGAGAGAAGTATCCAAAAGTTGCTGAGATTCCTTTTAACTCCACCAACAAGTATCAGCTCTCAATCCACAAGAATCCCAATCCCTCAGAGTCTAAGCACCTGCTGGTGATAAAGGGAGCCCCAGAGAGAATCCTGGATCGATGCTCTACTATTCTGATTCAAGGAAAAGAGCAGCCTTTGGACGATGAAATGAAAGATTCGTTCCAAAACGCTTATTTGGAGCTTGGAGGTCTTGGAGAAAGAGTGTTGGGTTTTTGCCACTTTAGCCTCCCCGATGACCAGTTTCCTGAGGGTTTTGCATTTGATACTGAAGAAATGAACTTTCCAACTGAGAACCTCTGTTTTGTCGGCCTCATGTCCATGATTGATCCTCCTCGTGCAGCTGTACCAGACGCTGTGGCCAAATGTCGGAGTGCTGGAATCAAGGTTATTATGGTTACTGGTGACCATCCAATCACAGCTAAAGCTATTGCAAAGGGTGTTGGCATCATCTCTGAAGGCAATGAGACCATTGATGATATTGCAGCCCGGCTGAAAATCCCTGTTGGAGAGGTCAATCCAAGAGATGCTAAGGCCTGTGTGGTTCATGGTGGTGAACTGAAGAATATGACCCCAGAACAGCTGGATGAAATCCTCCAGTATCATACAGAAATTGTGTTTGCCAGAACTTCTCCACAACAAAAGCTGATCATCGTGGAAGGTTGTCAGCGACAGGGTGCCATTGTAGCCGTAACTGGTGATGGTGTCAATGATTCTCCTGCTCTAAAGAAGGCTGATATTGGTGTGGCTATGGGTATCGCTGGATCTGACGTATCTAAACAGGCTGCTGACATGATCCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGACGTCTGATCTTTGACAACTTGAAGAAGTCCATTGCCTACACGCTGACTAGTAAGATCCCTGAAATGTCACCCTTCCTCTTTTTTGTCCTTGTTGGCATTCCTCTACCTTTGGGCACGGTCACCATTCTCTGCATTGACCTGGGCACTGACATGGTTCCTGCCATCTCACTGGCCTACGAAACTCCTGAAAGCGACATCATGAAGAGACAACCCAGAAATGCTGAAACGGATAGGCTGGTGAATGAGAGGCTTATCAGTATGAGCTACGGTCAAATTGGCATGATGCAAGCAGTTGGTGGGTTCTTTACCTACTTCGTAATTCTAGCTGAGAATGGATTCTTGCCCAAGGATTTGGTGGGAATTCGAGTTGGGTGGGAAGACAGATACGTCAGTGACCTGGAAGACAGTTATGGCCAGCAATGGACGTATGAGCGCAGAAAAATCGTGGAGTACACATGCCACACTGCCTTCTTTACCAGTATTGTGATTGTGCAATGGACTGATCTGCTCATCTGCAAGACCAGGAGGCTTTCCATCTTTCAGCAGGGAATGAAgAATAGAGTCCTCACCTTCGGTCTGTGTGTGGAAACTGCTCTGGCAGCATTTTTATCCTACTGCCCAGGCATGGATGTTGCTGTCCGAATGTATCCAATGAAacCACTGTGGTGGTTCTGTGCCATGCCATATTCACTGCTCATTTTCATCTATGATGAAGTTAGAAAATACATTCTTAGGCAGAACCCAGGAGGCTGGGTGGAACTAGAAACATACTACTAAAACGACAAATTTCTATTGGGGATGTGCAAGGAGACAttcattttgatgttttcaaaatgatacAAAGTCAATAAATATGTCCAATTAATTCTG

Function

symbol description
atp1a1a.3 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neuromast mantle cell; neuromast support cell; and pronephric duct. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1a.4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1-like

GO:

id name namespace
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247012.1 True 3303 mRNA 0.47 22 1347494 1353796

Neighbor

gene id symbol gene type direction distance location
si:ch211-132g1.6 NA coding downstream 13670 1331683 ~ 1333824 (-)
si:ch211-132g1.1 NA coding downstream 22701 1318790 ~ 1324793 (-)
ptgfrnb LOC107730397,LOC107555256,LOC107653676,LOC107559799,LOC107677843,LOC107746979,LOC107717917 coding downstream 31956 1277500 ~ 1315538 (-)
slc5a3a slc5a3a,LOC107730390,LOC107677845,LOC107555245,LOC107559792,LOC107746980,LOC107653669 coding downstream 77569 1264771 ~ 1269925 (-)
rap2ab rap2ab,rap2a,LOC105911819,LOC106582448,LOC106512668,LOC101166017,LOC105933629,LOC103391592,LOC105907999 coding downstream 182559 1148672 ~ 1164935 (-)
LOC122350536 atp1a1a.2,atp1a1a.4,atp1a1a.3,LOC107698906,LOC107555259,LOC107717913,LOC107555265,LOC107653679 coding upstream 10746 1364542 ~ 1370987 (-)
atp1a1a.1 atp1a1a.1,LOC107718011,LOC107555257,LOC107698904,LOC107653678,LOC107717912,LOC107568774 coding upstream 39133 1392929 ~ 1402824 (-)
LOC122350642 atp1a1a.4,LOC107717913,LOC107653679,LOC107555265,LOC108429865 coding upstream 50782 1404578 ~ 1412946 (-)
rcan1b rcan1b,LOC107555267,LOC107698909,LOC107568778,LOC107653682,LOC107718018,LOC107709340 coding upstream 88995 1442791 ~ 1455071 (-)
urp2 LOC107698908 coding upstream 111641 1465437 ~ 1469101 (-)
G247 NA non-coding downstream 705 1344298 ~ 1346789 (-)
G244 NA non-coding downstream 62685 1282838 ~ 1284809 (-)
LOC122347488 NA non-coding downstream 84291 1256189 ~ 1263203 (-)
G231 NA non-coding downstream 373525 973746 ~ 973969 (-)
G125 NA non-coding downstream 456907 890244 ~ 890587 (-)
G260 NA non-coding upstream 87292 1441088 ~ 1441512 (-)
G297 NA non-coding upstream 213242 1567038 ~ 1567532 (-)
G303 LOC107698893,LOC107555241,LOC107751081,LOC107653672,LOC107571885 non-coding upstream 226947 1580743 ~ 1582087 (-)
G304 NA non-coding upstream 230095 1583891 ~ 1584684 (-)
G347 NA non-coding upstream 429399 1783195 ~ 1784512 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 115847 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 599130 738137 ~ 748364 (-)
G67 NA other downstream 911369 435808 ~ 436125 (-)
G20 NA other downstream 1160409 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 238273 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1334969 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1782712 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2654044 4007840 ~ 4014287 (-)
G820 NA other upstream 2944514 4298310 ~ 4299193 (-)

Expression


Co-expression Network