slitrk6 (slitrk6,LOC107674010,LOC107558904,LOC107730399,LOC107574216,LOC107737039,LOC107698122)


Basic Information

Item Value
gene id slitrk6
gene name slitrk6,LOC107674010,LOC107558904,LOC107730399,LOC107574216,LOC107737039,LOC107698122
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 3804599 ~ 3817996 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251222.1
GGGAGGAGCTCTAGTGAAGTGAAGCTCCAGCACAAGCTCATTCACTTGGCAGATCGAGAGGCTGGAGAATCTGTGCCTCCTCCACACCTTCAGTGAGAAACCGCGGGGGTCAGGCGCTCTCCGAAGCGACGCGGACAGCTGAATGTTAATAGCGGACTTTTATCCTCGACCGCTGGACTAGCAGAACACTGACGCGCGGAGCCCAAGCGATGCGGGCGCAAAACATCTGAGCATCGCCGGACAcgtaaatgaataataaaccaACCCGCCGCGCGATGGAGAGCTGAGGGCAAGTTGGATCTGGACTTGTTCCATGCGTCTTTTTGCGCGGTGGGCTCTTCCGTGCCAAGGAAGCCTTTTGAGAAGTCCAGGCGTCCGGTTTGTGCTGCAAAACTGGGTGGTTTTGTTTGATCCACAAAGCGCAGATAACTTGGCCAAGTGGAGCTACAAAGACTCCCGCGCTGCGTAATTTGGatACAAGGAAGAAACAACAAAATGCTGGCCAggattgttttcatttgctgCTTCTTTGCCGGTGCTAGTTTGGGAGATACTGAGCCCAAGGCGTTATACGGCGGAGCTTGCAAATCTTTGTGCACCTGTGAAGAGAAAGATGGACACTTGTACatgaactgtgaaaacagaaacaTAAGCAAAATCTCAGAAGTAAAAGTACCATCAGATATGCCTTTCCATTTAAACCTGTATAAAAACGACTTAGTGGAGTTACTCTCAGAGGATATGGATGCTTTCAAGAATGCCATCACCTTACATCTGGGCGCAAACAGCATTCAGGAGCTTGAACCTGGCGTGTTTAATGCATTGGGATCCCTGAGAAAGCTGCACATAAACAGCAATTTCCTGGTCATGCTGAAGGAGGACACATTTCATGGCTTGGTAAATTTGGAATACCTTCAGGCTGACACCAACTTCATCCGGGTCGTAGAGCCAGGGGCCTTCAGCAAGCTTGTCCGTCTTAAAGTTCTGATCCTCAATGACAACTCCATCGAGTTCCTTCCAAGCAACATTTTCCGCTTCGTGCCTCTGACACATTTGGATCTGCGTGGGAACAAGCTGCAGACACTGCCGTACGTGGGTTTCCTGGAGCATATCGGTCGTATCATGGAGCTCCTGTTGGAGGACAATGACTGGATGTGCAATTGTGAAATCTTGCATTTGAAGGTCTGGATTGAGAACATGCGGGCACAGTCATCCATTGGCGAGGTGGTTTGCAACAGGCCTGAGGATCTCAGGGGCATTTCTTTGGCTAGAGTTAAAAGGGATTTACTTTGCCCCTCCCATGCCGACATCAATCTCGAAGAGCCATCAAAGTCTTTAGACATGGTTGTCACCCCGTCCACCAAGGTCGTTCAGATACCGAATGTCAACGATGGCACCAAAATACCCACACCTTCAAATGGCCTAGGGACATTTTGCGTGCCAATGTGTTCTTGTCCTCCCCAAAGCATGGGTTTCTTAATGCACTGTGAAGACCGGGGCATTCAAAGGATATCCGATATAGGAATTCTTGATCAAAGTCCAACCAAGCTGTTTTTGACGGGAAATATGATACAGCGACTCTTCAAGTATGACTTTGTGACATACGACAGTCTGGAACTGCTTAATTTGGCAAACAACCAAATAGACTACATTGACAACGAGACCTTTCTAAGCTTGAGCAATTTGAAAAAGCTGTACCTGAATGGAAACAGGATAGAGAAAATCTCTGCCACAATGTTTCTCGGCCTTCACAATTTGGAATACTTGTACTTGGAGCATAATGTCATTAAAGACATTGAGGCTGGATCGTTCAACCCTTTGACAAATCTAAAGCTCCTTTTCCTAAACAACAATCTGCTCAACACTCTCCCCGCACAGATATTCCGTAACGTGCCCTTGGTGAGATTGAACCTGAGGAAAAATGTCTTTATGCACTTACCAGTGAGTAATGTGTTGGACCAGCTCAATTATTTGGAGCAAATTTATCTTGAGGACAATCCTTGGGACTGCACGTGTGATTTGGTCAGCCTCAAACAGTGGGTGGAAAAGCTAAGCAAGGACACCGTGATGGGTACCATCTTATGCCACACTCCTCAAAAACTGTCTACTGCTGAGCTTAGAAACCTGAAGCATGATGTTCTCTGTCCTGGACTGGTCACCTATAAGTCCTTACCTGGAGACACGAAGGATGCTATTGTAGCCACGCCTGTGCCAGGGGTCGGCACCAGTGGCTTCTTCTGGTCTCTGACAGAAGCCGTGCCACTATCCGTGCTCATCCTCTGCCTTCTCATCCTCTTTCTGACCTTCATTTTCTGTGCCGCGGGGatcattgtgtttgtgttgcacCGTCGGCGGAGACAGGCCAAGAAAAAACAAGCCGAGGAGCAACCTCGCGAGAGCAGTCCCATCCACCTGCACTACAGCATGTACGGCCAGAAGACCACCCACCACGTAACTGAGAGGCAAGGCCCCGGCATGTACGACGAACCTTCCCGTAGCCCCATCGTTCAGGTCTGCAGAAACCCTAGTTACTGCTCCCAGCACAAAGAATACGAGTTGGACGAATACGACAGTGAGAAACCCAAACATATCTGCCACAGCATCCTCGACAAGGAGAGCGACTCCCTCCTCACGGGGGCCAACATGAAGTTCAGGGCTGTCACAGACTACCCCGCTGAGTTTGTGAGTTTGGGAGATGCGAGCTCCTTGTACAAGAACATCTTAGAAAGGGAACGGGAGCTCCAACAGCTGAGCCTCGGAGAATATCTCAGGAAAAACATATCACAGCTACAACCAGCAGTGGACATGCAAGTCCCCAACCACCACAAGGAGCTTAAACTAATGGAGACTCTTGTTTATACGAGGCCACGGAAGGTCATGGTGGAACAGACTAAAAACGAGTACTTTGAACTCAAAGCCAACTTACATGCCGAACCAGACTATTTAGAAGTCTTAGAGCATCAAACAACTTTCAACTGAGATAAGTACACTGTATGCTTTGATTTGACAAATGATACTCCCAAG

Function

symbol description
slitrk6 Predicted to be involved in axonogenesis. Predicted to act upstream of or within regulation of presynapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in high myopia-sensorineural deafness syndrome. Orthologous to human SLITRK6 (SLIT and NTRK like family member 6).

NR:

description
PREDICTED: SLIT and NTRK-like protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251222.1 True 3024 mRNA 0.48 2 3804599 3817996

Neighbor

gene id symbol gene type direction distance location
LOC122350229 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC108414264,LOC100710496 coding upstream 683779 2941770 ~ 3120820 (+)
LOC122328837 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC103365236 coding upstream 1022415 2758083 ~ 2782184 (+)
rpl24 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676,LOC107662117 coding upstream 1062188 2739677 ~ 2742411 (+)
LOC122353699 NA coding upstream 1062387 2742079 ~ 2742212 (+)
tmem39a tmem39a,LOC107662110,LOC107570077,LOC107551106,LOC107751086 coding upstream 1104375 2691742 ~ 2700224 (+)
LOC122352357 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 coding downstream 189779 4007775 ~ 4011370 (+)
LOC122342374 erbb4a,LOC107674013,LOC107725343,LOC107556266,LOC108440448,LOC107557316,LOC107707608 coding downstream 403287 4221283 ~ 4232503 (+)
spry2 spry2,LOC107549433,LOC107750630,LOC107674014,LOC107676062,LOC107750049,LOC107556294 coding downstream 677198 4495194 ~ 4499239 (+)
tuba8l2 tuba8l2,LOC107750365,LOC107556293,LOC103042625,LOC108411703,LOC107549435 coding downstream 730456 4548452 ~ 4554686 (+)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding downstream 737509 4555505 ~ 4561710 (+)
G771 NA non-coding upstream 84060 3720264 ~ 3720539 (+)
G719 NA non-coding upstream 518397 3285949 ~ 3286202 (+)
G546 NA non-coding upstream 1073879 2726300 ~ 2730720 (+)
G538 NA non-coding upstream 1083676 2703522 ~ 2720923 (+)
G527 NA non-coding upstream 1177195 2626045 ~ 2627404 (+)
LOC122341420 NA non-coding downstream 202101 4020097 ~ 4024338 (+)
LOC122346127 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 non-coding downstream 391413 4209409 ~ 4218600 (+)
LOC122346159 LOC107557315,LOC107705456,LOC107725343,LOC107707608,LOC107674013,LOC107667809,LOC107556266 non-coding downstream 401246 4219242 ~ 4221288 (+)
G815 NA non-coding downstream 476057 4294053 ~ 4299198 (+)
G856 NA non-coding downstream 684245 4502241 ~ 4502477 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other upstream 105506 3636707 ~ 3699093 (+)
G727 NA other upstream 463723 3334658 ~ 3340876 (+)
G482 dusp27 other upstream 1208297 2594931 ~ 2596302 (+)
setdb2 LOC107570068 other upstream 1246072 2493572 ~ 2558527 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other upstream 1277355 2524525 ~ 2527244 (+)
G824 NA other downstream 538702 4356698 ~ 4357260 (+)
G826 NA other downstream 540011 4358007 ~ 4358296 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 1120185 4938181 ~ 4944841 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other downstream 1149190 4967186 ~ 4977263 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other downstream 1161129 4979125 ~ 5025914 (+)

Expression


Co-expression Network