LOC122352357 (slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534)


Basic Information

Item Value
gene id LOC122352357
gene name slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4007775 ~ 4011370 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249780.1
TCGCCAGCGAAGTGTTGCAAACGATTATAAAATCCCCCGTCAATCACACGCATGCTGGTAGACGCGCGAGAGCCCGCTATCTGCGTGTTTTACGCACCAGATTTTTGAGGAAaggcttttttttgtcaagtcAGAGACGCGCTTTAATCGTAAACGTAATATATGCAGCGAGTTTCGATCGATACGGACTTGTTTTAATAGTCTGAGATTTAACGCGTCGATCTgcctgcataaaaaaataataataatcaagcCGTAAAGGGTGATATAAAAGGGAATACCCAGCGTTCCTGTTgaaatgcacttatttttcaAGACATCGCATGTCTTAAGGGCTGTGACGTAGCGTATGTGCGCATAGTTCCTATAGTCTTGACGCAGTGTTTGTTGTGACAGTAATAGAAGAAGCTCAGCGCACCGGCTGCACTGTTGCATGCACGTCGAGTAGTTAATTATTTTACCGCATTCAACTGCAGTtccccctccacacacacactcacacacactcacggcggaaaaaaagaaacaacctTCACGCGAACAACACCTGCGCTTTGTGGAATACTTgagcatttctttttcttttcctacGTGAAACGGAAATATCGTCTGCGGGGACTCTGGAAATGCCGTGTGCTTTAAAGACATTCGGATGGGGAAAACGGAGCGGCTCCGCGAGAGCTGTCGGAGGGGATAGAGACGAGAAAAAGCGATCTGGAATGAAAGCAATCTAAACCCTTCGACGGCGATTTCTGTGGACATTTCCGACACTTGCTTGCCCTGTGTGTGGACTGTTTTTTCCCCCgtgcgagcgagcgagcgagcaaGCATTCCCTCGTCCGATGGATTTTTGCCTTCGCAGCTCAGCAGAGGGTGTTAGATCTGCTGGTGAACACCGGGCTGAAAAGTCCAGAATCTCTCAGCGACCGTCTTTGTGATATAAAAGCGTAAAGCGACGCCGTCGGAGTCAGAGGAAGGATGCTAAAGATGTAAGAATCTCGGATTAATCTTACTGCGATGCATTGAGATGTACGCGGTGTGATTTCAGCACCACGGGAGAAAGAACAGCTCCCGCGCCGTGGATATGTGAGAAATGCACAAGGTCAGTGATTTGCGAGCCCGAAAAGCCAAATAATTGAGTTGGAGATGTCATTCTGTACGCTTTAAGATTGTTTTGAGAGCATGCGATGGGGAGGTGATGAAAAAAAGGCTTCTTGATGTCGATTTTTCTCAATCTGGACATAGCGAGCTGAGCATGGATATAATCACAGAGTGTCCTCTGCTTTTTTAGACTGGAGATTTATCTCATTTCTCGCCCTCTTGCTGATTGTATTCATGTCTTGATGTCGGGGATGATTGTGTCGTATTGAAAATGCTGCTTTGGATTGTGTTGCTGAAGGCGGCTCTTTGTGTAGCTATCGGGAATGTTACAAGGGACGTCTGTAAGGAGCAGATCTGCTCCTGCAACGCAATAGAAGGCGATTTGCACATTGACTGCGAGAAAAGGAGCCTCACGAACCTGCACCATTTGACAGGTCCGAGCTCTCAGTTTTACCATCTCCTGCTTCACGGGAATTCTTTGTCCAGACTGTTCCCTAACGAGTTCGCTAACTTTTACAATGCCGTGAGCTTGCATTTGGAGAACAATGGCTTGCACGACATTGTGCCCGGTGCATTCCTGGGACTGCAGCTCGTCAAGCGGCTGCAcatcaataacaacaaaatcagATCTTTCAAAAAGAACACCTTTCTGGGCTTGGATGACCTGGAGTACCTTCAAGCCGACTTCAACCTTCTGAGGGACATCGACCCATCCGTGTTCAGGGACTTGAGTAAGCTGGAAGTTTTGATCTTAAACGACAACCTTATTAGCGCCCTTCCCATCAACGTGTTTCAGAACGTGCCCATAACACACCTTGATCTGAGAGGGAACCGCATAAAAACGTTGCCTTACGAGGGGATTCTAGAGCAGATACCTGGCATCGTGGAGGTTTTATTGGAGGACAACCCGTGGGACTGCAACTGCGACCTGGTTTCCCTAAAGGAATGGCTAGAGAACATCCCGCAGAACGTGCTCATTGGAAGGGTCATTTGCGAGGCGCCCACTCGGCTGCAAGGTAACGACCTGAACGAAACGGCCGAGTCGGAGCTGTGCCCTTCAAAGAGCGGCATGGATTCCAGTCTGGTGGCGCCTCCCACCCAAGACGAGACTCCCGATCGTCGCCCCCGCCCCACGCCCTCTAAAACGAGCGGGGTGACGGAGTCCCACAGCGGTGGGGGAGGCCATAACAGGGGCCGTTCCAAAGCCAAGGAGAACTGGCAGCTGAAAACCAAGCCTACGGCCATGGCGACTGGTGTCGTTGAAAGAGAGCCACCGGCTAATTCGACGTGCCCCCAGTCTTGTGATTGTAAGCTGATTGGAACCAGACAAGGGCTCGGGGTTAACTGTGAGGGCAAGAAGATAGAAAGTGTGGCCAATCTCAAACCCAAACCCCTGGTCGCGCATGAGTTGAACCTGCGTGACAATAACATTCACACCATCAGAAGGAATCAGCTCCGAGGCTACCACAGTTTGAACCTGCTCGATCTGGGGGGGAATAACATCAAGATGATCGAAAACGGCACCTTCCACAACCTGACCGAGTTGAGGTGGCTCTACATGGACAAGAACTACTTGGATACGTTAATGGCGGAGATGTTCGCAGGGCTTCAGAACCTGGAGTATCTCAGTTTGGAATATAATGACATCCAGCTCATCATGCCGGGCACCTTCAGCCCGATGCCCAACTTGAGGGTGCTCTTCCTCAACAACAACCTGCTCAAAGCTCTGCCCGTGGATGCATTCTTGGGGGTTTCTTTGTCTAAAATAAGCTTGCACAACAATTATTTCACTTATCTCCCTGTGCCAGGCGTCCTAGACCAGCTCAACTCTATCATCCAGATCGATTTGCATGGCAACCCCTGGGATTGCACGTGCAACATCGTTCCTTTCAAACAGTGGACTGACAAGCTTGGGGCGGACGTCATCGTGAGTGACCTCAAGTGCGAGTCGCCCGAGCAGTTCTGGAAGAGGGATTTCCGGCGGATCAGGAACGATCTGATGTGCCCTCAGCTCTACGAGAAGATCTCCCCCACCTCGCTGTCCAAAAACAGCACCTTCCCGGCAGACACGGGGACGCGGCCCAACTCCTACCTGGAGCCCAGCAGAGTGTCCATATCGGTGCTCGTGCCCGGTCTACTCTTGGTTTTCGTGACGTCTGCCTTCACCGTGGTGGGAATGCTGGTCTTTATCCTGCGCAATCGAAAGAGATCGAAGCGGAGAGACGGCAACTCTTCTGCGTCAGAAATCAATTCCTTACAGACAGTATGCGACTCGTCCTACTGGCACAGCGGAGCTTATCATGCGGATGGGCCACACAGAGGTTACGACTGTGGTGCCCACTCTCTCTCTGACAAATGATGCTCATGGAAGCAGGAGCGAGCAAACGGACGAACTGCGTTTCGTATGTTGCGGTGACAATGGAGGGCGACACACAAACACTAGACCTCAGACTCGCCtctgtgggaaaaaaagagataaaatagCCTATTTTTGT

Function

symbol description
slitrk1 Is expressed in nervous system.

NR:

description
PREDICTED: SLIT and NTRK-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249780.1 True 3596 mRNA 0.50 1 4007775 4011370

Neighbor

gene id symbol gene type direction distance location
slitrk6 slitrk6,LOC107674010,LOC107558904,LOC107730399,LOC107574216,LOC107737039,LOC107698122 coding upstream 189779 3804599 ~ 3817996 (+)
LOC122350229 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC108414264,LOC100710496 coding upstream 886955 2941770 ~ 3120820 (+)
LOC122328837 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC103365236 coding upstream 1225591 2758083 ~ 2782184 (+)
rpl24 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676,LOC107662117 coding upstream 1265364 2739677 ~ 2742411 (+)
LOC122353699 NA coding upstream 1265563 2742079 ~ 2742212 (+)
LOC122342374 erbb4a,LOC107674013,LOC107725343,LOC107556266,LOC108440448,LOC107557316,LOC107707608 coding downstream 209913 4221283 ~ 4232503 (+)
spry2 spry2,LOC107549433,LOC107750630,LOC107674014,LOC107676062,LOC107750049,LOC107556294 coding downstream 483824 4495194 ~ 4499239 (+)
tuba8l2 tuba8l2,LOC107750365,LOC107556293,LOC103042625,LOC108411703,LOC107549435 coding downstream 537082 4548452 ~ 4554686 (+)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding downstream 544135 4555505 ~ 4561710 (+)
atic atic,LOC107556291,LOC107750210,LOC107674004,LOC107549437,LOC107750055,LOC107676052 coding downstream 578661 4590031 ~ 4597077 (+)
G771 NA non-coding upstream 287236 3720264 ~ 3720539 (+)
G719 NA non-coding upstream 721573 3285949 ~ 3286202 (+)
G546 NA non-coding upstream 1277055 2726300 ~ 2730720 (+)
G538 NA non-coding upstream 1286852 2703522 ~ 2720923 (+)
G527 NA non-coding upstream 1380371 2626045 ~ 2627404 (+)
LOC122341420 NA non-coding downstream 8727 4020097 ~ 4024338 (+)
LOC122346127 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 non-coding downstream 198039 4209409 ~ 4218600 (+)
LOC122346159 LOC107557315,LOC107705456,LOC107725343,LOC107707608,LOC107674013,LOC107667809,LOC107556266 non-coding downstream 207872 4219242 ~ 4221288 (+)
G815 NA non-coding downstream 282683 4294053 ~ 4299198 (+)
G856 NA non-coding downstream 490871 4502241 ~ 4502477 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other upstream 308682 3636707 ~ 3699093 (+)
G727 NA other upstream 666899 3334658 ~ 3340876 (+)
G482 dusp27 other upstream 1411473 2594931 ~ 2596302 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other upstream 1480531 2524525 ~ 2527244 (+)
pcid2 pcid2 other upstream 1489390 2511572 ~ 2518385 (+)
G824 NA other downstream 345328 4356698 ~ 4357260 (+)
G826 NA other downstream 346637 4358007 ~ 4358296 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 926811 4938181 ~ 4944841 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other downstream 955816 4967186 ~ 4977263 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other downstream 967755 4979125 ~ 5025914 (+)

Expression


Co-expression Network