LOC122341717


Basic Information

Item Value
gene id LOC122341717
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7297494 ~ 7298145 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250485.1
CAAATATATAACGGCcctcattcactgcagagcacgCATAGAATCCTCCTTCTGAAGCAAGTCTTTGCAGCACCGAAAACCGACATGCGGACTTTGACTGGCAGTTGTTCCACATCATTTGCTCGGGTACGAGTGAGAATGATGTATTGCTGACTCCTTGCGAAGCATTAGTGTGATTTTACAGCAGAAACTATCAGCACTCTGATCGTGATGCTATCTGGACGCAGTCCAGGAAATGGAGGATGAAGAGGAATCTAGTTGGCTATGGTTGACAGGGACGGTGCTTATTACCACGTCACAGCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250485.1 True 307 lncRNA 0.47 3 7297494 7298145

Neighbor

gene id symbol gene type direction distance location
crfb15 LOC107692625,LOC107723179,LOC107758857 coding downstream 94407 7197533 ~ 7203087 (-)
cfap221 cfap221,LOC107758838 coding downstream 100833 7187566 ~ 7196661 (-)
LOC122344694 LOC107723159,LOC107565429,LOC107723172,LOC107665982,LOC107758876,LOC107590752,LOC107692684 coding downstream 153641 7141333 ~ 7143853 (-)
LOC122344706 LOC107565429,LOC107590752,LOC107692683 coding downstream 159014 7135760 ~ 7138480 (-)
zgc:174945 NA coding downstream 161886 7134391 ~ 7135608 (-)
knl1 casc5 coding upstream 1803 7299948 ~ 7311221 (-)
sdk1b sdk1b,LOC107692681,LOC107723157,LOC107665954,LOC107586817,LOC107758841,LOC107565061 coding upstream 20193 7318338 ~ 7485657 (-)
LOC122348313 LOC107557944,LOC107758859,LOC107577730,LOC107665949,LOC107576538 coding upstream 228940 7527085 ~ 7529413 (-)
brat1 LOC107723191,LOC107564194,LOC107692679,LOC107758883 coding upstream 235104 7533249 ~ 7540360 (-)
zmp:0000001069 LOC107723174,LOC107565406,LOC107692713,LOC107758860,LOC107557941,LOC107758862,LOC107665948 coding upstream 275583 7573728 ~ 7577469 (-)
G1632 NA non-coding downstream 145014 7150285 ~ 7152480 (-)
G1553 NA non-coding downstream 293793 6982959 ~ 7003701 (-)
G1544 NA non-coding downstream 294506 6958686 ~ 7002988 (-)
G1532 NA non-coding downstream 437228 6859889 ~ 6860266 (-)
G1531 NA non-coding downstream 439433 6857795 ~ 6858061 (-)
G1660 knstrn,LOC107723170,LOC107564216,LOC107758858,LOC107586895 non-coding upstream 14107 7312252 ~ 7312898 (-)
G1663 NA non-coding upstream 17765 7315910 ~ 7316318 (-)
G1781 NA non-coding upstream 357933 7656078 ~ 7660532 (-)
G1809 LOC107723197,LOC107692608,LOC107564078 non-coding upstream 445350 7743495 ~ 7797446 (-)
G1845 pcdh10a,LOC107751533,LOC107665923,LOC107557555 non-coding upstream 655068 7953213 ~ 7984303 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other downstream 1665 7204004 ~ 7295829 (-)
G1642 NA other downstream 127472 7125642 ~ 7170022 (-)
trpc5a trpc5a,LOC107564287,LOC107692628,LOC107758875,LOC107590730,LOC108439362 other downstream 163212 7071589 ~ 7134282 (-)
LOC122342514 NA other downstream 752936 6533501 ~ 6544558 (-)
gaa2 si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 other downstream 829240 6456044 ~ 6468254 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other upstream 1193999 8492144 ~ 8500212 (-)
G1926 NA other upstream 1257895 8556040 ~ 8607795 (-)
LOC122351550 LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 other upstream 1481067 8779212 ~ 8798355 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other upstream 3059036 10357181 ~ 10401686 (-)
LOC122347930 dnah6,LOC106610484 other upstream 3436825 10734970 ~ 10799609 (-)

Expression


Co-expression Network