tubgcp3 (tubgcp3,LOC107692132,LOC107746265,LOC107718870)


Basic Information

Item Value
gene id tubgcp3
gene name tubgcp3,LOC107692132,LOC107746265,LOC107718870
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22603737 ~ 22621251 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248691.1
GTGCTGTGTTTTCCGTCGACTGTCCGACTGTGGGCGCTTTTCGGCGGGTTCCGTTAAAATGGCGCTGTTGTTGCCAGGAGCTGAAAGACAGCAGATGAAAAGCGACAGCGGTTAAAAACCCACGGTGGACCGTTTCTGCTCGCACGGAGGGTAATATATACGAGCACAATGGCGGCGCTTGATCAGAAATCGCCCAACGTGCTTCTGCAGAATCTGTGCTGTAAGATCATGGGCAAGAGTGAAGCTGATGTGGCCCATCAGTTCCAGTATGCCGTGCGGGTCATCGGAAGTAATTATGCACCCACAATCGAACGAGATGAGTTTCTGGTGTCTgaaaagattaagaaagaaTTGCTGAAACAAAGACGGGAAGCAGATGCGGCCCTCTTCTCTGAGTTGCACCGAAAGCTTCAGACCCAGGGTATATTGAAACATAGATGGTCCATCTTATACCTCCTGCTCAGCCTCTGTGAGGACCCAAGGAAGCCGTCTAACCGTGTTCCTGTGTGTAGTTATGGAGCTCTGCTTGCCCAGGCTTTGCCTCGTGATGTCCACTCCACCCCGTTCTACTACGCCCGGCCCCAGAGCCTCCCGCTCAGCTACCCAGAGCGCTCAGCCACTGCCCATAACTCCAGCATGGCCACCAGTGGCATCAGCAGTATGGGAGTATTCTCAATCAACGGGCCCGGGCCGACTCCTCCGTCTCTGCTCACCGGACCTGGACCCCAGGCTGTCGGTGAGTCTATGAGAGGGTCTCGTCTCGCCTGGACTCTCCCGGTCTCCAGTTCACCCTCTGGGGCAGCTGCTGCCCCTCGTCCCCCCAGTGGACCCTCTTCCGGTCAGGCACCCAAACTCCCACAGAGACCGAGGCGGGAAGGAGATGGCAGTGCTGAGATCGGAGAGGCTGCTCTCGTTCGAGACATTCTTTATGTTTTCCAGGGAATAGACGGAAAGTTCATCAAGATGTGCAGCCCAGAAAACTGCTACAAAATTGATTCAAAGGTGCCATTGTGTAAGTCTCTAAGAGACACCAGTAGCAGGCTAGCAGAGCTCGGCTGGCTCCACAATAAGATTAGAAAATACACAGATTCCCATAGCCTGGATCGAGCCTTTGGCTTAGTCGGACAGAGTTTTTGTGCTGCGTTGCATCAAGAGCTGAAGGAGTACTACAGATTGTTGTCTGTACTTCATGCACAGCTCCAGGTGGAAGACGATCAGGGTGTAAACATGAGCGTGGACAGCAGTCTGACTCTGAGGAGACTGCTGGTGTGGACCTACGACCCCAAGGTTCGACTGAAAACACTAGCTGCTCTGGTGGACTACTGCCAAGGGCGTAAAGGAGGAGAGTTGGCCTCAGCTGTACATGCTTATGGAAAGACGGGTGACCCTCACATGAGAGCGTTGATCCAGCACATCCTTGGTCTGGTGTCCCACCCCATTCTTAACTTCCTGTATCGCTGGATCTACGACGGAGAGCTGGAGGATACGTACCATGAGTTCTTTGTAGCTTCAGACCCAACGGTGAAGACAGACAGGCTGTGGCACGACAAGTACTCTCTGAGGAAGAGCATGATCCCCTCCTTCATCACCATGGATCAAGCCAGGAAGGTGCTACTCATTGGCAAATCCATCAACTTCCTGCATCAGGTATGCCACGACAGGACGCCGCCGGGAAAGATCATGCCCGCCTCCAAATCCACCGACTCTCCCAAAGATGCGGCAGAGCTGTTCACTGATCTGGAAGGGGCCTTTCAGAGTAAGATTGATGCTGCATATTTTGAGACCAGTAAGTATCTGTTGGATGTGTTGAATAAGAATTACCAGCTGCTGGAGCATCTTCAGGCTATGAGGAGATACCTGCTGCTGGGCCAAGGAGACTTCATCCGTCACCTCATGGACCTCCTcaaGCCAGAGTTGGCGAGAGCTGCCACCACTCTTTACCAACACAATCTAACCGGTATCCTGGAGACTGCTGTCAGAGCAACTAATGCCCAGTTTGACAGTCCAGAGATCCTGAAGAGGCTTGACGTACGGCTACTGGAGGTTTCTCCCGGGGACACTGGTTGGGATGTCTTCAGTTTGGATTATCATGTAGAGGGGCCCATTGCCACGGTGTTCACCCGTGAGTGCATGAGCCACTACCTGCGAGTGTTCAACTTCCTGTGGAGAGCCAAAAGAATGGAGTACATCCTCACAGATATATGGAAGGGTCAAATGTGTAACGCCAAACTGCTGAAGAGCATGCCGGAGCTCTCTGGTGTGCTGCACCAATGTCACGTTCTCGCTTCCGAGATGGTTCACTTCATCCATCAGATGCAGTATTACATCACATTTGAGGTGTTGGAGTGCTCTTGGGATGAGCTGTGGAATAAGGTCCAGCAGGCTCAGGACCTGGATCACATTATAGCAGCTCATGACGTTTTTCTGGACACCATCATTTCTCGCTGCCTGCTGGATGTGAACAACAGGtctCTGTTGAATCAGTTGCGCGCAGTGTTTGATCAGATCATTGAGTTCCAGAATGCTCAGGACACTCTGTACCGCTCTGCTCTAGAAGAGCTGCAACTACGCATCCAGTTCGAAGACAAGAAGAGACAGAGGGAACAAATGGGCGAGTGGGGTGTAACAGCAGAGCAGGAGGCAGAAGAGAACAGACGTGTGCAGGAGTTTAAAGACACCATACCAAAAATGTGCTCTCAGCTCAGATTACTCACACACTTCTATCAGGGCATAGTGCAGGAGTTTCTGCGGCTGCTAATGACAAGCTCTGATGAGAGTCTTCAGTTCCTCAGTTTCCGTCTGGACTTCAACGAGCATTATAAGGCCCGTGATCCGCGCCTGCGGCCCTCGCTTGGGGCCACTAGAGGGAGACGAAGCTCCAACATCTGACCTTGCAGACTTTGGGAAAGTTAATGTTATGTGGTTGCTGTCAAGAGACTGTTTATTAATAGGGCTACTCAGAACTTTTCTGACGCTCTGTAAGAAACTCATATAACAGGGAAACTGTTTATAGGATATTCTATTTCAATGTCATCGCCAAATAACTTCAGTCACACACAATCAACTATCTAGTGATTTTAGTGTAATTGTCAGTAGCACAAGGTCACAGGTctgtggtttctttttttttccccttcagtTAATGTGTGAATATTAGTTTTTGTAAAGATTTGTGTTTGGGTTTACATTTTGGTAATATTTAAATCCGTATTATTCACGTTTCTTGGTTTTGTAAGGCCCTTTCTTATTTTCCGCTTCAACGTGAGTTTGTGTCTTAAAGTCTCCTGATgttgaaaaaagacaaatgtgaTTGGCTGTGAAGTCGGTCAGTTTATCTGGTGCATATGTGGCATCCTGTGGTTCTGGATCAGTGCTGAAGGAGCCTTTTTTCATCTTTCAACTCCattttctcatatatatatatatatatatatatatatatatatatatatatatatatatgaatatatatatgaatttttttttttaggtttgtaaTTAAACAGGCTGTGACCTTTTTGTACTGCgtgtataaaaaacaaaacaaaaaaaaaaaaccttaaatgtCAACCAGTTCTTTAATTTATATGAATGGACCTGTTGAAATGACATGCACTTAAATGAACTACATGACCTCTGTAAGATCCTGTAAACTCACCTCATTTCATACATGCAAAATCAGTTACCCACAATGCTGTGTGATCTTATCGAGCCTCAGGGTGATACTGTGAGGACAAAGTTGATATTCTGAAGTATTGGATCCTTATGGGCAAGACTGTAGATTACTGTTGTAGTGTTTATCCCTCCCTTGTCTTTCCCATGTTCATGAAATGTACTGATAGAAGTGGCTTGGTAAAGCTGGTGAAAATCTGTCTCGCCCTCTTCCCCTGTGGTGCGCACTTAtgtggagaaaatgaaaattgactGAAGAATTCCTTTTTGTCCTTGGCTTAAGTGGAAAAGACAGTGACGCGTCGCAGCAATGGTTTTTATAGGTCTTTTAATGCGTTGCAGGGATTTAAGGGTTAAGCAGAGTAAAATGATTGTCCATTAAAGAGTTTGAAACTCTTTCTACACTGTATAGCACATGTGTACAAAGCAGAATTCAACATGAGCAAACATCCTGTCATTCTTTTCTCGaacaaataaacctttttatataaaataaaaa

Function

symbol description
tubgcp3 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin small complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Is expressed in ciliary marginal zone; head; and optic cup. Orthologous to human TUBGCP3 (tubulin gamma complex associated protein 3).

NR:

description
gamma-tubulin complex component 3 homolog isoform X2

GO:

id name namespace
GO:0007020 microtubule nucleation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16570 TUBGCP3, GCP3; gamma-tubulin complex component 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248691.1 True 4171 mRNA 0.47 22 22603737 22621251

Neighbor

gene id symbol gene type direction distance location
sox1b sox1b,sox1a,LOC107746263,LOC107567792,LOC107676867,LOC107692134,LOC107718482,LOC107603037 coding upstream 85127 22515466 ~ 22518610 (+)
arhgef7b arhgef7b,LOC107567796,LOC107676887,LOC107718510,LOC107692139,LOC107746262 coding upstream 155434 22426984 ~ 22448303 (+)
eif5b eif5b,LOC107567794 coding upstream 176977 22414638 ~ 22426760 (+)
lipt1 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 coding upstream 189567 22412157 ~ 22414170 (+)
map2k7 map2k7,LOC107712243,LOC107692141,LOC107676852,LOC107718577 coding upstream 219768 22371229 ~ 22383969 (+)
mcf2la mcf2l,mcf2la,LOC107676858,LOC107692131 coding downstream 2301 22623552 ~ 22684618 (+)
cab39l cab39l,LOC107676861,LOC107718429 coding downstream 64588 22685839 ~ 22695741 (+)
arl11 arl11,LOC107676843,LOC107746302,LOC107560992,LOC107603040,LOC107718406 coding downstream 89742 22710993 ~ 22711961 (+)
cryzl1 cryzl1,LOC107560977,LOC107603049 coding downstream 281505 22902756 ~ 22909636 (+)
cbr1 cbr1,LOC107746284,LOC107560976,LOC107692178,LOC108428204 coding downstream 292389 22913640 ~ 22916406 (+)
G5206 NA non-coding upstream 64265 22539270 ~ 22539472 (+)
LOC122350977 NA non-coding upstream 73249 22526122 ~ 22530488 (+)
G5178 NA non-coding upstream 216209 22385266 ~ 22387528 (+)
G5159 NA non-coding upstream 368208 22232347 ~ 22235529 (+)
G5134 ddx39aa,LOC107712218,LOC107676896,LOC107603018,LOC107692155,LOC107551870 non-coding upstream 533603 22068067 ~ 22070134 (+)
G5223 NA non-coding downstream 94285 22715536 ~ 22733117 (+)
LOC122346574 NA non-coding downstream 114183 22735434 ~ 22741631 (+)
LOC122331092 NA non-coding downstream 131235 22752486 ~ 22757654 (+)
G5264 NA non-coding downstream 186399 22807650 ~ 22809030 (+)
G5289 NA non-coding downstream 243583 22864834 ~ 22865790 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 968685 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 983145 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 1242297 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 2360388 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 2457881 20142461 ~ 20145856 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 219437 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 921813 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 1662231 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 1935546 24556797 ~ 24558929 (+)
G5817 NA other downstream 2082597 24703848 ~ 24704319 (+)

Expression


Co-expression Network