lztfl1 (lztfl1,LOC107701792,LOC107675311)


Basic Information

Item Value
gene id lztfl1
gene name lztfl1,LOC107701792,LOC107675311
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 422900 ~ 433678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249768.1
gaaggatAAGGGGAAGgggaaagagagatagagatagagacaCATATGGCGTTACTGGGCACATCAATACAGCGTAATTTTTGTCACTGTGCACAACagtaattactatttttaaattattggaAGGGGTGGGTGTAGAcgctaataaaacaaaatctaaaaggTAAATTGTTTGTTTCCGGTCGGAGCTGTATCCCTTTTAGccacaaaagaagaagaattaacACGTCCCCTGTAGTCACATGGCGAATCTGTCTCTAGTGTCTTTAGTAACGGAGTGACGCCGTTCTGTTTCTAAGCGCAACCCAGAAGCAAAATAAGGCTCTTCTCGCTAACTTTCATTGTAAATTCTGCAGTCCTTCACACCATTCCCAGTCTATTTTCATGAAAGTGCCTTTTGCTTTTCGGACCTTTTGTTAAGGCTCTATATTTAATATTGGATacgtttatttttcttcttgccACGTTAAAACTCTTCTGCATCACCCTGCCGTAATGGCTGATTTTGAGTTTAATGAGCATCATCAAAATGAGGTGATAAACTACATGCGTTTTGCCCGCTCTAAACGGGCACTGAGACTGAAGACAATTGACTCCTGCTTCCAAGATCTAAAAGATAGTAGGCTTATGGAAGAGACATATACAGTAGATGAGGTATCTGACATGCTGGACGGTCTGCAGGTGCTGGTGCGTGGAGAAGTGGAGATGGAACTAATAAACACAGCTCACACTAATGTGCTGCTTTTGCGACAACTCTTTTCCCAGGCAGAGAAATTCTACCTAAGGTTGCAAACGGACATTTCTGAGCTGGAAAACAGAGAACTACTAGAGCAAGTAGCTGAGTTTGAGAAGACTGATTTCAAAGCCAACAGCAAGgtAAATCAGGAGTCTAGTAAGCCAAAATTGGCACCACTGAATGAAGGAGGTGTGTCTGAACTACTCCAGaaggAGATTTCCAGACTACAAGAGGACAATGACAAACTAAAAGCTAGACTTAGGACTTTGGAATCTCAGGCCATGAGTGCTCTGGATGACAAGTCTAAAGCAGAGAGAGCCTTGAAAGACCTTCAGAAGAGCCAAGGAGATCAACAGTTTGCAACACATACTCAGGAGATCTCAAATTTGGAAGGCACAGTTGCAGCTATGCAGGCTGACTTTGAAAAGACCCTGAATGCTAACGTTGCATCTCAGAAAGACTTGCAGGACTGCCTGGTATCTGCCAAACATGACCTGCTCCGTGTCCAGGAACAACTTTCTCTTGCTGAAAAGGAACTGGAGAAGAAATTTCAGCAGACGGCTGCTTATCGCAACATGAAGGAGATTCTCACTAAAAAGAATGAACAGATTAAAGATCTGAGAAAGAGATTACAAAGGTATGAATCAGATGAGTGAATTTTAACCCACAGGAACACACATGAGGTCAACAGATTATCATTGGACCTGATGTATCAGCTACACCTTGTATGCTTACTTTGGATTAGAAATATTATTGGGCCATTCACACTACAATTACCTAGTTATTCATCAcctctctgtatttttttttttaagtgtttacaACTGGTTACCTGAGAGGAAGCTTTATAAGTACCCTCATATACTTTGTGGGTTCACTTTGCTTAAGAGGAAGTGTATTGCTCATAGATTTGCTCCCTCTTTACTGGAAGAATACAACTCAACACTTTTGtcaaacattgtttaaaaaaaactacacatttatgcgttataataataataataataataataatgatgaattCTTCCagttgtatgtttttatgtatacagTAATCTCTTTAATCTACTAGGAGCTTGAGCTATAGCAACAAGCATATAACCtataaaaaagtgtatatataatataataattaagcaTAATCCTGTGTGATCCATGTGTACGatgtataatgttttattgccaccttaaaaaaaatgtaatctaaaattACGAGATTAAAGTCATTTcatgaataatgtaaaaattccgagaataaagtagaaatattaCGAGAACAAAGTCAAACTATGAGAATAAGGTTGAAATATTTCAACAATAACCCTCAATAACCCTTATGTTATGTTCGGGCTGTTTTTGTCCcaaaaagattttctttttcccaAATAGTAATGTTTACTAATACTTAATACTAATAATGTTTTCGAATTGGACTTAAATTTAGTTAATATGTACtactacttaaatattttttttttatttagcttgttttctttcatttaggaATGGTTTTGTATTTCTATGTGCATGATTAATCTGTTTATCTGAGAGTAAATACCTAATTTTTAAGgtgaacattttgttttatcttaattttcacaatattaaagaattataaaaaaatttgcaCTGTTCATCACACTAGTGTGCTTTAATGTTTAATCTGGAagtttgcttttaaatgcttttattttgtacaaaattgCAAGAAAGTCACAATTTATTTCTATGTGCATTTGATTAATCGTAAGCCTCATTTATACAAAAGTGGGTCCCACATTTTTGGAGTgaaaatttatttcataaatacttTCCTCAATATgagctaaaaaaaatgatgaaaaatgtgttttttgttaaatcAATAGGTTTGTGTaggtaaatgcttttattttgttcaaaatttaACAAAGTCTCACTTGTCAAAAATGGGCAGCCATTGAAAATGAATGGGGAAGAATGACAGTAAAAGAAACAACTAGTGTTCAGAAACATGTGTTTGTAAACATAAGGGCTTTAGACCTTTGCGTGTGTGGATGCATGTATACTCAAGCtacctcacacactcacacagacactgcTTTGTCTTTAGTCTGTATTGaactcaaaataatattttctttcaccACATATTCAAGACAAAACATGATAAGTTTTAAGGAGTTCATGTTCTCAGAGTAGACAAAAGCACAGAGAGAAAGCATACAAATGCCTCACAGTTCCTTGCTTGTCATTCAGTCTGTTTTAGTGCAAAGGTGAAGAAGCTGAAAATCTTGCAACAGCTGAAGTGGAGAAATATTTGGATTTTGAAGAAATTCAGCCCAGCTGAAGTTGATGTAACATTCTGGTCGAAgggtgggaaaaaaagaaaaagaaaaaaaaaaaagattatattgaAGACAATGCAGGCTAAAGACAAGGCAGTTTGAATTTGTGTGTAATAGAGAAATAGAGAGTTataacatctgtgtgtgtgtgtggatagaGAGTATACATGCATCCATACACACAAGGAATAAAGTTGAAACATtgtgagaataaaataaaaatgtatcaagaATAAA
>XM_043249769.1
gaaggatAAGGGGAAGgggaaagagagatagagatagagacaCATATGGCGTTACTGGGCACATCAATACAGCGTAATTTTTGTCACTGTGCACAACagtaattactatttttaaattattggaAGGGGTGGGTGTAGAcgctaataaaacaaaatctaaaaggTAAATTGTTTGTTTCCGGTCGGAGCTGTATCCCTTTTAGccacaaaagaagaagaattaacACGTCCCCTGTAGTCACATGGCGAATCTGTCTCTAGTGTCTTTAGTAACGGAGTGACGCCGTTCTGTTTCTAAGCGCAACCCAGAAGCAAAATAAGGCTCTTCTCGCTAACTTTCATTGTAAATTCTGCAGTCCTTCACACCATTCCCAGTCTATTTTCATGAAAGTGCCTTTTGCTTTTCGGACCTTTTGTTAAGGCTCTATATTTAATATTGGATacgtttatttttcttcttgccACGTTAAAACTCTTCTGCATCACCCTGCCGTAATGGCTGATTTTGAGTTTAATGAGCATCATCAAAATGAGGTGATAAACTACATGCGTTTTGCCCGCTCTAAACGGGCACTGAGACTGAAGACAATTGACTCCTGCTTCCAAGATCTAAAAGATAGTAGGCTTATGGAAGAGACATATACAGTAGATGAGGTATCTGACATGCTGGACGGTCTGCAGGTGCTGGCAGAGAAATTCTACCTAAGGTTGCAAACGGACATTTCTGAGCTGGAAAACAGAGAACTACTAGAGCAAGTAGCTGAGTTTGAGAAGACTGATTTCAAAGCCAACAGCAAGgtAAATCAGGAGTCTAGTAAGCCAAAATTGGCACCACTGAATGAAGGAGGTGTGTCTGAACTACTCCAGaaggAGATTTCCAGACTACAAGAGGACAATGACAAACTAAAAGCTAGACTTAGGACTTTGGAATCTCAGGCCATGAGTGCTCTGGATGACAAGTCTAAAGCAGAGAGAGCCTTGAAAGACCTTCAGAAGAGCCAAGGAGATCAACAGTTTGCAACACATACTCAGGAGATCTCAAATTTGGAAGGCACAGTTGCAGCTATGCAGGCTGACTTTGAAAAGACCCTGAATGCTAACGTTGCATCTCAGAAAGACTTGCAGGACTGCCTGGTATCTGCCAAACATGACCTGCTCCGTGTCCAGGAACAACTTTCTCTTGCTGAAAAGGAACTGGAGAAGAAATTTCAGCAGACGGCTGCTTATCGCAACATGAAGGAGATTCTCACTAAAAAGAATGAACAGATTAAAGATCTGAGAAAGAGATTACAAAGGTATGAATCAGATGAGTGAATTTTAACCCACAGGAACACACATGAGGTCAACAGATTATCATTGGACCTGATGTATCAGCTACACCTTGTATGCTTACTTTGGATTAGAAATATTATTGGGCCATTCACACTACAATTACCTAGTTATTCATCAcctctctgtatttttttttttaagtgtttacaACTGGTTACCTGAGAGGAAGCTTTATAAGTACCCTCATATACTTTGTGGGTTCACTTTGCTTAAGAGGAAGTGTATTGCTCATAGATTTGCTCCCTCTTTACTGGAAGAATACAACTCAACACTTTTGtcaaacattgtttaaaaaaaactacacatttatgcgttataataataataataataataataatgatgaattCTTCCagttgtatgtttttatgtatacagTAATCTCTTTAATCTACTAGGAGCTTGAGCTATAGCAACAAGCATATAACCtataaaaaagtgtatatataatataataattaagcaTAATCCTGTGTGATCCATGTGTACGatgtataatgttttattgccaccttaaaaaaaatgtaatctaaaattACGAGATTAAAGTCATTTcatgaataatgtaaaaattccgagaataaagtagaaatattaCGAGAACAAAGTCAAACTATGAGAATAAGGTTGAAATATTTCAACAATAACCCTCAATAACCCTTATGTTATGTTCGGGCTGTTTTTGTCCcaaaaagattttctttttcccaAATAGTAATGTTTACTAATACTTAATACTAATAATGTTTTCGAATTGGACTTAAATTTAGTTAATATGTACtactacttaaatattttttttttatttagcttgttttctttcatttaggaATGGTTTTGTATTTCTATGTGCATGATTAATCTGTTTATCTGAGAGTAAATACCTAATTTTTAAGgtgaacattttgttttatcttaattttcacaatattaaagaattataaaaaaatttgcaCTGTTCATCACACTAGTGTGCTTTAATGTTTAATCTGGAagtttgcttttaaatgcttttattttgtacaaaattgCAAGAAAGTCACAATTTATTTCTATGTGCATTTGATTAATCGTAAGCCTCATTTATACAAAAGTGGGTCCCACATTTTTGGAGTgaaaatttatttcataaatacttTCCTCAATATgagctaaaaaaaatgatgaaaaatgtgttttttgttaaatcAATAGGTTTGTGTaggtaaatgcttttattttgttcaaaatttaACAAAGTCTCACTTGTCAAAAATGGGCAGCCATTGAAAATGAATGGGGAAGAATGACAGTAAAAGAAACAACTAGTGTTCAGAAACATGTGTTTGTAAACATAAGGGCTTTAGACCTTTGCGTGTGTGGATGCATGTATACTCAAGCtacctcacacactcacacagacactgcTTTGTCTTTAGTCTGTATTGaactcaaaataatattttctttcaccACATATTCAAGACAAAACATGATAAGTTTTAAGGAGTTCATGTTCTCAGAGTAGACAAAAGCACAGAGAGAAAGCATACAAATGCCTCACAGTTCCTTGCTTGTCATTCAGTCTGTTTTAGTGCAAAGGTGAAGAAGCTGAAAATCTTGCAACAGCTGAAGTGGAGAAATATTTGGATTTTGAAGAAATTCAGCCCAGCTGAAGTTGATGTAACATTCTGGTCGAAgggtgggaaaaaaagaaaaagaaaaaaaaaaaagattatattgaAGACAATGCAGGCTAAAGACAAGGCAGTTTGAATTTGTGTGTAATAGAGAAATAGAGAGTTataacatctgtgtgtgtgtgtggatagaGAGTATACATGCATCCATACACACAAGGAATAAAGTTGAAACATtgtgagaataaaataaaaatgtatcaagaATAAA

Function

symbol description
lztfl1 Acts upstream of or within negative regulation of smoothened signaling pathway. Located in cytoplasm and nucleus. Is expressed in several structures, including gill; integument; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 17. Orthologous to human LZTFL1 (leucine zipper transcription factor like 1).

NR:

description
leucine zipper transcription factor-like protein 1 isoform X2

GO: NA

KEGG:

id description
K19400 LZTFL1; leucine zipper transcription factor-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249768.1 True 3300 mRNA 0.35 10 422900 433678
XM_043249769.1 False 3222 mRNA 0.35 11 422900 433678

Neighbor

gene id symbol gene type direction distance location
ccr9b ccr9b,LOC107598203,LOC107749654,LOC107675310,LOC107726711,LOC107703604 coding downstream 14814 404682 ~ 408086 (-)
gli3 LOC107749627,LOC107747788,LOC107554716,LOC107598194,LOC107694915,LOC107694564 coding downstream 61297 210723 ~ 361603 (-)
prpf4bb prpf4bb,LOC107738454,LOC107749644,LOC107598186,LOC107670278,LOC107554722,LOC108442973 coding downstream 217341 193211 ~ 205559 (-)
trnag-gcc NA coding upstream 5376 439054 ~ 439128 (-)
LOC122353666 NA coding upstream 194022 627700 ~ 627818 (-)
LOC122342059 ncam2,LOC107748174,LOC107756756,LOC107673712,LOC108426076,LOC107721821 coding upstream 332548 766226 ~ 826226 (-)
farp1 farp1,LOC107730395,LOC107677850,LOC107653673,LOC107560794,LOC107744955,LOC107559785 coding upstream 617068 1050746 ~ 1116435 (-)
kpnb3 kpnb3,ipo5,LOC107677849,LOC107653674 coding upstream 684163 1117841 ~ 1137065 (-)
G66 NA non-coding downstream 491 422132 ~ 422409 (-)
G56 NA non-coding downstream 29048 393299 ~ 393852 (-)
G51 NA non-coding downstream 201572 218929 ~ 221328 (-)
G50 NA non-coding downstream 201826 218579 ~ 221074 (-)
G19 NA non-coding downstream 244699 177676 ~ 178201 (-)
G70 NA non-coding upstream 8201 441879 ~ 442209 (-)
G72 NA non-coding upstream 13830 447508 ~ 447882 (-)
G73 NA non-coding upstream 14650 448328 ~ 448640 (-)
G99 NA non-coding upstream 290067 723745 ~ 724036 (-)
G125 NA non-coding upstream 456566 890244 ~ 890587 (-)
G20 NA other downstream 235815 186420 ~ 187085 (-)
G67 NA other upstream 2130 435808 ~ 436125 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other upstream 304459 738137 ~ 748364 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other upstream 642510 1076188 ~ 1231647 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 1158391 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 2255087 2688765 ~ 2689464 (-)

Expression


Co-expression Network