LOC122350536 (atp1a1a.2,atp1a1a.4,atp1a1a.3,LOC107698906,LOC107555259,LOC107717913,LOC107555265,LOC107653679)


Basic Information

Item Value
gene id LOC122350536
gene name atp1a1a.2,atp1a1a.4,atp1a1a.3,LOC107698906,LOC107555259,LOC107717913,LOC107555265,LOC107653679
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1364542 ~ 1370987 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247143.1
GTTGgcagaatatatattttgtgaactTGTACCGGTCACACAGGCACTTGTGTCTCCAGAGAGGCCGACTCGACTTCTGACATCTAAGACAGCAGGTTTTAGGGTTGCAATAAACTGGGAAGATGGGGCTCGGCACGGGGAATGATAACTACACGTTGACGGCAACTTCTGAAGATGAAatcaaaaaacccaaaaagggtaaaaaaaagaagaaggatGTGAACGAACTGAAGAAAGAAGTGGAGCTGGACGACCACAAGCTGACATTGGATGAACTCTCTCGCAAATACGGCACTGATTTAAATAAGGGCTTGTCTTCATCCCGTGCAAAAGAGATCTTAGAACGTGATGGACCTAATGCACTGACACCGCCTCCTACGACTCCAGAATGGGTGAAGTTCTGCACACAGCTCTTTGGTGGATTCCAGACACTGCTGTGGTTTGGTGCGTTTCTTTGTTTCACTGCATATGGAATCCAGGCTGCCTCAGAAGAAGAACCAGCGAACGACAATCTATACCTGGGACTCGTGCTTGCCTTTGTTGTCATAGTCAACGGATGGTTCTCATACTATCAGGAATCCAAGAGCTCTAAGATCATGGAATCTTTTAGGAACCTTGTTCCTCAGCAAGCATTAGTTGTGCGTAACGGAGAGAAAAAGGTCATTAATGCGGAGGAGGTAGTCGCTGGGGATCTTGTGGAGGTCAAGGGTGGTGACAGAATCCCAGCTGATCTCCGTATCATCTCTGCACATGGATGCAAGgtGGACAACTCTTCCCTCACCGGTGAATCTGAGCCCCAGACTCGTACTCCTGACTTCTCCCATGAAAACCCCTTGGAAACCAGAAACATTGCATTCTTCTCCACCAACTGTGTTGAAGGTACTGGAAGAGGGATTGTCATCAGCACCGGTGACCATACCGTCATGGGTCGTATTGCATCTCTTGCCTCCAGCCTGGATGGTGGAAAAACACCAATTGCTAAAGAGATCGAGCACTTCATCCACATCATCTCTGGTGTAGCCGTCTTCCTGGGTGTTGCCTTCCTGATCTTGTCCTTGATTCTTGGATACGGGTGGTTGGAAGCTGTTGTTTTCCTTATTGGTATCATTGTCGCTAATGTACCTGAAGGTCTCCCTGCCACTGTAACTGTGTGTCTGACTCTGACCGCCAAACGTATGGCGAAGAAGAACTGCCTGGTGAAGAATCTGGAAGCCGTGGAGACTCTTGGCTCGACCACCACCATCTGCTCTGACAAGACTGGAACTTTGACCCAGAACCGAATGACCGTCGCTCACATGTGGTTTGACAACCAGATTCATGAAGCGGACACCACAGAGAACCAGAGTGGAAACTCCTTTGAGAGGAGCTCTGCTACTTGGTCCACCCTCGCACGTATTGCTGGGCTTTGCAATCGTGCCGTTTTTCGTGCAGAACAAAGCCATCTCCCAATCCTTAGCCGAGACACAGCTGGCGATGCCTCAGAGTCTGCCCTGCTGAAGTGTATTGAGTTGTGTTGCGGTTCAGTCactgaaatgagagaaaagtaCACAAAGATTTGTGAGATACCTTTTAACTCCACCAATAAGTATCAGCTCTCAGTCCACAAGAATCCCAATCCCTCAGAGTCTAAGcacctgctggtgatgaagggaGCCCCAGAGAGAATCCTGGATCGATGCTCTACTATTTTGATTCAAGGAAAAGAGCAGCCTTTGGACGATGAAATGAAAGATTCATTCCAAAATGCCTACGTAGAACTCGGAGGTCTTGGAGAAAGAGTGCTGGGTTTCTGCCACTTTGGCCTCCCTGATGACCAGTTTCCTGAGGGTTTTGCCTTTGATACTGAAAATGTGAACTTTCCAACTGAGAACCTATGTTTTGTCGGCCTCATGTCCATGATCGATCCTCCTCGTGCAGCTGTACCAGACGCTGTGGCCAAATGTCGGAGTGCTGGAATCAAGGTTATCATGGTTACCGGTGACCATCCAATTACAGCTAAGGCTATTGCAAAGGGTGTTGGCATCATCTCTGAAGGCAATGAGACTGTGGAAGACATTGCTGCTCGTTTGAACGTTCCTATTGGAGAGGTCAATCCAAGAGACGCCAAGGCATGTGTGGTTCATGGTGGAGAACTGAAGAACATGAATGAAAGCCACCTGGATGAGATCCTCCAACACCATACAGAAATTGTGTTTGCCAGAACTTCTCCACAACAAAAGCTGATAATTGTGGAAGGCTGTCAGCGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGTGTCAATGATTCTCCTGCTCTGAAGAAGGCTGATATCGGTGTGGCTATGGGTATCGCTGGATCTGACGTATCTAAACAGGCTGCTGACATGATCCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGACGTCTGATCTTTGACAACTTGAAGAAGTCCATTGCCTACACACTGACTAGTAAGATCCCTGAGATGTCACCCTTCCTCATGTTTGTCCTTGTTGGTATTCCTCTACCTTTGGGCACGGTCACCATTCTCTGTATTGACCTGGGCACTGACCTGATTCCTGCTATCTCACTGGCCtatgaaaatgcagaaaatgacaTCATGAAGAGACAACCCAGAAATGCTCAAACAGATAGGCTGGTCAATGAGAGGCTCATCAGTATGGCCTACGGTCAAATCGgtatGATCCAAGCAGTTGCAGGGTTCTTCACCTACATTGTGGTTATGAGCGAGAACGGATTCTGGCCCAGTTATCTGCCAGGACTTCGAGTTGGTTGGGAAGACAGATCTATCAGTGACCTAGAAGATAGCTATGGTCAACAATGGACCTTTGAGGCCAGAAAGATAATAGAGTCCACGTGCCACACAGCGTTTTTCATCAGCATTGTAGTTGTGCAGTGGGGTGACCTGATCATTGTAAAGACCAGAAGAAATTCCATCGTACAGCAGGGAATGAAAAACAAAGTCCTCATCTTTGCCTTTTTTGAGGAAGCTGCTCTGGCAGCCTTCTTGTCCTACTGCCCAGGCATGGACGTTGCCGTCAGAATGTATCCTCTAAGACCATTGTGGTGGTTCACTGCAGTCCCATACTCACTTCTCATCTTCATCTACGATGAAGTTAGGAAATACCTTCTTCGACGGAATCCAGGagGATGGGTGGAAAAAGAAACATACTATTAAATCAAGACGACACTGTATTGCAAATTTATTTCCGAGACATTTTTCTcaattttcagcaaataaatgtgaaattttattaagctgaa
>XM_043247230.1
AAACAACTGGCATATGTTGTGTTTTGGATGCTGACGGGGAATGATAACTACACGTTGACGGCAACTTCTGAAGATGAAatcaaaaaacccaaaaagggtaaaaaaaagaagaaggatGTGAACGAACTGAAGAAAGAAGTGGAGCTGGACGACCACAAGCTGACATTGGATGAACTCTCTCGCAAATACGGCACTGATTTAAATAAGGGCTTGTCTTCATCCCGTGCAAAAGAGATCTTAGAACGTGATGGACCTAATGCACTGACACCGCCTCCTACGACTCCAGAATGGGTGAAGTTCTGCACACAGCTCTTTGGTGGATTCCAGACACTGCTGTGGTTTGGTGCGTTTCTTTGTTTCACTGCATATGGAATCCAGGCTGCCTCAGAAGAAGAACCAGCGAACGACAATCTATACCTGGGACTCGTGCTTGCCTTTGTTGTCATAGTCAACGGATGGTTCTCATACTATCAGGAATCCAAGAGCTCTAAGATCATGGAATCTTTTAGGAACCTTGTTCCTCAGCAAGCATTAGTTGTGCGTAACGGAGAGAAAAAGGTCATTAATGCGGAGGAGGTAGTCGCTGGGGATCTTGTGGAGGTCAAGGGTGGTGACAGAATCCCAGCTGATCTCCGTATCATCTCTGCACATGGATGCAAGgtGGACAACTCTTCCCTCACCGGTGAATCTGAGCCCCAGACTCGTACTCCTGACTTCTCCCATGAAAACCCCTTGGAAACCAGAAACATTGCATTCTTCTCCACCAACTGTGTTGAAGGTACTGGAAGAGGGATTGTCATCAGCACCGGTGACCATACCGTCATGGGTCGTATTGCATCTCTTGCCTCCAGCCTGGATGGTGGAAAAACACCAATTGCTAAAGAGATCGAGCACTTCATCCACATCATCTCTGGTGTAGCCGTCTTCCTGGGTGTTGCCTTCCTGATCTTGTCCTTGATTCTTGGATACGGGTGGTTGGAAGCTGTTGTTTTCCTTATTGGTATCATTGTCGCTAATGTACCTGAAGGTCTCCCTGCCACTGTAACTGTGTGTCTGACTCTGACCGCCAAACGTATGGCGAAGAAGAACTGCCTGGTGAAGAATCTGGAAGCCGTGGAGACTCTTGGCTCGACCACCACCATCTGCTCTGACAAGACTGGAACTTTGACCCAGAACCGAATGACCGTCGCTCACATGTGGTTTGACAACCAGATTCATGAAGCGGACACCACAGAGAACCAGAGTGGAAACTCCTTTGAGAGGAGCTCTGCTACTTGGTCCACCCTCGCACGTATTGCTGGGCTTTGCAATCGTGCCGTTTTTCGTGCAGAACAAAGCCATCTCCCAATCCTTAGCCGAGACACAGCTGGCGATGCCTCAGAGTCTGCCCTGCTGAAGTGTATTGAGTTGTGTTGCGGTTCAGTCactgaaatgagagaaaagtaCACAAAGATTTGTGAGATACCTTTTAACTCCACCAATAAGTATCAGCTCTCAGTCCACAAGAATCCCAATCCCTCAGAGTCTAAGcacctgctggtgatgaagggaGCCCCAGAGAGAATCCTGGATCGATGCTCTACTATTTTGATTCAAGGAAAAGAGCAGCCTTTGGACGATGAAATGAAAGATTCATTCCAAAATGCCTACGTAGAACTCGGAGGTCTTGGAGAAAGAGTGCTGGGTTTCTGCCACTTTGGCCTCCCTGATGACCAGTTTCCTGAGGGTTTTGCCTTTGATACTGAAAATGTGAACTTTCCAACTGAGAACCTATGTTTTGTCGGCCTCATGTCCATGATCGATCCTCCTCGTGCAGCTGTACCAGACGCTGTGGCCAAATGTCGGAGTGCTGGAATCAAGGTTATCATGGTTACCGGTGACCATCCAATTACAGCTAAGGCTATTGCAAAGGGTGTTGGCATCATCTCTGAAGGCAATGAGACTGTGGAAGACATTGCTGCTCGTTTGAACGTTCCTATTGGAGAGGTCAATCCAAGAGACGCCAAGGCATGTGTGGTTCATGGTGGAGAACTGAAGAACATGAATGAAAGCCACCTGGATGAGATCCTCCAACACCATACAGAAATTGTGTTTGCCAGAACTTCTCCACAACAAAAGCTGATAATTGTGGAAGGCTGTCAGCGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGTGTCAATGATTCTCCTGCTCTGAAGAAGGCTGATATCGGTGTGGCTATGGGTATCGCTGGATCTGACGTATCTAAACAGGCTGCTGACATGATCCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGACGTCTGATCTTTGACAACTTGAAGAAGTCCATTGCCTACACACTGACTAGTAAGATCCCTGAGATGTCACCCTTCCTCATGTTTGTCCTTGTTGGTATTCCTCTACCTTTGGGCACGGTCACCATTCTCTGTATTGACCTGGGCACTGACCTGATTCCTGCTATCTCACTGGCCtatgaaaatgcagaaaatgacaTCATGAAGAGACAACCCAGAAATGCTCAAACAGATAGGCTGGTCAATGAGAGGCTCATCAGTATGGCCTACGGTCAAATCGgtatGATCCAAGCAGTTGCAGGGTTCTTCACCTACATTGTGGTTATGAGCGAGAACGGATTCTGGCCCAGTTATCTGCCAGGACTTCGAGTTGGTTGGGAAGACAGATCTATCAGTGACCTAGAAGATAGCTATGGTCAACAATGGACCTTTGAGGCCAGAAAGATAATAGAGTCCACGTGCCACACAGCGTTTTTCATCAGCATTGTAGTTGTGCAGTGGGGTGACCTGATCATTGTAAAGACCAGAAGAAATTCCATCGTACAGCAGGGAATGAAAAACAAAGTCCTCATCTTTGCCTTTTTTGAGGAAGCTGCTCTGGCAGCCTTCTTGTCCTACTGCCCAGGCATGGACGTTGCCGTCAGAATGTATCCTCTAAGACCATTGTGGTGGTTCACTGCAGTCCCATACTCACTTCTCATCTTCATCTACGATGAAGTTAGGAAATACCTTCTTCGACGGAATCCAGGagGATGGGTGGAAAAAGAAACATACTATTAAATCAAGACGACACTGTATTGCAAATTTATTTCCGAGACATTTTTCTcaattttcagcaaataaatgtgaaattttattaagctgaa

Function

symbol description
atp1a1a.3 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neuromast mantle cell; neuromast support cell; and pronephric duct. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1a.4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1a.2 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within semicircular canal morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; integument; intermediate mesoderm; nervous system; and yolk. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1-like

GO:

id name namespace
GO:0048752 semicircular canal morphogenesis biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01537 ATP2C; P-type Ca2+ transporter type 2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247143.1 True 3283 mRNA 0.47 22 1364542 1370987
XM_043247230.1 False 3182 mRNA 0.47 22 1364542 1370825

Neighbor

gene id symbol gene type direction distance location
LOC122350472 atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679 coding downstream 10746 1347494 ~ 1353796 (-)
si:ch211-132g1.6 NA coding downstream 30718 1331683 ~ 1333824 (-)
si:ch211-132g1.1 NA coding downstream 39749 1318790 ~ 1324793 (-)
ptgfrnb LOC107730397,LOC107555256,LOC107653676,LOC107559799,LOC107677843,LOC107746979,LOC107717917 coding downstream 49004 1277500 ~ 1315538 (-)
slc5a3a slc5a3a,LOC107730390,LOC107677845,LOC107555245,LOC107559792,LOC107746980,LOC107653669 coding downstream 94617 1264771 ~ 1269925 (-)
atp1a1a.1 atp1a1a.1,LOC107718011,LOC107555257,LOC107698904,LOC107653678,LOC107717912,LOC107568774 coding upstream 21942 1392929 ~ 1402824 (-)
LOC122350642 atp1a1a.4,LOC107717913,LOC107653679,LOC107555265,LOC108429865 coding upstream 33591 1404578 ~ 1412946 (-)
rcan1b rcan1b,LOC107555267,LOC107698909,LOC107568778,LOC107653682,LOC107718018,LOC107709340 coding upstream 71804 1442791 ~ 1455071 (-)
urp2 LOC107698908 coding upstream 94450 1465437 ~ 1469101 (-)
wu:fa56d06 LOC107555251,LOC107751082 coding upstream 234889 1605876 ~ 1612082 (-)
G247 NA non-coding downstream 17753 1344298 ~ 1346789 (-)
G244 NA non-coding downstream 79733 1282838 ~ 1284809 (-)
LOC122347488 NA non-coding downstream 101339 1256189 ~ 1263203 (-)
G231 NA non-coding downstream 390573 973746 ~ 973969 (-)
G125 NA non-coding downstream 473955 890244 ~ 890587 (-)
G260 NA non-coding upstream 70101 1441088 ~ 1441512 (-)
G297 NA non-coding upstream 196051 1567038 ~ 1567532 (-)
G303 LOC107698893,LOC107555241,LOC107751081,LOC107653672,LOC107571885 non-coding upstream 209756 1580743 ~ 1582087 (-)
G304 NA non-coding upstream 212904 1583891 ~ 1584684 (-)
G347 NA non-coding upstream 412208 1783195 ~ 1784512 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 132895 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 616178 738137 ~ 748364 (-)
G67 NA other downstream 928417 435808 ~ 436125 (-)
G20 NA other downstream 1177457 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 221082 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1317778 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1765521 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2636853 4007840 ~ 4014287 (-)
G820 NA other upstream 2927323 4298310 ~ 4299193 (-)

Expression


Co-expression Network