LOC122350642 (atp1a1a.4,LOC107717913,LOC107653679,LOC107555265,LOC108429865)


Basic Information

Item Value
gene id LOC122350642
gene name atp1a1a.4,LOC107717913,LOC107653679,LOC107555265,LOC108429865
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1404578 ~ 1412946 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247346.1
TGGCAGGGTATAAATCTCGTGAACCTGACTTGGACACACAGGAGCTTTTTGTCTCCGGAGAGGCTTTCAGGAAAACTACGACATCTAAGATCCAAAAGTTTcagaatttgaattgaaataaacCAGGAAAATGGGGCTTGGAACGGGGAATGATAAGTACAAATTGGCTGCAACTTCAGAAGATGGAgccaaaaaaccaaaaaaagggaaaagaaagcAGAAGGACATGGACGATCTCAAAAAAGAAGTGGATCTGGATGACCATAAGTTGACTTTGGACGAGCTTCACCGCAAATATGGAACCGACCTAACTAGGGGCTTGTCTTCTTCCCGTGCAAAGGAGATCTTAGCCCGTGATGGGCCCAATGCCCTGACCCCACCTCCTACGACTCCAGAATGGGTCAAGTTCTGCAAACAGCTCTTCGGTGGGTTCTCAACACTGCTGTGGATCGGTGCAATCCTTTGTTTCCTGGCATATGGAATCCAAGCTGCCTCCGAAGACGAACCTGCAAATGACAATCTGTACCTGGGAATTGTGCTTGCTGCTGTTGTCATAATAACAGGATGCTTCTCATACTACCAAGAGGCCAAGAGCTCTAAAATCATGGAATCTTTTAAGAACCTTGTACCTCAGCAAGCCCTGGTTGTGCGtgatggagagaaaaagagtaTCAATGCAGAGGAGGTAGTCGCCGGTGACCTTGTGGAGGTCAAAGGTGGAGACAGAATCCCAGCTGATCTTCGCATCATCTCTGCGCATGGATGCAAGGTGGACAACTCTTCACTCACTGGTGAATCTGAGCCCCAGACTCGTACTCCTGACTTCTCCAATGAAAATCCCCTGGAAACCAGAAACATTGCCTTCTTCTCTACTAACTGTGTTGAAGGTACTGCCAGAGGGATTGTCATTAACACTGGTGACCGTACTGTCATGGGTCGTATTGCCACTCTTGCCTCAAGTCTGGAAGGTGGAAAAACACCAATTGCTAAAGAGATTGAGCACTTCATCCACATCATCACTGGTGTAGCTGTCTTCCTGGGAGTCAGCTTCTTCATTCTTTCCCTGATTCTTGGATACGGGTGGTTGGAAGCTGTTATCTTCCTGATTGGTATCATTGTTGCAAATGTACCTGAAGGTCTTCTTGCCACTGTAACTGTGTGTCTAACTCTGACCGCCAAACGTATGGCGAAGAAAAACTGCCTGGTGAAGAATCTGGAAGCCGTGGAGACTCTTGGTTCAACCTCCACCATCTGCTCTGACAAGACTGGAACTTTGACCCAGAACCGAATGACCGTCGCTCACATGTGGTTTGACAACCAGATTCATGAAGCAGACACCACAGAGAACCAGAGTGGAACCTCCTTTGACAGGAGCTCTCCAACCTGGTCTGGTCTTGCACGTGTTGCTGGCTTGTGCAACCGTGCCGTCTTCCTTGCTGATCAAAGTAACGTGCCAATCCTTAAGCGAGACACAGCTGGCGATGCCTCAGAGTCTGCCCTTTTGAAGTGTATTGAGCTATGCTGTGGTCCAGTCACTGAAATGAGAGAGAAGTACTCAAAGATTGCTGAAATTCCTTTCAACTCCACCAACAAGTATCAgCTCTCAATCCACAAGAATCCAAACTCCTCAGAGTCTAAGcacctgctggtgatgaagggaGCCCCAGAGAGAATCTTGGATCGATGCTCTACTATTTTGATTCAAGGAAAAGAGCAGCCTTTGGACGATGAAATGAAAGATGCTTTCCAAAATGCCTACGTAGAACTTGGAGGTCTTGGAGAAAGAGTGCTGGGATTCTGCCACTTTAGCCTCCCTGATGACCAGTTTCCTGAGGGTTTTGCATTCGATACAGATGAAGTGAACTTTCCTACTGAGAACCTGTGTTTTGTTGGCCTCATGTCCATGATAGATCCTCCTCGTGCAGCTGTACCAGACGCTGTGGGCAAGTGCAGGAGCGCAGGAATCAAGGTTATCATGGTTACTGGAGACCATCCAATTACAGCTAAGGCTATTGCAAAGGGTGTTGGCATCATCTCTGAAGGCAATGAGACTGTGGAAGACATTGCTGCTCGTTTAAACATTCCTGTTGGAGAGGTCAATCCAAGGGATGCCAAGGCCTGTGTGGTCCATGGTGGAGAACTAAAGAATATGAGTGAAGAAGAGTTGGATGATATCCTCAAACACCATACAGAAATTGTGTTTGCCAGAACTTCTCCACAACAAAAGCTAATCATTGTGGAAGGTTGTCAGAGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGTGTCAATGATTCTCCTGCTCTGAAGAAGGCTGATATTGGTGTGGCTATGGGTATCGCTGGGTCTGATGTATCTAAACAAGCTGCTGACATGATCCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGACGTCTGATCTTTGATAACTTGAAGAAGTCCATTGCCTACACACTGACCAGCAACATCCCTGAGATCTCACCTTTCCTCTTGTTCATCATTGCTAATATTCCTCTACCTTTGGGCACAGTCACAATTCTCTGTATTGACCTGGGCACTGACATGGTTCCTGCTATCTCATTGGCCTACGAAAGTGCTGAAAGTGACATCATGAAGAGACAACCCAGAAATGCTAAAACAGATAAACTGGTGAACGAGAGGCTCATCAGTATGGCCTACGGTCAAATTGGCATGATGCAAGCAGTTGCAGGGTTCTTTACCTACTTTGTAATTCTTGCCGAGAACGGATTCCTGCCCTCCGATTTATTAGGAATTAGAGTCAACTGGGACGATAAGTTTCTCAATGACTTGGAAGATAGCTATGGCCAACAATGGACGTATGAGCGCAGAAAAATTGTGGAGTTCACATGCCACACAGCCTTCTTCGCCAGTATTGTGATTGTGCAGTGGGCAGATCTGATCATCTGCAAGACCAGGAGGAATTCCATCATACAGCAGGGAATGAGAAACAAAATCCTCATCTTTGGCCTGTTTGAAGAAACTGCTCTGGCGGCTTTCTTGTCCTACTGCCCAGGCATGGACATAGCTTTGAGAATGTATCCTCTCAAACCATGTTGGTGGTTCTGTGCCTTCCCATATTCGCTGCTCATCTTCGTCTATGATGAAGTTAGAAGATACATCCTTAGGCGGAGCCCAGGAGGCTGGGTGGAAAAAGAAACATACTACTGAAACACGAAGACTTTCTGTTGCAAACATACGTGAGAAGacattcattttgatattttttaaaatgatacagaATCTGGTCATTTTCAGTCAATAAATTTGTCAAATTAGAAAGA

Function

symbol description
atp1a1a.4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1

GO:

id name namespace
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247346.1 True 3318 mRNA 0.46 22 1404578 1412946

Neighbor

gene id symbol gene type direction distance location
atp1a1a.1 atp1a1a.1,LOC107718011,LOC107555257,LOC107698904,LOC107653678,LOC107717912,LOC107568774 coding downstream 1754 1392929 ~ 1402824 (-)
LOC122350536 atp1a1a.2,atp1a1a.4,atp1a1a.3,LOC107698906,LOC107555259,LOC107717913,LOC107555265,LOC107653679 coding downstream 33591 1364542 ~ 1370987 (-)
LOC122350472 atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679 coding downstream 50782 1347494 ~ 1353796 (-)
si:ch211-132g1.6 NA coding downstream 70754 1331683 ~ 1333824 (-)
si:ch211-132g1.1 NA coding downstream 79785 1318790 ~ 1324793 (-)
rcan1b rcan1b,LOC107555267,LOC107698909,LOC107568778,LOC107653682,LOC107718018,LOC107709340 coding upstream 29845 1442791 ~ 1455071 (-)
urp2 LOC107698908 coding upstream 52491 1465437 ~ 1469101 (-)
wu:fa56d06 LOC107555251,LOC107751082 coding upstream 192930 1605876 ~ 1612082 (-)
n6amt1 n6amt1,LOC107563652,LOC107727005,LOC107698915,LOC107689945,LOC107751077 coding upstream 549368 1962314 ~ 1968862 (-)
LOC122342174 adamts5,LOC107751075,LOC107593743 coding upstream 738705 2151651 ~ 2155943 (-)
G247 NA non-coding downstream 57789 1344298 ~ 1346789 (-)
G244 NA non-coding downstream 119769 1282838 ~ 1284809 (-)
LOC122347488 NA non-coding downstream 141375 1256189 ~ 1263203 (-)
G231 NA non-coding downstream 430609 973746 ~ 973969 (-)
G125 NA non-coding downstream 513991 890244 ~ 890587 (-)
G260 NA non-coding upstream 28142 1441088 ~ 1441512 (-)
G297 NA non-coding upstream 154092 1567038 ~ 1567532 (-)
G303 LOC107698893,LOC107555241,LOC107751081,LOC107653672,LOC107571885 non-coding upstream 167797 1580743 ~ 1582087 (-)
G304 NA non-coding upstream 170945 1583891 ~ 1584684 (-)
G347 NA non-coding upstream 370249 1783195 ~ 1784512 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 172931 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 656214 738137 ~ 748364 (-)
G67 NA other downstream 968453 435808 ~ 436125 (-)
G20 NA other downstream 1217493 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 179123 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1275819 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1723562 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2594894 4007840 ~ 4014287 (-)
G820 NA other upstream 2885364 4298310 ~ 4299193 (-)

Expression


Co-expression Network