LOC122351178 (LOC107739159,LOC107694465,LOC107570071,LOC107751098,LOC108429813,LOC108258592)


Basic Information

Item Value
gene id LOC122351178
gene name LOC107739159,LOC107694465,LOC107570071,LOC107751098,LOC108429813,LOC108258592
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2559530 ~ 2560339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248069.1
AAAACTCAAGACCTTTAGCTGAGAAGCAAACAACTTTATTGCTGTTCTTTGTTTATTGTCGGTGTCTCAATCAGATCCGTCTCGTCATGTCCGGTCGCGGTAAGAAGCTGGTCGCTGCGCAGAAGACCAAGTCGTCGTCGGTGTCGCGCTCGACGCGCGCGGGGCTGCAGTTCCCGGTCGGTCGCGTCGCGCGGCTGCTGCGGAAGGGGAACTACGCGTCGCGCATCGGCTCCGGGGCGGCGGTGTACCTCACGGCGGTCATCGAGTATCTGTGCGCCGAGGTGCTGGAGCTGGCGGGCAACGCGAGCCGCGACAACAAGAAGCTGCGCATCGCGCCGCGTCACATCCAGCTCGCGGTGCGCAACGACGAGGAGCTGAACACGCTGCTGGGGGGCGTCACCATCTCCGAGGGGGGCGTGCTCCCCAACATCCAGGCGCAGCTCCTGCCGAAGAAGACCAAGGGCCCTCGGGACCCGGCCGACTCCAGCAAAGACATCCAGTCCCAGGACTTCTGACGGAGCTGCCTCCCTCTTCATCACTTTTAACTTAATAAACGTATTCatggtttttcttttaa

Function

NR:

description
PREDICTED: histone H2A, sperm-like isoform X1

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248069.1 True 577 mRNA 0.60 2 2559530 2560339

Neighbor

gene id symbol gene type direction distance location
f7l LOC107751062,LOC107694469,LOC107570084,LOC107551096,LOC107747071 coding downstream 14544 2540488 ~ 2544986 (-)
f7 f7,LOC107747062,LOC107654615,LOC107551097,LOC107570083 coding downstream 19115 2536351 ~ 2540415 (-)
f7i f7,LOC107747061,LOC107654598 coding downstream 24877 2530896 ~ 2534653 (-)
f10 LOC107654567,LOC107751061,LOC107694470,LOC107570070 coding downstream 30042 2524609 ~ 2529488 (-)
prozb NA coding downstream 36212 2518723 ~ 2523318 (-)
pou2f1a pou2f1,LOC107751057,LOC107662118,LOC107654677 coding upstream 14403 2574742 ~ 2588258 (-)
dusp27 dusp27 coding upstream 29308 2589647 ~ 2597889 (-)
LOC122353060 LOC107570085,LOC107751087,LOC107711130,LOC107576869 coding upstream 44065 2604404 ~ 2628263 (-)
LOC122345881 prss23,LOC107570079 coding upstream 140151 2700490 ~ 2704267 (-)
LOC122342272 LOC107751049 coding upstream 150378 2710717 ~ 2717844 (-)
G638 NA non-coding downstream 666 2556243 ~ 2558864 (-)
LOC122351916 NA non-coding downstream 7269 2548924 ~ 2552261 (-)
G647 NA non-coding downstream 43355 2515654 ~ 2516175 (-)
G640 NA non-coding downstream 48841 2474322 ~ 2510689 (-)
G617 NA non-coding downstream 179589 2378431 ~ 2379941 (-)
G653 creg1,LOC107751059,LOC107739160,LOC107654633,LOC107551109,LOC107694464 non-coding upstream 1016 2561355 ~ 2561966 (-)
G652 creg1,LOC107694464,LOC107751059,LOC107551109,LOC107739160,LOC107654633 non-coding upstream 1852 2562191 ~ 2564410 (-)
G666 NA non-coding upstream 92378 2652717 ~ 2654832 (-)
G681 NA non-coding upstream 179888 2740227 ~ 2742428 (-)
LOC122351434 NA non-coding upstream 260849 2821188 ~ 2833731 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 954546 1592069 ~ 1604984 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 1327883 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 1811166 738137 ~ 748364 (-)
G67 NA other downstream 2123405 435808 ~ 436125 (-)
G20 NA other downstream 2372445 186420 ~ 187085 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 128426 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 576169 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 1447501 4007840 ~ 4014287 (-)
G820 NA other upstream 1737971 4298310 ~ 4299193 (-)
mdh1b mdh1b other upstream 2395780 4956119 ~ 4960210 (-)

Expression


Co-expression Network