atp1a1a.1 (atp1a1a.1,LOC107718011,LOC107555257,LOC107698904,LOC107653678,LOC107717912,LOC107568774)


Basic Information

Item Value
gene id atp1a1a.1
gene name atp1a1a.1,LOC107718011,LOC107555257,LOC107698904,LOC107653678,LOC107717912,LOC107568774
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1392929 ~ 1402824 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247451.1
AGTGTGCGCGCTGTAACGCGGCTTGGATGCGTGTCCGGTTGGAACGACGCGTCCGGCGGTGaccaaggggaaaaaaaagaccaaaaaaagagGAAACGGGATCGGGgacttttaatttgttgtttttaaagaaagcttggattTTTTTTGGGAAACCCAGGTGGTCGTTTTTTTTTATCGAAAGAAGCAAAATGGGACGAGGAGAAGGACGAGAACAATATGAGCTGGCAGCCACCTCAGAGCAGGGGGCAAGAGGCCAAAGCCCAAGGGCAAGAAAGAGAAGGATATGGATGAACTCAAAAAAGAGGTGGACTTGGATGATCACAGACTGTCCCTGGATGACCTCACCAGGAAATACAGCACCGATTTAACTAGGGGATTGTCAGGCACTCGTGCTAACGAGATCTTGGCGCGTGATGGACCCAATGCTTTGACTCCACCTCCAACTACCCCAGAATGGGTCAAGTTCTGCAAGCAGCTCTTTGGAGGATTCTCAACTCTCCTGTGGATTGGAGCCATCCTTTGTTTTCTTGCCTACGGCATTCTGGCGGCCTCTGAAGAGGAACCTGGCAATGATAATTTGTATCTGGGTATCGTACTCTCTGCTGTCGTGATGATCACTGGATGTTTCTCGTACTATCAAGAGGCCAAGAGCTCCAAGATCATGGACTCTTTCAAGAACCTTGTCCCTCAGCAAGCCTTGGTTATCCGTGATGGTGAGAAGAATAATATCAATGCTGAAGAAGTTGTGGTTGGAGATCTTGTGGAAGTCAAAGGTGGTGATAGAATTCCTGCTGATCTGCgtatcatttctgctcatggatGCAAGGTGGACAACTCCTCCCTCACTGGAGAATCTGAGCCCCAGACTCGTACTCCTGACTTCTCTAATGACAACCCACTGGAGACCAGGAACATTGCGTTTTTCTCTACCAACTGTGTTGAAGGCACTGCCAGGGGTATCGTCATCAACACTGGTGACCGCACTGTCATGGGTCGTATTGCCACTCTTGCTTCTGGTCTTGAAGTTGGTCGCACCCCCATCTCTATTGAGATTGAGCACTTTATCCACATTATCACTGGTGTAGCCGTCTTCCTGGGTGTCTCCTTCTTTATCCTCTCCCTGATCCTTGGCTACACTTGGTTGGAAGCTGTCATCTTCCTTATTGGTATTATTGTTGCTAATGTGCCAGAGGGTCTCCTTGCTACCGTAACAgtGTGTTTGACTCTGACTGCCAAACGTATGGCAAAGAAGAACTGCCTGGTGAAGAATCTGGAAGCCGTGGAGACTCTTGGCTCGACCTCCACCATCTGCTCTGACAAGACTGGTACTTTGACCCAAAACCGAATGACTGTCGCTCACATGTGGTTTGACAACCAGATTCATGAAGCGGACACCACAGAGAACCAGAGTGGAACCTCTTTTGACAGGAGCTCTGCTACTTGGGCCGCCCTTGCACGTGTCGCCGGTCTCTGCAACCGTGCCGTCTTCCTTGCTGATCAAGAAAGCATCCCAATTCTTAAGAGAGACGTGGCTGGTGACGCCTCAGAATCTGCCCTGCTGAAGTGTATTGAGCTCTGCTGTGGATCGGTgaaagagatgagagagaaaTACAACAAGATTGCTGAGATTCCATTCAACTCCACCAACAAGTATCAGCTCTCCATCCATAAGAACCCCAACAGCAATACAACAGAATCCACTCACCTGCTAGTAATGAAAGGCGCTCCTGAAAGGATCTTGGACAGGTGCAGCTCTATTTTGATCCAAGGAAAAGAGCAGCCGCTTGATGATGAGTTGAAGGATGCCTTCCAGAATGCCTACTTGGAACTTGGGGGCCTTGGAGAAAGAGTATTGGgattCTGTCACTTCAACCTTCCTGATGAACAGTTTCCTGAGGACTTCCAGTTCGATACAGATGAGGTGAACTTCCCCACTGAGAACTTATGCTTCATTGGCCTTATGTCCATGATCGATCCTCCTCGTGCTGCTGTACCAGATGCCGTGGGCAAATGTAGGAGTGCTGGAATCAAGGTTATCATGGTTACTGGTGATCATCCAATCACAGCCAAGGCCATTGCCAAAGGAGTGGGTATCATCTCTGAGGGCAACGAGACTGTTGAAGACATTGCTGCCCGCTTGAACATTCCTATTAATGAGGTCAATCCAAGggatgcCAAGGCTTGCGTGATCCATGGTGGTGACCTGAAGGATCTGACCCCAGAGCAATTAGATGATGTCTTGAAACACCACACAGAAATTGTGTTTGCCAGAACGTCTCCTCAGCAGAAGCTGATTATCGTTGAAGGCTGCCAAAGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGTGTCAATGATTCTCCTGCTCTGAAGAAGGCTGATATCGGTGTGGCTATGGGTATCGCTGGGTCTGACGTATCTAAACAGGCTGCTGACATGATCCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGCCGTCTGATCTTTGACAACTTGAAGAAGTCAATTGCCTATACACTGACCAGCAACATCCCTGAGATTACCCccttcctcctcttcatcattGCCAACATCCCTCTTCCTTTGGGAACAGTCACCATTCTTTGCATTGACTTGGGTACTGACATGGTTCCTGCCATCTCATTGGCCTATGAAGCTGCTGAGAGTGACATCATGAAGCGTCAACCTAGAAACCCCAAAACGGACAAACTTGTGAACGAGAGGCTGATTAGCATAGCCTATGGTCAAATAGGTATGATTCAAGCTCTGGCTGGGTTCTTCACATATTTTGTCATCTTGGCTGAAAATGGCTTCCTGCCGTCGTCATTGCTGGGCATACGAGTGTTATGGGATGATAAACACGTCAATGACCTGGAGGACAGTTACGGCCAGCAATggACATACGAGCAAAGGAAGATTGTGGAGTTCACATGTCACACGGCCTTCTTCACCAGTATTGTGATTGTACAATGGGCCGATTTGATCATCTGCAAGACCAGAAGAAACTCTGTCTTCCAGCAAGGAATGAAGAATAAGATTCTCATCTTTGGACTGTTTGAAGAAACCGCTCTTGCAGCTTTCCTGTCCTACTGCCCAGGCATGGATGTTGCCCTCAGAATGTACCCACTAAAACCAAACTGGTGGTTCTGCGCCTTCCCCTACTCACTCCTCATCTTTATTTATGATGAAATCCGAAAACTTATCATTCGACGCAGCCCAGGGGgTTGGGTGGAGAGGGAGACCTACTATTAAAGCATCCAGTCTGCATCACAAGTTTATTTGCATGGTTGTCTCGCTGCTCGGAATTTTAACCTCAGtaatttggatgtttttataTAGGGAATGCTTGATACAAACACCGAGATCGTGAACCAAGACATTGCGTGCCTTGTTTCTGAAGCCGGACCaattttatacatgtttttaaaagtgtaatataaaaataaacttgcagTCAGGTCCCA

Function

symbol description
atp1a1a.1 Enables P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within several processes, including animal organ development; embryonic body morphogenesis; and regulation of heart rate. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; mesoderm; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0030916 otic vesicle formation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247451.1 True 3483 mRNA 0.48 22 1392929 1402824

Neighbor

gene id symbol gene type direction distance location
LOC122350536 atp1a1a.2,atp1a1a.4,atp1a1a.3,LOC107698906,LOC107555259,LOC107717913,LOC107555265,LOC107653679 coding downstream 21942 1364542 ~ 1370987 (-)
LOC122350472 atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679 coding downstream 39133 1347494 ~ 1353796 (-)
si:ch211-132g1.6 NA coding downstream 59105 1331683 ~ 1333824 (-)
si:ch211-132g1.1 NA coding downstream 68136 1318790 ~ 1324793 (-)
ptgfrnb LOC107730397,LOC107555256,LOC107653676,LOC107559799,LOC107677843,LOC107746979,LOC107717917 coding downstream 77391 1277500 ~ 1315538 (-)
LOC122350642 atp1a1a.4,LOC107717913,LOC107653679,LOC107555265,LOC108429865 coding upstream 1754 1404578 ~ 1412946 (-)
rcan1b rcan1b,LOC107555267,LOC107698909,LOC107568778,LOC107653682,LOC107718018,LOC107709340 coding upstream 39967 1442791 ~ 1455071 (-)
urp2 LOC107698908 coding upstream 62613 1465437 ~ 1469101 (-)
wu:fa56d06 LOC107555251,LOC107751082 coding upstream 203052 1605876 ~ 1612082 (-)
n6amt1 n6amt1,LOC107563652,LOC107727005,LOC107698915,LOC107689945,LOC107751077 coding upstream 559490 1962314 ~ 1968862 (-)
G247 NA non-coding downstream 46140 1344298 ~ 1346789 (-)
G244 NA non-coding downstream 108120 1282838 ~ 1284809 (-)
LOC122347488 NA non-coding downstream 129726 1256189 ~ 1263203 (-)
G231 NA non-coding downstream 418960 973746 ~ 973969 (-)
G125 NA non-coding downstream 502342 890244 ~ 890587 (-)
G260 NA non-coding upstream 38264 1441088 ~ 1441512 (-)
G297 NA non-coding upstream 164214 1567038 ~ 1567532 (-)
G303 LOC107698893,LOC107555241,LOC107751081,LOC107653672,LOC107571885 non-coding upstream 177919 1580743 ~ 1582087 (-)
G304 NA non-coding upstream 181067 1583891 ~ 1584684 (-)
G347 NA non-coding upstream 380371 1783195 ~ 1784512 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 161282 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 644565 738137 ~ 748364 (-)
G67 NA other downstream 956804 435808 ~ 436125 (-)
G20 NA other downstream 1205844 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 189245 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1285941 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1733684 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2605016 4007840 ~ 4014287 (-)
G820 NA other upstream 2895486 4298310 ~ 4299193 (-)

Expression


Co-expression Network