lancl1 (lancl1,LOC107564761,LOC107702553,LOC107590692)


Basic Information

Item Value
gene id lancl1
gene name lancl1,LOC107564761,LOC107702553,LOC107590692
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5593642 ~ 5600055 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251527.1
TATTCACAAACCTGCCGTCCTGGGAAGAAGAACTCAACAGTGCAGCGCTAACAGCGGTCACTCCTGAAAAAATGTCTGAACAACGAGCTTTAAAGAACCCCTATCCAGATTACACCGGGCCTGGATGTGCACAAGATCTGTTTGACATGCAGGGAAATTTGACCCAGCATTTTGCCAGTTGTATAAGCAGCAAGATCAGTGAGCTTCTGGCGGTCATGGAGAATGGACTGAAGAACGCTGATCCCAGGGACTGCACTGGTTACACTGGCTGGGCAGGCATTGCCCTGCTCTACCTGCACCTCCACAGCACCTTTGGAGAGCCCTCTTTCCTCCAGAAGGCTCTGGACTATGTCAGCCGCAGTCTGAGGAGTCTAACCCAGCGCTGGGTGACCTTCCTGTGTGGGGATGCAGGGCCGCTGGCTGTTGCTGCGGTGGTCTATCATCGACTCCAGAAACCTCatgaggctgaggagtgtgtgAACAGGCTGTTGCATTTGCACCAGTCAGTAGTGCAGGGGAAAGGCAGGCTTCCTGATGAGCTGCTCTATGGCAGAGTGGGTTACCTTTACTCCCTCATCTTCATTAACCAGCAATTTCAACAGGAGAAGATCCCCATTCAGTACATTCAGCAGATCTGTGATGCAGTGTTGGCTTCAGGACAGAATCTGTCTATCAGGAACAAGATCCAGGAGCAGAGCCCTCTCATGTATGAGTGGTATCAGGAGGAGTATATGGGTGCCGCCCATGGCCTGTCAGGGATCTACTACTACTTGATGCAGCCTGGCTTTGTGGTCGGAGAGGACAGAGTTTACCATCTAGTCAAACCCAGCGTGAACTACGTGTGTCACCTGAAGTTTCCATCAGGCAATTACCCACCTTGTGTCGGAGATTCTCGGGATCTTCTGGTGCACTGGTGTCACGGCTCTCCTGGAGTGATCTACATGTTGATACAGGCCTTTAAGGTGTTTGGCGTGAGGCAGTATCTGGAGGACGCGCTGCACTGTGGGGAGGTGATCTGGCACAGAGGTTTGCTGAAGAAGGGTTACGGCCTCTGTCATGGTGCGGCTGGAAACGCATATGGCTTCCTGGCCCTTTACAAGATCACCCAGGATCCCAAACACCTCTACAGAGCCTGCATGTTTGCAGACTGGTGCATGAATTATGGAAAACATGGCTGCCGGACTCCAGATACACCGTTCTCACTGTTTGAAGGGATGGCAGGCACAATTTATTTCCTGACCGACTTGCTGCAGCCGACTAGAGCCAAGTTCCCGGCTTTTGAGGTGTAAAGACTGTTCCAGACGACTGAGTTTTTTTCGCTTAAGCTTCCCCCCGAGCCAGAAGAACTCGCGCTCTAATGGTGGAATAGTACTGTCTCACTCTGCATGTGCGTCTGTATGCCGCTGATCTGTCACAATTCACGCTAAGTCTTATGAGAGTTGCTGTACATGTGGAGAACAGTACCCTGGAGGTGTTATTTTTGCCCTTAACGGAAGGTGGATGGGAATCTAGGCTGTATAGATTAGGGTTACTTTGGAACTGTTAAGGAAAGCTGCTTTAAATAGCTCGATATGCTTAACAGATCGCActgatttttgtgaatttttgaTGTTACATGTCCGTTAGTATTACTTTAATTAATACGACTCATTGAAAATGAActgttttgatgtgtttgtgaGGATAAATTCCGATATGACAGCAAGGTAAAGTATGACGTCTTAGTGGTTGGTAATTAATCAAACAGCATCTTTAAGGTGACACTAAAATACAGTGATGATATGCTTTCTGTAAGATTAATGCTTTGCTTTCTGTATTAGTAAtgtattattccttttttttctctctcttgatAATGCTAGTTGTTATATCAGAGGATGTGCTGCCAACACAATTTTAGGTTTTATTCGGTTGTggaataatttgttttttagcattttcatttgccttttttcatcagtatttgtacattttcatctgcccagcaataaaaaaaaataaggaaagCA

Function

symbol description
lancl1 Predicted to enable glutathione binding activity; glutathione transferase activity; and zinc ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be active in plasma membrane. Orthologous to human LANCL1 (LanC like 1).

NR:

description
PREDICTED: lanC-like protein 1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043295 glutathione binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K25210 LANCL1; glutathione transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251527.1 True 2009 mRNA 0.47 11 5593642 5600055

Neighbor

gene id symbol gene type direction distance location
si:ch73-383l1.1 erbb4a,erbb4,LOC107705456,LOC108440448,LOC107674013,LOC107702505,LOC107707608,LOC107667809 coding upstream 30769 5440065 ~ 5562873 (+)
erbb4a erbb4a,erbb4,LOC107674013,LOC107707608,LOC107725343,LOC107667809,LOC107557316,LOC108440448,LOC101079286 coding upstream 299202 5157979 ~ 5294440 (+)
ube2f ube2f,LOC107725407,LOC107556276,LOC107674019,LOC107707607,LOC107566887 coding upstream 437286 5149028 ~ 5156356 (+)
si:ch211-93g23.2 si:ch211-93g23.2,LOC107725372,LOC107674017,LOC107556277 coding upstream 444752 5145908 ~ 5148890 (+)
fastkd2 LOC107673994 coding upstream 626722 4960324 ~ 4966920 (+)
mylz3 mylz3,LOC107725378,LOC107564772,LOC107701775,LOC107702554,LOC107705457 coding downstream 3652 5603707 ~ 5607415 (+)
LOC122347193 pcnp,LOC107564735,LOC107590694,LOC107702552 coding downstream 8274 5608329 ~ 5610739 (+)
en1b eng1b,en1,LOC107705463,LOC107702516 coding downstream 68342 5668397 ~ 5672318 (+)
LOC122347080 NA coding downstream 179642 5779697 ~ 5782861 (+)
slc5a10 slc5a10 coding downstream 237058 5837113 ~ 5860158 (+)
LOC122344626 NA non-coding upstream 185344 5404612 ~ 5408298 (+)
G1036 NA non-coding upstream 436661 5156722 ~ 5156981 (+)
LOC122346173 NA non-coding upstream 454788 5127490 ~ 5138854 (+)
G1016 NA non-coding upstream 492320 5038720 ~ 5101322 (+)
G948 NA non-coding upstream 615728 4977422 ~ 4977914 (+)
G1061 NA non-coding downstream 14332 5614387 ~ 5622881 (+)
G1060 NA non-coding downstream 15665 5615720 ~ 5623944 (+)
G1086 NA non-coding downstream 74317 5674372 ~ 5674683 (+)
G1091 NA non-coding downstream 137832 5737887 ~ 5789576 (+)
G1154 si:dkeyp-9d4.3,LOC107725391,LOC107701782,LOC107564683,LOC107722956,LOC107590702 non-coding downstream 197338 5797393 ~ 5798851 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other upstream 567728 4979125 ~ 5025914 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other upstream 616379 4967186 ~ 4977263 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other upstream 648801 4938181 ~ 4944841 (+)
G826 NA other upstream 1235346 4358007 ~ 4358296 (+)
G824 NA other upstream 1236382 4356698 ~ 4357260 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other downstream 279405 5879460 ~ 5881134 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other downstream 457349 6057404 ~ 6087655 (+)
G1318 NA other downstream 685803 6285858 ~ 6287198 (+)
G1414 NA other downstream 933447 6533502 ~ 6536957 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other downstream 1111580 6711635 ~ 6845548 (+)

Expression


Co-expression Network